Matthew J Girgenti (Matthew Girgenti)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 28

Top Topics

Posttraumatic Stress Disorder

Genome Wide Association

Prefrontal Cortex

Hiv Infected Patients

Top Venues

Nature communications

Science (New York, N.Y.)

Translational psychiatry

Research square

This page only lists publications with an associated author ORCID identifier.

Publications

Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning parameters for polygenic risk score methods using GWAS summary statistics from training data. Nature communications 15 (1) (2024)
Prashant S Emani, Jason J Liu, Declan Clarke, Matthew Jensen, Jonathan Warrell, Chirag Gupta, Ran Meng, Che Yu Lee, Siwei Xu, Cagatay Dursun, Shaoke Lou, Yuhang Chen, Zhiyuan Chu, Timur Galeev, Ahyeon Hwang, Yunyang Li, Zhengchang Su, Xiao Zhou, null null, Trygve E Bakken, Jaroslav Bendl, Lucy K Bicks, Tanima Chatterjee, Lijun Cheng, Yuyan Cheng, Yi Dai, Ziheng Duan, Mary Flaherty, John F Fullard, Michael Gancz, Diego Garrido-Martín, Sophia C Gaynor-Gillett, Jennifer Grundman, Natalie Hawken, Ella Henry, Gabriel E Hoffman, Ao Huang, Yunzhe Jiang, Ting Jin, Nikolas L Jorstad, Riki Kawaguchi, Saniya Khullar, Jianyin Liu, Junhao Liu, Shuang Liu, Shaojie Ma, Michael Margolis, Samantha Mazariegos, Jill E Moore, Jennifer R Moran, Eric Nguyen, Nishigandha Phalke, Milos Pjanic, Henry E Pratt, Diana Quintero, Ananya S Rajagopalan, Tiernon R Riesenmy, Nicole Shedd, Manman Shi, Megan Spector, Rosemarie Terwilliger, Kyle J Travaglini, Brie Wamsley, Gaoyuan Wang, Yan Xia, Shaohua Xiao, Andrew C Yang, Suchen Zheng, Michael J Gandal, Donghoon Lee, Ed S Lein, Panagiotis Roussos, Nenad Sestan, Nishigandha Phalke, Kevin P White, Hyejung Won, Matthew J Girgenti, Jing Zhang, Daifeng Wang, Daniel H Geschwind, Mark B Gerstein, null null
Single-cell genomics and regulatory networks for 388 human brains. Science (New York, N.Y.) 384 (6698) (2024)
Wei Jiang, Ling Chen, Matthew J Girgenti, Hongyu Zhao
Tuning Parameters for Polygenic Risk Score Methods Using GWAS Summary Statistics from Training Data. Research square (2023)
Emily M Hicks, Carina Seah, Alanna C Cote, Shelby Marchese, Kristen J Brennand, Eric J Nestler, Matthew J Girgenti, Laura M Huckins
Integrating genetics and transcriptomics to study major depressive disorder: a conceptual framework, bioinformatic approaches, and recent findings. Translational psychiatry 13 (1) (2023)
Gregory Rompala, Sheila Tiemi Nagamatsu, José Jaime Martínez-Magaña, Diana L Nuñez-Ríos, Jiawei Wang, Matthew J Girgenti, John H Krystal, Joshua C Gray, null null, Yasmin L Hurd, Janitza L Montalvo-Ortiz
Profiling neuronal methylome and hydroxymethylome of opioid use disorder in the human orbitofrontal cortex. Nature communications 14 (1) (2023)
Boyoung Lee, Santosh Pothula, Min Wu, Hyeyeon Kang, Matthew J Girgenti, Marina R Picciotto, Ralph J DiLeone, Jane R Taylor, Ronald S Duman
Positive modulation of N-methyl-D-aspartate receptors in the mPFC reduces the spontaneous recovery of fear. Molecular psychiatry 27 (5) (2022)
