Min Xu

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 17

Top Venues

PLoS computational biology

bioRxiv : the preprint server for biology

IEEE access : practical innovations, open solutions

Bioinformatics (Oxford, England)

Carnegie Mellon University

University of Southern California (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Carnegie Mellon University Jul 01 2016

United States

Assistant Research Professor :: Computational Biology Department

University of Southern California Aug 01 2009 - Jul 30 2016

United States

Senior Research Associate :: Computational Biology and Bioinformatics

Education History

University of Southern California - Aug 01 2009

United States

PHD :: Computational Biology and Bioinformatics

University of Southern California - May 01 2009

United States

MSC :: Mathematics

Publications

Xiangrui Zeng, Yizhe Ding, Yueqian Zhang, Mostofa Rafid Uddin, Ali Dabouei, Min Xu
DUAL: deep unsupervised simultaneous simulation and denoising for cryo-electron tomography. bioRxiv : the preprint server for biology (2024)
Xiangrui Zeng, Yizhe Ding, Yueqian Zhang, Mostofa Rafid Uddin, Ali Dabouei, Min Xu
DUAL: deep unsupervised simultaneous simulation and denoising for cryo-electron tomography. bioRxiv : the preprint server for biology (2024)
Jennifer Jiang, Mikhail V Keniya, Anusha Puri, Xueying Zhan, Jeff Cheng, Huan Wang, Gigi Lin, Yun-Kyung Lee, Nora Jaber, Yasmine Hassoun, Erika Shor, Zheng Shi, Sang-Hyuk Lee, Min Xu, David S Perlin, Wei Dai
Structural and Biophysical Dynamics of Fungal Plasma Membrane Proteins and Implications for Echinocandin Action in Candida glabrata . bioRxiv : the preprint server for biology (2024)
Xiangrui Zeng, Anson Kahng, Liang Xue, Julia Mahamid, Yi-Wei Chang, Min Xu
High-throughput cryo-ET structural pattern mining by unsupervised deep iterative subtomogram clustering. Proceedings of the National Academy of Sciences of the United States of America 120 (15) (2023)
Xiangrui Zeng, Ziqian Lin, Mostofa Rafid Uddin, Bo Zhou, Chao Cheng, Jing Zhang, Zachary Freyberg, Min Xu
Structure Detection in Three-Dimensional Cellular Cryoelectron Tomograms by Reconstructing Two-Dimensional Annotated Tilt Series. Journal of computational biology : a journal of computational molecular cell biology 29 (8) (2022)
Satish Chandra, Mahendra Kumar Gourisaria, Harshvardhan Gm, Debanjan Konar, Xin Gao, Tianyang Wang, Min Xu
Prolificacy Assessment of Spermatozoan via State-of-the-Art Deep Learning Frameworks. IEEE access : practical innovations, open solutions 10 (2022)
Aviral Chharia, Rahul Upadhyay, Vinay Kumar, Chao Cheng, Jing Zhang, Tianyang Wang, Min Xu
Deep-Precognitive Diagnosis: Preventing Future Pandemics by Novel Disease Detection With Biologically-Inspired Conv-Fuzzy Network. IEEE access : practical innovations, open solutions 10 (2022)
Shushrruth Sai Srinivasan, Yanwen Gong, Siwei Xu, Ahyeon Hwang, Min Xu, Matthew J Girgenti, Jing Zhang
InsuLock: A Weakly Supervised Learning Approach for Accurate Insulator Prediction, and Variant Impact Quantification. Genes 13 (4) (2022)
Che Yu Lee, Yuhang Chen, Ziheng Duan, Min Xu, Matthew J Girgenti, Ke Xu, Mark Gerstein, Jing Zhang
Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data. PLoS computational biology 18 (10) (2022)
Baoyi Zhang, Kevin Yao, Min Xu, Jia Wu, Chao Cheng
Deep Learning Predicts EBV Status in Gastric Cancer Based on Spatial Patterns of Lymphocyte Infiltration. Cancers 13 (23) (2021)
Liangyong Yu, Ran Li, Xiangrui Zeng, Hongyi Wang, Jie Jin, Yang Ge, Rui Jiang, Min Xu
Few shot domain adaptation for in situ macromolecule structural classification in cryoelectron tomograms. Bioinformatics (Oxford, England) 37 (2) (2021)
Hmrishav Bandyopadhyay, Zihao Deng, Leiting Ding, Sinuo Liu, Mostofa Rafid Uddin, Xiangrui Zeng, Sima Behpour, Min Xu
Cryo-shift: reducing domain shift in cryo-electron subtomograms with unsupervised domain adaptation and randomization. Bioinformatics (Oxford, England) (2021)
Yufeng Yang, Yixiao Ma, Jing Zhang, Xin Gao, Min Xu
AttPNet: Attention-Based Deep Neural Network for 3D Point Set Analysis. Sensors (Basel, Switzerland) 20 (19) (2020)
Ran Li, Liangyong Yu, Bo Zhou, Xiangrui Zeng, Zhenyu Wang, Xiaoyan Yang, Jing Zhang, Xin Gao, Rui Jiang, Min Xu
Few-shot learning for classification of novel macromolecular structures in cryo-electron tomograms. PLoS computational biology 16 (11) (2020)
Yumin Zheng, Haohan Wang, Yang Zhang, Xin Gao, Eric P Xing, Min Xu
Poly(A)-DG: A deep-learning-based domain generalization method to identify cross-species Poly(A) signal without prior knowledge from target species. PLoS computational biology 16 (11) (2020)
Sinuo Liu, Xiaojuan Ban, Xiangrui Zeng, Fengnian Zhao, Yuan Gao, Wenjie Wu, Hongpan Zhang, Feiyang Chen, Thomas Hall, Xin Gao, Min Xu
A unified framework for packing deformable and non-deformable subcellular structures in crowded cryo-electron tomogram simulation. BMC bioinformatics 21 (1) (2020)
Chengqian Che, Ruogu Lin, Xiangrui Zeng, Karim Elmaaroufi, John Galeotti, Min Xu
Improved deep learning-based macromolecules structure classification from electron cryo-tomograms. Machine vision and applications 29 (8) (2018)

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Publication Activity (10 Years)

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Min Xu