Nese Kurt Yilmaz (Nese Kurt-Yilmaz)

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 32

Top Topics

Hepatitis C Virus

Structural Basis

Molecular Dynamics

Top Venues

ACS infectious diseases

ACS chemical biology

This page only lists publications with an associated author ORCID identifier.

Publications

Julia M Flynn, Sarah N Zvornicanin, Tenzin Tsepal, Ala M Shaqra, Nese Kurt Yilmaz, Weiping Jia, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Contributions of Hyperactive Mutations in M pro from SARS-CoV-2 to Drug Resistance. ACS infectious diseases 10 (4) (2024)
Jeong Min Lee, Jing Zeng, Pengpeng Liu, My Anh Nguyen, Diego Suchenski Loustaunau, Daniel E Bauer, Nese Kurt Yilmaz, Scot A Wolfe, Celia A Schiffer
Direct delivery of stabilized Cas-embedded base editors achieves efficient and accurate editing of clinically relevant targets. bioRxiv : the preprint server for biology (2024)
Julia M Flynn, Sarah N Zvornicanin, Tenzin Tsepal, Ala M Shaqra, Nese Kurt Yilmaz, Weiping Jia, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Contributions of Hyperactive Mutations in M pro from SARS-CoV-2 to Drug Resistance. ACS infectious diseases (2024)
Julia M Flynn, Sarah N Zvornicanin, Tenzin Tsepal, Ala M Shaqra, Nese Kurt Yilmaz, Weiping Jia, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Contributions of Hyperactive Mutations in M pro from SARS-CoV-2 to Drug Resistance. ACS infectious diseases 10 (4) (2024)
Julia M Flynn, Sarah N Zvornicanin, Tenzin Tsepal, Ala M Shaqra, Nese Kurt Yilmaz, Weiping Jia, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Contributions of Hyperactive Mutations in M pro from SARS-CoV-2 to Drug Resistance. ACS infectious diseases 10 (4) (2024)
Adam K Hedger, Wazo Myint, Jeong Min Lee, Diego Suchenski-Loustaunau, Vanivilasini Balachandran, Ala M Shaqra, Nese Kurt Yilmaz, Jonathan K Watts, Hiroshi Matsuo, Celia A Schiffer
Next generation APOBEC3 inhibitors: Optimally designed for potency and nuclease stability. bioRxiv : the preprint server for biology (2024)
Julia M Flynn, Sarah N Zvornicanin, Tenzin Tsepal, Ala M Shaqra, Nese Kurt Yilmaz, Weiping Jia, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Contributions of Hyperactive Mutations in M pro from SARS-CoV-2 to Drug Resistance. ACS infectious diseases 10 (4) (2024)
Julia M Flynn, Sarah N Zvornicanin, Tenzin Tsepal, Ala M Shaqra, Nese Kurt Yilmaz, Weiping Jia, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Contributions of Hyperactive Mutations in M pro from SARS-CoV-2 to Drug Resistance. ACS infectious diseases 10 (4) (2024)
Sarah N Zvornicanin, Ala M Shaqra, Qiu Yu J Huang, Elizabeth Ornelas, Mallika Moghe, Mark Knapp, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Nese Kurt Yilmaz
Crystal Structures of Inhibitor-Bound Main Protease from Delta- and Gamma-Coronaviruses. Viruses 15 (3) (2023)
Julia M Flynn, Qiu Yu J Huang, Sarah N Zvornicanin, Gila Schneider-Nachum, Ala M Shaqra, Nese Kurt Yilmaz, Stephanie A Moquin, Dustin Dovala, Celia A Schiffer, Daniel N A Bolon
Systematic Analyses of the Resistance Potential of Drugs Targeting SARS-CoV-2 Main Protease. ACS infectious diseases (2023)
Sarah N Zvornicanin, Ala M Shaqra, Qiu Yu J Huang, Elizabeth Ornelas, Mallika Moghe, Mark Knapp, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Nese Kurt Yilmaz
