Xin Gao (X Gao)

Scopus Author ID ResearcherID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 118

Top Venues

Nature communications

Bioinformatics (Oxford, England)

Molecules (Basel, Switzerland)

Nature computational science

King Abdullah University of Science and Technology (KAUST)

University of Waterloo (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

King Abdullah University of Science and Technology (KAUST)

Saudi Arabia

Assistant Professor :: Computer Science

Education History

University of Waterloo Sep 01 2004 - Sep 10 2009

Canada

PHD :: David R. Cheriton School of Computer Science

Tsinghua University Sep 01 2000 - Jun 10 2004

China

BSC :: Department of Computer Science and Technology

Publications

Xiaokun Li, Qiang Yang, Long Xu, Weihe Dong, Gongning Luo, Wei Wang, Suyu Dong, Kuanquan Wang, Ping Xuan, Xianyu Zhang, Xin Gao
DrugMGR: a deep bioactive molecule binding method to identify compounds targeting proteins. Bioinformatics (Oxford, England) 40 (4) (2024)
Kexin Shi, Yuanpeng Xiong, Yu Wang, Yifan Deng, Wenjia Wang, Bingyi Jing, Xin Gao
PractiCPP: a deep learning approach tailored for extremely imbalanced datasets in cell-penetrating peptide prediction. Bioinformatics (Oxford, England) 40 (2) (2024)
Siyuan Chen, Jiuming Wang, Inkyung Jung, Zhaowen Qiu, Xin Gao, Yu Li
A fast and adaptive detection framework for genome-wide chromatin loop mapping from Hi-C data. Genome research (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Qiang Yang, Long Xu, Weihe Dong, Xiaokun Li, Kuanquan Wang, Suyu Dong, Xianyu Zhang, Tiansong Yang, Feng Jiang, Bin Zhang, Gongning Luo, Xin Gao, Guohua Wang
HLAIImaster: a deep learning method with adaptive domain knowledge predicts HLA II neoepitope immunogenic responses. Briefings in bioinformatics 25 (4) (2024)
Xin Xia, Yiping Liu, Chunhou Zheng, Xingyi Zhang, Qingwen Wu, Xin Gao, Xiangxiang Zeng, Yan-Sen Su
Evolutionary Multiobjective Molecule Optimization in an Implicit Chemical Space. Journal of chemical information and modeling 64 (13) (2024)
Tiantian Xu, Yongfang Li, Xin Gao, Lu Zhang
Understanding the Fast-Triggering Unfolding Dynamics of FK-11 upon Photoexcitation of Azobenzene. The journal of physical chemistry letters 15 (13) (2024)
Kexin Shi, Yuanpeng Xiong, Yu Wang, Yifan Deng, Wenjia Wang, Bingyi Jing, Xin Gao
PractiCPP: a deep learning approach tailored for extremely imbalanced datasets in cell-penetrating peptide prediction. Bioinformatics (Oxford, England) 40 (2) (2024)
Xiaopeng Xu, Chencheng Xu, Wenjia He, Lesong Wei, Haoyang Li, Juexiao Zhou, Ruochi Zhang, Yu Wang, Yuanpeng Xiong, Xin Gao
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer. Bioinformatics (Oxford, England) 40 (6) (2024)
Xintao Song, Lei Bao, Chenjie Feng, Qiang Huang, Fa Zhang, Xin Gao, Renmin Han
Accurate Prediction of Protein Structural Flexibility by Deep Learning Integrating Intricate Atomic Structures and Cryo-EM Density Information. Nature communications 15 (1) (2024)
Slimane Laref, Fouzi Harrou, Ying Sun, Xin Gao, Takashi Gojobori
Exploring Antiviral Drugs on Monolayer Black Phosphorene: Atomistic Theory and Explainable Machine Learning-Assisted Platform. International journal of molecular sciences 25 (9) (2024)
Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han
Accurate global and local 3D alignment of cryo-EM density maps using local spatial structural features. Nature communications 15 (1) (2024)
