Nicola Bordin

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 26

Top Venues

Bioinformatics (Oxford, England)

Biomolecules

Communications biology

Protein science : a publication of the Protein Society

University College London

Universidad Pablo de Olavide (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University College London Feb 01 2019

United Kingdom

Research Associate :: Structural and Molecular Biology

Education History

Universidad Pablo de Olavide Feb 03 2015 - Nov 28 2018

Spain

PHD :: Centro Andaluz de Biologia del Desarollo

Publications

Jude Wells, Alex Hawkins-Hooker, Nicola Bordin, Ian Sillitoe, Brooks Paige, Christine Orengo
Chainsaw: protein domain segmentation with fully convolutional neural networks. Bioinformatics (Oxford, England) 40 (5) (2024)
Nicola Bordin, Harry Scholes, Clemens Rauer, Joel Roca-Martinez, Ian Sillitoe, Christine Orengo
Clustering protein functional families at large scale with hierarchical approaches. Protein science : a publication of the Protein Society 33 (9) (2024)
Jude Wells, Alex Hawkins-Hooker, Nicola Bordin, Ian Sillitoe, Brooks Paige, Christine Orengo
Chainsaw: protein domain segmentation with fully convolutional neural networks. Bioinformatics (Oxford, England) 40 (5) (2024)
Jude Wells, Alex Hawkins-Hooker, Nicola Bordin, Ian Sillitoe, Brooks Paige, Christine Orengo
Chainsaw: protein domain segmentation with fully convolutional neural networks. Bioinformatics (Oxford, England) 40 (5) (2024)
Jude Wells, Alex Hawkins-Hooker, Nicola Bordin, Ian Sillitoe, Brooks Paige, Christine Orengo
Chainsaw: protein domain segmentation with fully convolutional neural networks. Bioinformatics (Oxford, England) 40 (5) (2024)
Nicola Bordin, Harry Scholes, Clemens Rauer, Joel Roca-Martinez, Ian Sillitoe, Christine Orengo
Clustering protein functional families at large scale with hierarchical approaches. Protein science : a publication of the Protein Society 33 (9) (2024)
Jude Wells, Alex Hawkins-Hooker, Nicola Bordin, Ian Sillitoe, Brooks Paige, Christine Orengo
Chainsaw: protein domain segmentation with fully convolutional neural networks. Bioinformatics (Oxford, England) 40 (5) (2024)
Jude Wells, Alex Hawkins-Hooker, Nicola Bordin, Ian Sillitoe, Brooks Paige, Christine Orengo
Chainsaw: protein domain segmentation with fully convolutional neural networks. Bioinformatics (Oxford, England) 40 (5) (2024)
Nicola Bordin, Harry Scholes, Clemens Rauer, Joel Roca-Martinez, Ian Sillitoe, Christine Orengo
Clustering protein functional families at large scale with hierarchical approaches. Protein science : a publication of the Protein Society 33 (9) (2024)
Tolulope Adeyelu, Nicola Bordin, Vaishali P Waman, Marta Sadlej, Ian Sillitoe, Aurelio A Moya-García, Christine A Orengo
KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units. Biomolecules 13 (2) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Tolulope Adeyelu, Nicola Bordin, Vaishali P Waman, Marta Sadlej, Ian Sillitoe, Aurelio A Moya-García, Christine A Orengo
KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units. Biomolecules 13 (2) (2023)
Vamsi Nallapareddy, Nicola Bordin, Ian Sillitoe, Michael Heinzinger, Maria Littmann, Vaishali P Waman, Neeladri Sen, Burkhard Rost, Christine Orengo
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. Bioinformatics (Oxford, England) 39 (1) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Tolulope Adeyelu, Nicola Bordin, Vaishali P Waman, Marta Sadlej, Ian Sillitoe, Aurelio A Moya-García, Christine A Orengo
KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units. Biomolecules 13 (2) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Tolulope Adeyelu, Nicola Bordin, Vaishali P Waman, Marta Sadlej, Ian Sillitoe, Aurelio A Moya-García, Christine A Orengo
KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units. Biomolecules 13 (2) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Vamsi Nallapareddy, Nicola Bordin, Ian Sillitoe, Michael Heinzinger, Maria Littmann, Vaishali P Waman, Neeladri Sen, Burkhard Rost, Christine Orengo
CATHe: detection of remote homologues for CATH superfamilies using embeddings from protein language models. Bioinformatics (Oxford, England) 39 (1) (2023)
Maria Rodriguez-Lopez, Nicola Bordin, Jon Lees, Harry Scholes, Shaimaa Hassan, Quentin Saintain, Stephan Kamrad, Christine A Orengo, Jürg Bähler
Broad functional profiling of fission yeast proteins using phenomics and machine learning. eLife 12 (2023)
Tolulope Adeyelu, Nicola Bordin, Vaishali P Waman, Marta Sadlej, Ian Sillitoe, Aurelio A Moya-García, Christine A Orengo
KinFams: De-Novo Classification of Protein Kinases Using CATH Functional Units. Biomolecules 13 (2) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Michael Heinzinger, Maria Littmann, Ian Sillitoe, Nicola Bordin, Christine Orengo, Burkhard Rost
Contrastive learning on protein embeddings enlightens midnight zone. NAR genomics and bioinformatics 4 (2) (2022)
Neeladri Sen, Ivan Anishchenko, Nicola Bordin, Ian Sillitoe, Sameer Velankar, David Baker, Christine Orengo
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs. Briefings in bioinformatics 23 (4) (2022)
Seán I O'Donoghue, Andrea Schafferhans, Neblina Sikta, Christian Stolte, Sandeep Kaur, Bosco K Ho, Stuart Anderson, James B Procter, Christian Dallago, Nicola Bordin, Matt Adcock, Burkhard Rost
SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms. Molecular systems biology 17 (9) (2021)
Fei Wu, Rinse de Boer, Arjen M Krikken, Arman Akşit, Nicola Bordin, Damien Paul Devos, Ida J van der Klei
Pex24 and Pex32 are required to tether peroxisomes to the ER for organelle biogenesis, positioning and segregation in yeast. Journal of cell science 133 (16) (2020)

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Publication Activity (10 Years)

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Nicola Bordin