Crystal Structures of Inhibitor-Bound Main Protease from Delta- and Gamma-Coronaviruses. Viruses 15 (3) (2023)
Sarah N Zvornicanin, Ala M Shaqra, Qiu Yu J Huang, Elizabeth Ornelas, Mallika Moghe, Mark Knapp, Stephanie Moquin, Dustin Dovala, Celia A Schiffer, Nese Kurt Yilmaz
Crystal Structures of Inhibitor-Bound Main Protease from Delta- and Gamma-Coronaviruses. Viruses 15 (3) (2023)
Ala M Shaqra, Sarah N Zvornicanin, Qiu Yu J Huang, Gordon J Lockbaum, Mark Knapp, Laura Tandeske, David T Bakan, Julia M Flynn, Daniel N A Bolon, Stephanie Moquin, Dustin Dovala, Nese Kurt Yilmaz, Celia A Schiffer
Defining the substrate envelope of SARS-CoV-2 main protease to predict and avoid drug resistance. Nature communications 13 (1) (2022)
Gordon J Lockbaum, Mina Henes, Jeong Min Lee, Jennifer Timm, Ellen A Nalivaika, Paul R Thompson, Nese Kurt Yilmaz, Celia A Schiffer
Pan-3C Protease Inhibitor Rupintrivir Binds SARS-CoV-2 Main Protease in a Unique Binding Mode. Biochemistry 60 (39) (2021)
Nese Kurt Yilmaz, Celia A Schiffer
Introduction: Drug Resistance. Chemical reviews 121 (6) (2021)
Ashley N Matthew, Florian Leidner, Gordon J Lockbaum, Mina Henes, Jacqueto Zephyr, Shurong Hou, Desaboini Nageswara Rao, Jennifer Timm, Linah N Rusere, Debra A Ragland, Janet L Paulsen, Kristina Prachanronarong, Djade I Soumana, Ellen A Nalivaika, Nese Kurt Yilmaz, Akbar Ali, Celia A Schiffer
Drug Design Strategies to Avoid Resistance in Direct-Acting Antivirals and Beyond. Chemical reviews 121 (6) (2021)
Florian Leidner, Nese Kurt Yilmaz, Celia A Schiffer
Deciphering Antifungal Drug Resistance in Pneumocystis jirovecii DHFR with Molecular Dynamics and Machine Learning. Journal of chemical information and modeling 61 (6) (2021)
Desaboini Nageswara Rao, Jacqueto Zephyr, Mina Henes, Elise T Chan, Ashley N Matthew, Adam K Hedger, Hasahn L Conway, Mohsan Saeed, Alicia Newton, Christos J Petropoulos, Wei Huang, Nese Kurt Yilmaz, Celia A Schiffer, Akbar Ali
Discovery of Quinoxaline-Based P1-P3 Macrocyclic NS3/4A Protease Inhibitors with Potent Activity against Drug-Resistant Hepatitis C Virus Variants. Journal of medicinal chemistry 64 (16) (2021)
Gordon J Lockbaum, Mina Henes, Nathaniel Talledge, Linah N Rusere, Klajdi Kosovrasti, Ellen A Nalivaika, Mohan Somasundaran, Akbar Ali, Louis M Mansky, Nese Kurt Yilmaz, Celia A Schiffer
Inhibiting HTLV-1 Protease: A Viable Antiviral Target. ACS chemical biology 16 (3) (2021)
Florian Leidner, Nese Kurt Yilmaz, Celia A Schiffer
Deciphering Complex Mechanisms of Resistance and Loss of Potency through Coupled Molecular Dynamics and Machine Learning. Journal of chemical theory and computation 17 (4) (2021)
Jennifer Timm, Klajdi Kosovrasti, Mina Henes, Florian Leidner, Shurong Hou, Akbar Ali, Nese Kurt Yilmaz, Celia A Schiffer
Molecular and Structural Mechanism of Pan-Genotypic HCV NS3/4A Protease Inhibition by Glecaprevir. ACS chemical biology 15 (2) (2020)
Linah N Rusere, Gordon J Lockbaum, Mina Henes, Sook-Kyung Lee, Ean Spielvogel, Desaboini Nageswara Rao, Klajdi Kosovrasti, Ellen A Nalivaika, Ronald Swanstrom, Nese Kurt Yilmaz, Celia A Schiffer, Akbar Ali