Kexin Shi, Yuanpeng Xiong, Yu Wang, Yifan Deng, Wenjia Wang, Bingyi Jing, Xin Gao
PractiCPP: a deep learning approach tailored for extremely imbalanced datasets in cell-penetrating peptide prediction. Bioinformatics (Oxford, England) 40 (2) (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Huiqiang Cai, Bin Zhang, Johanne Ahrenfeldt, Justin V Joseph, Maria Riedel, Zongliang Gao, Sofie K Thomsen, Ditte S Christensen, Rasmus O Bak, Henrik Hager, Mikkel H Vendelbo, Xin Gao, Nicolai Juul Birkbak, Martin K Thomsen
CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature communications 15 (1) (2024)
Huiqiang Cai, Bin Zhang, Johanne Ahrenfeldt, Justin V Joseph, Maria Riedel, Zongliang Gao, Sofie K Thomsen, Ditte S Christensen, Rasmus O Bak, Henrik Hager, Mikkel H Vendelbo, Xin Gao, Nicolai Juul Birkbak, Martin K Thomsen
CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature communications 15 (1) (2024)
Kang Hu, Peng Ni, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jian-Xin Wang
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation. Nature communications 15 (1) (2024)
Bin Liu, Yanping Qi, Xiaowei Wang, Xin Gao, Yuan Yao, Lu Zhang
Investigation of the Flipping Dynamics of 1, N6-Ethenoadenine in Alkyladenine DNA Glycosylase. The journal of physical chemistry. B (2024)
Xiaopeng Xu, Chencheng Xu, Wenjia He, Lesong Wei, Haoyang Li, Juexiao Zhou, Ruochi Zhang, Yu Wang, Yuanpeng Xiong, Xin Gao
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer. Bioinformatics (Oxford, England) 40 (6) (2024)
Xin Xia, Yiping Liu, Chunhou Zheng, Xingyi Zhang, Qingwen Wu, Xin Gao, Xiangxiang Zeng, Yan-Sen Su
Evolutionary Multiobjective Molecule Optimization in an Implicit Chemical Space. Journal of chemical information and modeling 64 (13) (2024)
Kang Hu, Peng Ni, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jian-Xin Wang
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation. Nature communications 15 (1) (2024)
Slimane Laref, Fouzi Harrou, Ying Sun, Xin Gao, Takashi Gojobori
Exploring Antiviral Drugs on Monolayer Black Phosphorene: Atomistic Theory and Explainable Machine Learning-Assisted Platform. International journal of molecular sciences 25 (9) (2024)
Xintao Song, Lei Bao, Chenjie Feng, Qiang Huang, Fa Zhang, Xin Gao, Renmin Han
Accurate Prediction of Protein Structural Flexibility by Deep Learning Integrating Intricate Atomic Structures and Cryo-EM Density Information. Nature communications 15 (1) (2024)
Emile Cavalet-Giorsa, Andrea González-Muñoz, Naveenkumar Athiyannan, Samuel Holden, Adil Salhi, Catherine Gardener, Jesús Quiroz-Chávez, Samira M Rustamova, Ahmed Fawzy Elkot, Mehran Patpour, Awais Rasheed, Long Mao, Evans S Lagudah, Sambasivam K Periyannan, Mingzhe Zhang, Axel Himmelbach, Jochen Christoph Reif, Manuela Knauft, Martin Mascher, Nils Stein, Noam Chayut, Sreya Ghosh, Dragan Perovic, Alexander Putra, Ana B Perera, Chia-Yi Hu, Guotai Yu, Hanin Ibrahim Ahmed, Konstanze D Laquai, Luis F Rivera, Renjie Chen, Yajun Wang, Xin Gao, Sanzhen Liu, W John Raupp, Eric L Olson, Jong-Yeol Lee, Parveen Chhuneja, Satinder Kaur, Peng Zhang, Robert F Park, Yi Ding, Deng-Cai Liu, Wanlong Li, Firuza Y Nasyrova, Jan Dvorak, Mehrdad Abbasi, Meng Li, Naveen Kumar, Wilku B Meyer, Willem H P Boshoff, Brian J Steffenson, Oadi Matny, Parva K Sharma, Vijay K Tiwari, Surbhi Grewal, Curtis J Pozniak, Harmeet Singh Chawla, Jennifer Ens, Luke T Dunning, James A Kolmer, Gerard R Lazo, Steven S Xu, Yong Q Gu, Xianyang Xu, Cristobal Uauy, Michael Abrouk, Salim Bougouffa, Gurcharn S Brar, Brande B H Wulff, Simon G Krattinger
