Jian Peng

ORCID

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 18

Top Venues

Nature communications

PLoS computational biology

Nature machine intelligence

bioRxiv : the preprint server for biology

University of Illinois

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Illinois

United States

Assistant Professor :: Computer Science

Publications

Xiaolong Cheng, Zexu Li, Ruocheng Shan, Zihan Li, Shengnan Wang, Wenchang Zhao, Han Zhang, Lumen Chao, Jian Peng, Teng Fei, Wei Li
Modeling CRISPR-Cas13d on-target and off-target effects using machine learning approaches. Nature communications 14 (1) (2023)
Xiaolong Cheng, Zexu Li, Ruocheng Shan, Zihan Li, Shengnan Wang, Wenchang Zhao, Han Zhang, Lumen Chao, Jian Peng, Teng Fei, Wei Li
Modeling CRISPR-Cas13d on-target and off-target effects using machine learning approaches. Nature communications 14 (1) (2023)
Xiaolong Cheng, Zexu Li, Ruocheng Shan, Zihan Li, Shengnan Wang, Wenchang Zhao, Han Zhang, Lumen Chao, Jian Peng, Teng Fei, Wei Li
Modeling CRISPR-Cas13d on-target and off-target effects using machine learning approaches. Nature communications 14 (1) (2023)
Jessica Lacoste, Marzieh Haghighi, Shahan Haider, Zhen-Yuan Lin, Dmitri Segal, Chloe Reno, Wesley Wei Qian, Xueting Xiong, Hamdah Shafqat Abbasi, Pearl V Ryder, Rebecca A Senft, Beth A Cimini, Frederick P Roth, Michael S Calderwood, David Hill, Marc Vidal, S Stephen Yi, Nidhi Sahni, Jian Peng, Anne-Claude Gingras, Shantanu Singh, Anne E Carpenter, Mikko Taipale
Pervasive mislocalization of pathogenic coding variants underlying human disorders. bioRxiv : the preprint server for biology (2023)
Yunan Luo, Yang Liu, Jian Peng
Calibrated geometric deep learning improves kinase-drug binding predictions. Nature machine intelligence 5 (12) (2023)
Xiaolong Cheng, Zexu Li, Ruocheng Shan, Zihan Li, Shengnan Wang, Wenchang Zhao, Han Zhang, Lumen Chao, Jian Peng, Teng Fei, Wei Li
Modeling CRISPR-Cas13d on-target and off-target effects using machine learning approaches. Nature communications 14 (1) (2023)
Yunan Luo, Yang Liu, Jian Peng
Calibrated geometric deep learning improves kinase-drug binding predictions. Nature machine intelligence 5 (12) (2023)
Yunan Luo, Yang Liu, Jian Peng
Calibrated geometric deep learning improves kinase-drug binding predictions. Nature machine intelligence 5 (12) (2023)
Xiaolong Cheng, Zexu Li, Ruocheng Shan, Zihan Li, Shengnan Wang, Wenchang Zhao, Han Zhang, Lumen Chao, Jian Peng, Teng Fei, Wei Li
Modeling CRISPR-Cas13d on-target and off-target effects using machine learning approaches. Nature communications 14 (1) (2023)
Yunan Luo, Guangde Jiang, Tianhao Yu, Yang Liu, Lam Vo, Hantian Ding, Yufeng Su, Wesley Wei Qian, Huimin Zhao, Jian Peng
ECNet is an evolutionary context-integrated deep learning framework for protein engineering. Nature communications 12 (1) (2021)
Xianggen Liu, Yunan Luo, Pengyong Li, Sen Song, Jian Peng
Deep geometric representations for modeling effects of mutations on protein-protein binding affinity. PLoS computational biology 17 (8) (2021)
Fan Zhang, Miao Zhao, Doug R Braun, Spencer S Ericksen, Jeff S Piotrowski, Justin Nelson, Jian Peng, Gene E Ananiev, Shaurya Chanana, Kenneth Barns, Jen Fossen, Hiram Sanchez, Marc G Chevrette, Ilia A Guizei, Changgui Zhao, Le Guo, Weiping Tang, Cameron R Currie, Scott R Rajski, Anjon Audhya, David R Andes, Tim S Bugni
A marine microbiome antifungal targets urgent-threat drug-resistant fungi. Science (New York, N.Y.) 370 (6519) (2021)
Palash Sashittal, Chuanyi Zhang, Jian Peng, Mohammed El-Kebir
Jumper enables discontinuous transcript assembly in coronaviruses. Nature communications 12 (1) (2021)
Jianzhu Ma, Samson H Fong, Yunan Luo, Christopher J Bakkenist, John Paul Shen, Soufiane Mourragui, Lodewyk F A Wessels, Marc Hafner, Roded Sharan, Jian Peng, Trey Ideker
Few-shot learning creates predictive models of drug response that translate from high-throughput screens to individual patients. Nature cancer 2 (2) (2021)
Yiquan Wang, Meng Yuan, Jian Peng, Ian A Wilson, Nicholas C Wu
A large-scale systematic survey of SARS-CoV-2 antibodies reveals recurring molecular features. bioRxiv : the preprint server for biology (2021)
Sheng Wang, Edward W Huang, Junmei Cairns, Jian Peng, Liewei Wang, Saurabh Sinha
Identification of pathways associated with chemosensitivity through network embedding. PLoS computational biology 15 (3) (2019)
Yufeng Su, Yunan Luo, Xiaoming Zhao, Yang Liu, Jian Peng
Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction. PLoS computational biology 15 (9) (2019)
Sheng Wang, Jian Peng
Network-assisted target identification for haploinsufficiency and homozygous profiling screens. PLoS computational biology 13 (6) (2017)

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Publication Activity (10 Years)

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Jian Peng