Structural Analysis of Potent Hybrid HIV-1 Protease Inhibitors Containing Bis-tetrahydrofuran in a Pseudosymmetric Dipeptide Isostere. Journal of medicinal chemistry 63 (15) (2020)
Florian Leidner, Nese Kurt Yilmaz, Celia A Schiffer
Target-Specific Prediction of Ligand Affinity with Structure-Based Interaction Fingerprints. Journal of chemical information and modeling 59 (9) (2019)
Linah N Rusere, Gordon J Lockbaum, Sook-Kyung Lee, Mina Henes, Klajdi Kosovrasti, Ean Spielvogel, Ellen A Nalivaika, Ronald Swanstrom, Nese Kurt Yilmaz, Celia A Schiffer, Akbar Ali
HIV-1 Protease Inhibitors Incorporating Stereochemically Defined P2' Ligands To Optimize Hydrogen Bonding in the Substrate Envelope. Journal of medicinal chemistry 62 (17) (2019)
Mina Henes, Gordon J Lockbaum, Klajdi Kosovrasti, Florian Leidner, Gily S Nachum, Ellen A Nalivaika, Sook-Kyung Lee, Ean Spielvogel, Shuntai Zhou, Ronald Swanstrom, Daniel N A Bolon, Nese Kurt Yilmaz, Celia A Schiffer
Picomolar to Micromolar: Elucidating the Role of Distal Mutations in HIV-1 Protease in Conferring Drug Resistance. ACS chemical biology 14 (11) (2019)
Mina Henes, Klajdi Kosovrasti, Gordon J Lockbaum, Florian Leidner, Gily S Nachum, Ellen A Nalivaika, Daniel N A Bolon, Nese Kurt Yilmaz, Celia A Schiffer, Troy W Whitfield
Molecular Determinants of Epistasis in HIV-1 Protease: Elucidating the Interdependence of L89V and L90M Mutations in Resistance. Biochemistry 58 (35) (2019)
Gordon J Lockbaum, Florian Leidner, Linah N Rusere, Mina Henes, Klajdi Kosovrasti, Gily S Nachum, Ellen A Nalivaika, Daniel N A Bolon, Akbar Ali, Nese Kurt Yilmaz, Celia A Schiffer
Correction to Structural Adaptation of Darunavir Analogues against Primary Mutations in HIV-1 Protease. ACS infectious diseases 5 (6) (2019)
Rieko Ishima, Nese Kurt Yilmaz, Celia A Schiffer
NMR and MD studies combined to elucidate inhibitor and water interactions of HIV-1 protease and their modulations with resistance mutations. Journal of biomolecular NMR 73 (6-7) (2019)
Gordon J Lockbaum, Florian Leidner, Linah N Rusere, Mina Henes, Klajdi Kosovrasti, Gily S Nachum, Ellen A Nalivaika, Akbar Ali, Nese Kurt Yilmaz, Celia A Schiffer
Structural Adaptation of Darunavir Analogues against Primary Mutations in HIV-1 Protease. ACS infectious diseases 5 (2) (2018)
Shahid N Khan, John D Persons, Janet L Paulsen, Michel Guerrero, Celia A Schiffer, Nese Kurt Yilmaz, Rieko Ishima
Probing Structural Changes among Analogous Inhibitor-Bound Forms of HIV-1 Protease and a Drug-Resistant Mutant in Solution by Nuclear Magnetic Resonance. Biochemistry 57 (10) (2018)
Debra A Ragland, Troy W Whitfield, Sook-Kyung Lee, Ronald Swanstrom, Konstantin B Zeldovich, Nese Kurt Yilmaz, Celia A Schiffer
Elucidating the Interdependence of Drug Resistance from Combinations of Mutations. Journal of chemical theory and computation 13 (11) (2017)
Janet L Paulsen, Florian Leidner, Debra A Ragland, Nese Kurt Yilmaz, Celia A Schiffer
Interdependence of Inhibitor Recognition in HIV-1 Protease. Journal of chemical theory and computation 13 (5) (2017)
Ayşegül Özen, Kuan-Hung Lin, Nese Kurt Yilmaz, Celia A Schiffer
Structural basis and distal effects of Gag substrate coevolution in drug resistance to HIV-1 protease. Proceedings of the National Academy of Sciences of the United States of America 111 (45) (2014)