Origin and evolution of the bread wheat D genome. Nature (2024)
Xiaopeng Xu, Chencheng Xu, Wenjia He, Lesong Wei, Haoyang Li, Juexiao Zhou, Ruochi Zhang, Yu Wang, Yuanpeng Xiong, Xin Gao
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer. Bioinformatics (Oxford, England) 40 (6) (2024)
Huiqiang Cai, Bin Zhang, Johanne Ahrenfeldt, Justin V Joseph, Maria Riedel, Zongliang Gao, Sofie K Thomsen, Ditte S Christensen, Rasmus O Bak, Henrik Hager, Mikkel H Vendelbo, Xin Gao, Nicolai Juul Birkbak, Martin K Thomsen
CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature communications 15 (1) (2024)
Xintao Song, Lei Bao, Chenjie Feng, Qiang Huang, Fa Zhang, Xin Gao, Renmin Han
Accurate Prediction of Protein Structural Flexibility by Deep Learning Integrating Intricate Atomic Structures and Cryo-EM Density Information. Nature communications 15 (1) (2024)
Xiaokun Li, Qiang Yang, Long Xu, Weihe Dong, Gongning Luo, Wei Wang, Suyu Dong, Kuanquan Wang, Ping Xuan, Xianyu Zhang, Xin Gao
DrugMGR: a deep bioactive molecule binding method to identify compounds targeting proteins. Bioinformatics (Oxford, England) 40 (4) (2024)
Haoyang Li, Yingxin Lin, Wenjia He, Wenkai Han, Xiaopeng Xu, Chencheng Xu, Elva Gao, Hongyu Zhao, Xin Gao
SANTO: a coarse-to-fine alignment and stitching method for spatial omics. Nature communications 15 (1) (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han
Accurate global and local 3D alignment of cryo-EM density maps using local spatial structural features. Nature communications 15 (1) (2024)
Xiaopeng Xu, Chencheng Xu, Wenjia He, Lesong Wei, Haoyang Li, Juexiao Zhou, Ruochi Zhang, Yu Wang, Yuanpeng Xiong, Xin Gao
HELM-GPT: de novo macrocyclic peptide design using generative pre-trained transformer. Bioinformatics (Oxford, England) 40 (6) (2024)
Maofei Chen, Yutong Song, Sensen Zhang, Yitang Zhang, Xudong Chen, Minghui Zhang, Meng Han, Xin Gao, Sai Li, Maojun Yang
Molecular architecture of mammalian pyruvate dehydrogenase complex. Protein & cell (2024)
Haoyang Li, Yingxin Lin, Wenjia He, Wenkai Han, Xiaopeng Xu, Chencheng Xu, Elva Gao, Hongyu Zhao, Xin Gao
SANTO: a coarse-to-fine alignment and stitching method for spatial omics. Nature communications 15 (1) (2024)
Haoyang Li, Yingxin Lin, Wenjia He, Wenkai Han, Xiaopeng Xu, Chencheng Xu, Elva Gao, Hongyu Zhao, Xin Gao
SANTO: a coarse-to-fine alignment and stitching method for spatial omics. Nature communications 15 (1) (2024)
Tiantian Xu, Yongfang Li, Xin Gao, Lu Zhang
Understanding the Fast-Triggering Unfolding Dynamics of FK-11 upon Photoexcitation of Azobenzene. The journal of physical chemistry letters 15 (13) (2024)
Juexiao Zhou, Siyuan Chen, Yulian Wu, Haoyang Li, Bin Zhang, Longxi Zhou, Yan Hu, Zihang Xiang, Zhongxiao Li, Ningning Chen, Wenkai Han, Chencheng Xu, Di Wang, Xin Gao
PPML-Omics: A privacy-preserving federated machine learning method protects patients' privacy in omic data. Science advances 10 (5) (2024)
Xin Xia, Yiping Liu, Chunhou Zheng, Xingyi Zhang, Qingwen Wu, Xin Gao, Xiangxiang Zeng, Yan-Sen Su
Evolutionary Multiobjective Molecule Optimization in an Implicit Chemical Space. Journal of chemical information and modeling 64 (13) (2024)
Junkang Wei, Jin Xiao, Siyuan Chen, Licheng Zong, Xin Gao, Yu Li