Shaojie Ma, Mario Škarica, Qian Li, Chuan Xu, Ryan D Risgaard, Andrew T N Tebbenkamp, Xoel Mato Blanco, Rothem Kovner, Željka Krsnik, Xabier de Martin, Victor Luria, Xavier Martí-Pérez, Dan Liang, Amir Karger, Danielle K Schmidt, Zachary Gomez-Sanchez, Cai Qi, Kevin T Gobeske, Sirisha Pochareddy, Ashwin Debnath, Cade J Hottman, Joshua Spurrier, Leon Teo, Anthony G Boghdadi, Jihane Homman-Ludiye, John J Ely, Etienne W Daadi, Da Mi, Marcel M Daadi, Oscar Marin, Patrick R Hof, Mladen-Roko Rasin, James A Bourne, Chet C Sherwood, Gabriel Santpere Baró, Matthew J Girgenti, Stephen M Strittmatter, André M M Sousa, Nenad Sestan
Molecular and cellular evolution of the primate dorsolateral prefrontal cortex. Science (New York, N.Y.) 377 (6614) (2022)
Che Yu Lee, Yuhang Chen, Ziheng Duan, Min Xu, Matthew J Girgenti, Ke Xu, Mark Gerstein, Jing Zhang
Venus: An efficient virus infection detection and fusion site discovery method using single-cell and bulk RNA-seq data. PLoS computational biology 18 (10) (2022)
Orna Issler, Yentl Y van der Zee, Aarthi Ramakrishnan, Sun-Hui Xia, Alexander K Zinsmaier, Chunfeng Tan, Wei Li, Caleb J Browne, Deena M Walker, Marine Salery, Angelica Torres-Berrio, Rita Futamura, Julia E Duffy, Benoit Labonte, Matthew J Girgenti, Carol A Tamminga, Jeffrey L Dupree, Yan Dong, James W Murrough, Li Shen, Eric J Nestler
The long noncoding RNA FEDORA is a cell type- and sex-specific regulator of depression. Science advances 8 (48) (2022)
Janitza L Montalvo-Ortiz, Joshua C Gray, Zhongshan Cheng, Matthew J Girgenti, Ke Xu, Xinyu Zhang, Shyamalika Gopalan, Hang Zhou, Ronald S Duman, Steven M Southwick, John H Krystal, null null, Robert H Pietrzak
Epigenome-wide association study of posttraumatic stress disorder identifies novel loci in U.S. military veterans. Translational psychiatry 12 (1) (2022)
Murray B Stein, Daniel F Levey, Zhongshan Cheng, Frank R Wendt, Kelly Harrington, Gita A Pathak, Kelly Cho, Rachel Quaden, Krishnan Radhakrishnan, Matthew J Girgenti, Yuk-Lam Anne Ho, Daniel C Posner, Mihaela Aslan, Ronald S Duman, Hongyu Zhao, null null, null null, Renato Polimanti, John Concato, Joshua C Gray
Genome-wide association analyses of post-traumatic stress disorder and its symptom subdomains in the Million Veteran Program. Nature genetics 53 (2) (2021)
Matthew J Girgenti, Jiawei Wang, Dingjue Ji, Dianne A Cruz, null null, Murray B Stein, Joshua C Gray, Keith A Young, Bertrand R Huber, Douglas E Williamson, Matthew J Friedman, John H Krystal, Hongyu Zhao, Ronald S Duman
Transcriptomic organization of the human brain in post-traumatic stress disorder. Nature neuroscience 24 (1) (2020)
Shivani Bhatt, Ansel T Hillmer, Matthew J Girgenti, Aleksandra Rusowicz, Michael Kapinos, Nabeel B Nabulsi, Yiyun Huang, David Matuskey, Gustavo A Angarita, Irina Esterlis, Margaret T Davis, Steven M Southwick, Matthew J Friedman, null null, Ronald S Duman, Richard E Carson, John H Krystal, Robert H Pietrzak, Kelly P Cosgrove
PTSD is associated with neuroimmune suppression: evidence from PET imaging and postmortem transcriptomic studies. Nature communications 11 (1) (2020)
Matthew J Girgenti, Eric S Wohleb, Sameet Mehta, Sriparna Ghosal, Manoela V Fogaca, Ronald S Duman
Prefrontal cortex interneurons display dynamic sex-specific stress-induced transcriptomes. Translational psychiatry 9 (1) (2019)