ProNet DB: a proteome-wise database for protein surface property representations and RNA-binding profiles. Database : the journal of biological databases and curation 2024 (2024)
Xin Xia, Yiping Liu, Chunhou Zheng, Xingyi Zhang, Qingwen Wu, Xin Gao, Xiangxiang Zeng, Yan-Sen Su
Evolutionary Multiobjective Molecule Optimization in an Implicit Chemical Space. Journal of chemical information and modeling (2024)
Juexiao Zhou, Xiaonan He, Liyuan Sun, Jiannan Xu, Xiuying Chen, Yuetan Chu, Longxi Zhou, Xingyu Liao, Bin Zhang, Shawn Afvari, Xin Gao
Pre-trained multimodal large language model enhances dermatological diagnosis using SkinGPT-4. Nature communications 15 (1) (2024)
Hendrik N J Kuijer, Jian You Wang, Salim Bougouffa, Michael Abrouk, Muhammad Jamil, Roberto Incitti, Intikhab S Alam, Aparna Balakrishna, Derry Alvarez, Cristina Votta, Guan-Ting Erica Chen, Claudio Martínez, Andrea Zuccolo, Lamis Berqdar, Salim Sioud, Valentina Fiorilli, Angel R de Lera, Luisa Lanfranco, Takashi Gojobori, Rod A Wing, Simon G Krattinger, Xin Gao, Salim Al-Babili
Chromosome-scale pearl millet genomes reveal CLAMT1b as key determinant of strigolactone pattern and Striga susceptibility. Nature communications 15 (1) (2024)
Huiqiang Cai, Bin Zhang, Johanne Ahrenfeldt, Justin V Joseph, Maria Riedel, Zongliang Gao, Sofie K Thomsen, Ditte S Christensen, Rasmus O Bak, Henrik Hager, Mikkel H Vendelbo, Xin Gao, Nicolai Juul Birkbak, Martin K Thomsen
CRISPR/Cas9 model of prostate cancer identifies Kmt2c deficiency as a metastatic driver by Odam/Cabs1 gene cluster expression. Nature communications 15 (1) (2024)
Juexiao Zhou, Siyuan Chen, Yulian Wu, Haoyang Li, Bin Zhang, Longxi Zhou, Yan Hu, Zihang Xiang, Zhongxiao Li, Ningning Chen, Wenkai Han, Chencheng Xu, Di Wang, Xin Gao
PPML-Omics: A privacy-preserving federated machine learning method protects patients' privacy in omic data. Science advances 10 (5) (2024)
Tiantian Xu, Yongfang Li, Xin Gao, Lu Zhang
Understanding the Fast-Triggering Unfolding Dynamics of FK-11 upon Photoexcitation of Azobenzene. The journal of physical chemistry letters (2024)
Emile Cavalet-Giorsa, Andrea González-Muñoz, Naveenkumar Athiyannan, Samuel Holden, Adil Salhi, Catherine Gardener, Jesús Quiroz-Chávez, Samira M Rustamova, Ahmed Fawzy Elkot, Mehran Patpour, Awais Rasheed, Long Mao, Evans S Lagudah, Sambasivam K Periyannan, Mingzhe Zhang, Axel Himmelbach, Jochen Christoph Reif, Manuela Knauft, Martin Mascher, Nils Stein, Noam Chayut, Sreya Ghosh, Dragan Perovic, Alexander Putra, Ana B Perera, Chia-Yi Hu, Guotai Yu, Hanin Ibrahim Ahmed, Konstanze D Laquai, Luis F Rivera, Renjie Chen, Yajun Wang, Xin Gao, Sanzhen Liu, W John Raupp, Eric L Olson, Jong-Yeol Lee, Parveen Chhuneja, Satinder Kaur, Peng Zhang, Robert F Park, Yi Ding, Deng-Cai Liu, Wanlong Li, Firuza Y Nasyrova, Jan Dvorak, Mehrdad Abbasi, Meng Li, Naveen Kumar, Wilku B Meyer, Willem H P Boshoff, Brian J Steffenson, Oadi Matny, Parva K Sharma, Vijay K Tiwari, Surbhi Grewal, Curtis J Pozniak, Harmeet Singh Chawla, Jennifer Ens, Luke T Dunning, James A Kolmer, Gerard R Lazo, Steven S Xu, Yong Q Gu, Xianyang Xu, Cristobal Uauy, Michael Abrouk, Salim Bougouffa, Gurcharn S Brar, Brande B H Wulff, Simon G Krattinger
Origin and evolution of the bread wheat D genome. Nature (2024)
Bin Liu, Yanping Qi, Xiaowei Wang, Xin Gao, Yuan Yao, Lu Zhang
Investigation of the Flipping Dynamics of 1, N6-Ethenoadenine in Alkyladenine DNA Glycosylase. The journal of physical chemistry. B 128 (7) (2024)
Kang Hu, Peng Ni, Minghua Xu, You Zou, Jianye Chang, Xin Gao, Yaohang Li, Jue Ruan, Bin Hu, Jian-Xin Wang
HiTE: a fast and accurate dynamic boundary adjustment approach for full-length transposable element detection and annotation. Nature communications 15 (1) (2024)
Bin Liu, Yanping Qi, Xiaowei Wang, Xin Gao, Yuan Yao, Lu Zhang
Investigation of the Flipping Dynamics of 1, N6-Ethenoadenine in Alkyladenine DNA Glycosylase. The journal of physical chemistry. B 128 (7) (2024)
Kexin Shi, Yuanpeng Xiong, Yu Wang, Yifan Deng, Wenjia Wang, Bingyi Jing, Xin Gao
PractiCPP: a deep learning approach tailored for extremely imbalanced datasets in cell-penetrating peptide prediction. Bioinformatics (Oxford, England) 40 (2) (2024)
Juexiao Zhou, Xiaonan He, Liyuan Sun, Jiannan Xu, Xiuying Chen, Yuetan Chu, Longxi Zhou, Xingyu Liao, Bin Zhang, Shawn Afvari, Xin Gao
Pre-trained multimodal large language model enhances dermatological diagnosis using SkinGPT-4. Nature communications 15 (1) (2024)
Qiang Yang, Long Xu, Weihe Dong, Xiaokun Li, Kuanquan Wang, Suyu Dong, Xianyu Zhang, Tiansong Yang, Feng Jiang, Bin Zhang, Gongning Luo, Xin Gao, Guohua Wang
HLAIImaster: a deep learning method with adaptive domain knowledge predicts HLA II neoepitope immunogenic responses. Briefings in bioinformatics 25 (4) (2024)
Qiang Yang, Long Xu, Weihe Dong, Xiaokun Li, Kuanquan Wang, Suyu Dong, Xianyu Zhang, Tiansong Yang, Feng Jiang, Bin Zhang, Gongning Luo, Xin Gao, Guohua Wang
HLAIImaster: a deep learning method with adaptive domain knowledge predicts HLA II neoepitope immunogenic responses. Briefings in bioinformatics 25 (4) (2024)
Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han
Accurate global and local 3D alignment of cryo-EM density maps using local spatial structural features. Nature communications 15 (1) (2024)
Juexiao Zhou, Siyuan Chen, Yulian Wu, Haoyang Li, Bin Zhang, Longxi Zhou, Yan Hu, Zihang Xiang, Zhongxiao Li, Ningning Chen, Wenkai Han, Chencheng Xu, Di Wang, Xin Gao
PPML-Omics: A privacy-preserving federated machine learning method protects patients' privacy in omic data. Science advances 10 (5) (2024)
Haoyang Li, Juexiao Zhou, Zhongxiao Li, Siyuan Chen, Xingyu Liao, Bin Zhang, Ruochi Zhang, Yu Wang, Shiwei Sun, Xin Gao
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics. Nature communications 14 (1) (2023)
Bin Zhang, Xin Gao
Deciphering DNA variant-associated aberrant splicing with the aid of RNA sequencing. Nature genetics (2023)
Haoyang Li, Juexiao Zhou, Zhongxiao Li, Siyuan Chen, Xingyu Liao, Bin Zhang, Ruochi Zhang, Yu Wang, Shiwei Sun, Xin Gao
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics. Nature communications 14 (1) (2023)
Slimane Laref, Bin Wang, Xin Gao, Takashi Gojobori
Computational Studies of Auto-Active van der Waals Interaction Molecules on Ultra-Thin Black-Phosphorus Film. Molecules (Basel, Switzerland) 28 (2) (2023)
Bin Zhang, Xin Gao
Publisher Correction: Deciphering DNA variant-associated aberrant splicing with the aid of RNA sequencing. Nature genetics (2023)
Wenkai Han, Ningning Chen, Xinzhou Xu, Adil Sahil, Juexiao Zhou, Zhongxiao Li, Huawen Zhong, Elva Gao, Ruochi Zhang, Yu Wang, Shiwei Sun, Peter Pak-Hang Cheung, Xin Gao
Predicting the antigenic evolution of SARS-COV-2 with deep learning. Nature communications 14 (1) (2023)
Xiaokun Li, Qiang Yang, Gongning Luo, Long Xu, Weihe Dong, Wei Wang, Suyu Dong, Kuanquan Wang, Ping Xuan, Xin Gao
SAGDTI: self-attention and graph neural network with multiple information representations for the prediction of drug-target interactions. Bioinformatics advances 3 (1) (2023)
Xiaowei Wang, Tiantian Xu, Yuan Yao, Peter Pak-Hang Cheung, Xin Gao, Lu Zhang
SARS-CoV-2 RNA-Dependent RNA Polymerase Follows Asynchronous Translocation Pathway for Viral Transcription and Replication. The journal of physical chemistry letters (2023)
Slimane Laref, Bin Wang, Xin Gao, Takashi Gojobori
Computational Studies of Auto-Active van der Waals Interaction Molecules on Ultra-Thin Black-Phosphorus Film. Molecules (Basel, Switzerland) 28 (2) (2023)
Injeong Shim, Hiroyuki Kuwahara, Ningning Chen, Mais O Hashem, Lama AlAbdi, Mohamed Abouelhoda, Hong-Hee Won, Pradeep Natarajan, Patrick T Ellinor, Amit V Khera, Xin Gao, Fowzan Sami Alkuraya, Akl C Fahed
Clinical utility of polygenic scores for cardiometabolic disease in Arabs. Nature communications 14 (1) (2023)
Slimane Laref, Bin Wang, Xin Gao, Takashi Gojobori
Computational Studies of Auto-Active van der Waals Interaction Molecules on Ultra-Thin Black-Phosphorus Film. Molecules (Basel, Switzerland) 28 (2) (2023)
Slimane Laref, Bin Wang, Xin Gao, Takashi Gojobori
Computational Studies of Auto-Active van der Waals Interaction Molecules on Ultra-Thin Black-Phosphorus Film. Molecules (Basel, Switzerland) 28 (2) (2023)
Slimane Laref, Fouzi Harrou, Bin Wang, Ying Sun, Amel Laref, Taous-Meriem Laleg-Kirati, Takashi Gojobori, Xin Gao
Synergy of Small Antiviral Molecules on a Black-Phosphorus Nanocarrier: Machine Learning and Quantum Chemical Simulation Insights. Molecules (Basel, Switzerland) 28 (8) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi C Terao, Masato Akiyama, Koichi Matsuda, David E Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J Cox, James A Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nature computational science 3 (5) (2023)
Slimane Laref, Fouzi Harrou, Bin Wang, Ying Sun, Amel Laref, Taous-Meriem Laleg-Kirati, Takashi Gojobori, Xin Gao
Synergy of Small Antiviral Molecules on a Black-Phosphorus Nanocarrier: Machine Learning and Quantum Chemical Simulation Insights. Molecules (Basel, Switzerland) 28 (8) (2023)
Xiaokun Li, Qiang Yang, Gongning Luo, Long Xu, Weihe Dong, Wei Wang, Suyu Dong, Kuanquan Wang, Ping Xuan, Xin Gao
SAGDTI: self-attention and graph neural network with multiple information representations for the prediction of drug-target interactions. Bioinformatics advances 3 (1) (2023)
Slimane Laref, Fouzi Harrou, Bin Wang, Ying Sun, Amel Laref, Taous-Meriem Laleg-Kirati, Takashi Gojobori, Xin Gao
Synergy of Small Antiviral Molecules on a Black-Phosphorus Nanocarrier: Machine Learning and Quantum Chemical Simulation Insights. Molecules (Basel, Switzerland) 28 (8) (2023)
Slimane Laref, Fouzi Harrou, Bin Wang, Ying Sun, Amel Laref, Taous-Meriem Laleg-Kirati, Takashi Gojobori, Xin Gao
Synergy of Small Antiviral Molecules on a Black-Phosphorus Nanocarrier: Machine Learning and Quantum Chemical Simulation Insights. Molecules (Basel, Switzerland) 28 (8) (2023)
Bin Zhang, Xin Gao
Deciphering DNA variant-associated aberrant splicing with the aid of RNA sequencing. Nature genetics 55 (5) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi C Terao, Masato Akiyama, Koichi Matsuda, David E Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J Cox, James A Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nature computational science 3 (5) (2023)
Juexiao Zhou, Haoyang Li, Xingyu Liao, Bin Zhang, Wenjia He, Zhongxiao Li, Longxi Zhou, Xin Gao
A unified method to revoke the private data of patients in intelligent healthcare with audit to forget. Nature communications 14 (1) (2023)
Xingyu Liao, Wufei Zhu, Juexiao Zhou, Haoyang Li, Xiaopeng Xu, Bin Zhang, Xin Gao
Repetitive DNA sequence detection and its role in the human genome. Communications biology 6 (1) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi C Terao, Masato Akiyama, Koichi Matsuda, David E Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J Cox, James A Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nature computational science 3 (5) (2023)
Bin Zhang, Xin Gao
Deciphering DNA variant-associated aberrant splicing with the aid of RNA sequencing. Nature genetics 55 (5) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi C Terao, Masato Akiyama, Koichi Matsuda, David E Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J Cox, James A Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nature computational science 3 (5) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi C Terao, Masato Akiyama, Koichi Matsuda, David E Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J Cox, James A Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nature computational science 3 (5) (2023)
Gengjie Jia, Yu Li, Xue Zhong, Kanix Wang, Milton Pividori, Rabab Alomairy, Aniello Esposito, Hatem Ltaief, Chikashi C Terao, Masato Akiyama, Koichi Matsuda, David E Keyes, Hae Kyung Im, Takashi Gojobori, Yoichiro Kamatani, Michiaki Kubo, Nancy J Cox, James A Evans, Xin Gao, Andrey Rzhetsky
The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci. Nature computational science 3 (5) (2023)
Haoyang Li, Juexiao Zhou, Zhongxiao Li, Siyuan Chen, Xingyu Liao, Bin Zhang, Ruochi Zhang, Yu Wang, Shiwei Sun, Xin Gao
A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics. Nature communications 14 (1) (2023)
Zhen Chen, Xuhan Liu, Pei Zhao, Chen Li, Yanan Wang, Fuyi Li, Tatsuya Akutsu, Chris Bain, Robin B Gasser, Junzhou Li, Zuoren Yang, Xin Gao, Lukasz Kurgan, Jiangning Song
iFeatureOmega: an integrative platform for engineering, visualization and analysis of features from molecular sequences, structural and ligand data sets. Nucleic acids research (2022)
Shuye Tian, Bin Zhang, Yuhao He, Zhiyuan Sun, Jun Li, Yisheng Li, Hongyang Yi, Yan Zhao, Xudong Zou, Yunfei Li, Huanhuan Cui, Liang Fang, Xin Gao, Yuhui Hu, Wei Chen
CRISPR-iPAS: a novel dCAS13-based method for alternative polyadenylation interference. Nucleic acids research 50 (5) (2022)
Xu Yan, Yingfeng Lu, Zhen Li, Qing Wei, Xin Gao, Sheng Wang, Song Wu, Shuguang Cui
PointSite: A Point Cloud Segmentation Tool for Identification of Protein Ligand Binding Atoms. Journal of chemical information and modeling 62 (11) (2022)
Yang Li, Guanyu Qiao, Xin Gao, Guohua Wang
Supervised graph co-contrastive learning for drug-target interaction prediction. Bioinformatics (Oxford, England) 38 (10) (2022)
Satish Chandra, Mahendra Kumar Gourisaria, Harshvardhan Gm, Debanjan Konar, Xin Gao, Tianyang Wang, Min Xu
Prolificacy Assessment of Spermatozoan via State-of-the-Art Deep Learning Frameworks. IEEE access : practical innovations, open solutions 10 (2022)
Yongfang Li, Dong Zhang, Xin Gao, Xiaowei Wang, Lu Zhang
2'- and 3'-Ribose Modifications of Nucleotide Analogues Establish the Structural Basis to Inhibit the Viral Replication of SARS-CoV-2. The journal of physical chemistry letters 13 (18) (2022)
Xueying Luo, Xiaowei Wang, Yuan Yao, Xin Gao, Lu Zhang
Unveiling the "Template-Dependent" Inhibition on the Viral Transcription of SARS-CoV-2. The journal of physical chemistry letters 13 (31) (2022)
Slimane Laref, Bin Wang, Sahika Inal, Saleh A Alghamdi, Xin Gao, Takashi Gojobori
A Peculiar Binding Characterization of DNA (RNA) Nucleobases at MoOS-Based Janus Biosensor: Dissimilar Facets Role on Selectivity and Sensitivity. Biosensors 12 (7) (2022)
Lei Xiong, Kang Tian, Yuzhe Li, Weixi Ning, Xin Gao, Qiangfeng Cliff Zhang
Online single-cell data integration through projecting heterogeneous datasets into a common cell-embedding space. Nature communications 13 (1) (2022)
Haoyang Li, Hanmin Li, Juexiao Zhou, Xin Gao
SD2: spatially resolved transcriptomics deconvolution through integration of dropout and spatial information. Bioinformatics (Oxford, England) 38 (21) (2022)
Chenlong Li, Hongshan Zheng, Jinsheng Xiong, Yuxin Huang, Haoyang Li, Hua Jin, Siqi Ai, Yingjie Wang, Tianqi Su, Guiyin Sun, Xu Xiao, Tianjiao Fu, Yujie Wang, Xin Gao, Peng Liang
miR-596-3p suppresses brain metastasis of non-small cell lung cancer by modulating YAP1 and IL-8. Cell death & disease 13 (8) (2022)
Yu Li, Siyuan Chen, Trisevgeni Rapakoulia, Hiroyuki Kuwahara, Kevin Y Yip, Xin Gao
Deep learning identifies and quantifies recombination hotspot determinants. Bioinformatics (Oxford, England) 38 (10) (2022)
Nanyi Fei, Zhiwu Lu, Yizhao Gao, Guoxing Yang, Yuqi Huo, Jingyuan Wen, Haoyu Lu, Ruihua Song, Xin Gao, Tao Xiang, Hao Sun, Ji-Rong Wen
Towards artificial general intelligence via a multimodal foundation model. Nature communications 13 (1) (2022)
Huanhuan Cui, Hongyang Yi, Hongyu Bao, Ying Tan, Chi Tian, Xinyao Shi, Diwen Gan, Bin Zhang, Weizheng Liang, Rui Chen, Qionghua Zhu, Liang Fang, Xin Gao, Hongda Huang, Rui-Jun Tian, Silke R Sperling, Yuhui Hu, Wei Chen
The SWI/SNF chromatin remodeling factor DPF3 regulates metastasis of ccRCC by modulating TGF-β signaling. Nature communications 13 (1) (2022)
Kanix Wang, Robert Stevens, Halima Alachram, Yu Li, Larisa N Soldatova, Ross King, Sophia Ananiadou, Annika M Schoene, Maolin Li, Fenia Christopoulou, José Luis Ambite, Joel Matthew, Sahil Garg, Ulf Hermjakob, Daniel Marcu, Emily Sheng, Tim Beißbarth, Edgar Wingender, Aram Galstyan, Xin Gao, Brendan Chambers, Weidi Pan, Bohdan B Khomtchouk, James A Evans, Andrey Rzhetsky
NERO: a biomedical named-entity (recognition) ontology with a large, annotated corpus reveals meaningful associations through text embedding. NPJ systems biology and applications 7 (1) (2021)
Ming Fan, Yajing Cui, Chao You, Li Liu, Ya-Jia Gu, Weijun Peng, Qianming Bai, Xin Gao, Lihua Li
Radiogenomic Signatures of Oncotype DX Recurrence Score Enable Prediction of Survival in Estrogen Receptor-Positive Breast Cancer: A Multicohort Study. Radiology (2021)
Xingyu Liao, Kang Hu, Adil Salhi, You Zou, Jian-Xin Wang, Xin Gao
msRepDB: a comprehensive repetitive sequence database of over 80 000 species. Nucleic acids research (2021)

Xin Gao.css-eqlu8i{font-size:small;padding-left:4px;} (X Gao)

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Xin Gao (X Gao)