Martin Steinegger

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 35

Top Venues

Cold Spring Harbor perspectives in biology

Nature methods

Communications biology

bioRxiv : the preprint server for biology

Seoul National University

Technical University Munich (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Seoul National University Mar 01 2020

South Korea

Assistant Professor :: Biology

Johns Hopkins School of Medicine - Feb 29 2020

United States

Researcher (Postdoctoral fellow) :: Salzberg Lab

Seoul National University

South Korea

Visiting Scientist :: Seok Lab

Max Planck Institute for Biophysical Chemistry

Germany

Researcher :: Söding Lab

Centre for Genomic Regulation

Spain

Visiting Scientist :: Notredame Lab

Seoul National University

South Korea

Researcher :: Seok Lab

University of California San Francisco

United States

Visiting Scientist :: Šali Lab

Medability GmbH

Germany

Scrum Master

Technical University Munich

Germany

Researcher :: Rost Lab

Accenture

Germany

IT Consultant :: Technology Solutions

Education History

Technical University Munich

Germany

PHD

Ludwig-Maximilians-Universität München

Germany

MSC

Ludwig-Maximilians-Universitat Munchen

Germany

BSC :: Bioinformatics

Publications

Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology 16 (5) (2024)
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, Konstantin Schütze, Nathachit Limjunyawong, Daphne Chun-Che Chien, Wayne Denis Monteiro, Lee-Shin Chu, William Morgenlander, Sahana Jayaraman, Sung-Eun Jang, Jeffrey J Gray, Heng Zhu, Xinzhong Dong, Martin Steinegger, H Benjamin Larman
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides. bioRxiv : the preprint server for biology (2024)
Jaebeom Kim, Martin Steinegger
Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA. Nature methods (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology 16 (5) (2024)
Jaebeom Kim, Martin Steinegger
Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA. Nature methods 21 (6) (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology 16 (5) (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology (2024)
Jennifer Lu, Natalia Rincon, Derrick E Wood, Florian P Breitwieser, Christopher Pockrandt, Ben Langmead, Steven L Salzberg, Martin Steinegger
Author Correction: Metagenome analysis using the Kraken software suite. Nature protocols (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology (2024)
Jaebeom Kim, Martin Steinegger
Metabuli: sensitive and specific metagenomic classification via joint analysis of amino acid and DNA. Nature methods 21 (6) (2024)
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, Konstantin Schütze, Nathachit Limjunyawong, Daphne Chun-Che Chien, Wayne Denis Monteiro, Lee-Shin Chu, William Morgenlander, Sahana Jayaraman, Sung-Eun Jang, Jeffrey J Gray, Heng Zhu, Xinzhong Dong, Martin Steinegger, H Benjamin Larman
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides. bioRxiv : the preprint server for biology (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology 16 (5) (2024)
Meng-Hsuan Hsiao, Yang Miao, Zixing Liu, Konstantin Schütze, Nathachit Limjunyawong, Daphne Chun-Che Chien, Wayne Denis Monteiro, Lee-Shin Chu, William Morgenlander, Sahana Jayaraman, Sung-Eun Jang, Jeffrey J Gray, Heng Zhu, Xinzhong Dong, Martin Steinegger, H Benjamin Larman
Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic Peptides. bioRxiv : the preprint server for biology (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petabase-Scale Homology Search for Structure Prediction. Cold Spring Harbor perspectives in biology 16 (5) (2024)
Sewon Lee, Gyuri Kim, Eli Levy Karin, Milot Mirdita, Sukhwan Park, Rayan Chikhi, Artem Babaian, Andriy Kryshtafovych, Martin Steinegger
Petascale Homology Search for Structure Prediction. bioRxiv : the preprint server for biology (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Inigo Barrio-Hernandez, Jingi Yeo, Jürgen Jänes, Milot Mirdita, Cameron L M Gilchrist, Tanita Wein, Mihaly Varadi, Sameer Velankar, Pedro Beltrao, Martin Steinegger
Clustering-predicted structures at the scale of the known protein universe. Nature (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Eunah Jeong, Wonyong Kim, Seungju Son, Sungyeon Yang, Dasom Gwon, Jihee Hong, Yoonhee Cho, Chang-Young Jang, Martin Steinegger, Young Woon Lim, Kyo-Bin Kang
Qualitative metabolomics-based characterization of a phenolic UDP-xylosyltransferase with a broad substrate spectrum from Lentinus brumalis . Proceedings of the National Academy of Sciences of the United States of America 120 (28) (2023)
Michel van Kempen, Stephanie S Kim, Charlotte Tumescheit, Milot Mirdita, Jeongjae Lee, Cameron L M Gilchrist, Johannes Söding, Martin Steinegger
Fast and accurate protein structure search with Foldseek. Nature biotechnology (2023)
Nicola Bordin, Ian Sillitoe, Vamsi Nallapareddy, Clemens Rauer, Su Datt Lam, Vaishali P Waman, Neeladri Sen, Michael Heinzinger, Maria Littmann, Stephanie Kim, Sameer Velankar, Martin Steinegger, Burkhard Rost, Christine A Orengo
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms. Communications biology 6 (1) (2023)
Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki, Lim Heo, Sergey Ovchinnikov, Martin Steinegger
ColabFold: making protein folding accessible to all. Nature methods 19 (6) (2022)
Mihaly Varadi, Sreenath Nair, Ian Sillitoe, Gerardo Tauriello, Stephen Anyango, Stefan Bienert, Clemente Borges, Mandar S Deshpande, Tim Green, Demis Hassabis, Andras Hatos, Tamás Hegedűs, Maarten L Hekkelman, Robbie P Joosten, John M Jumper, Agata Laydon, Dmitry S Molodenskiy, Damiano Piovesan, Edoardo Salladini, Steven L Salzberg, Markus J Sommer, Martin Steinegger, Erzsebet Suhajda, Dmitri I Svergun, Luiggi Tenorio-Ku, Silvio C E Tosatto, Kathryn Tunyasuvunakool, Andrew Mark Waterhouse, Augustin Žídek, Torsten Schwede, Christine A Orengo, Sameer Velankar
3D-Beacons: decreasing the gap between protein sequences and structures through a federated network of protein structure data resources. GigaScience 11 (2022)
John M Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A A Kohl, Andrew J Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, David Silver, Oriol Vinyals, Andrew W Senior, Koray Kavukcuoglu, Pushmeet Kohli, Demis Hassabis
Applying and improving AlphaFold at CASP14. Proteins 89 (12) (2022)
Jennifer Lu, Natalia Rincon, Derrick E Wood, Florian P Breitwieser, Christopher Pockrandt, Ben Langmead, Steven L Salzberg, Martin Steinegger
Metagenome analysis using the Kraken software suite. Nature protocols 17 (12) (2022)
Dongwook Kim, Cameron L M Gilchrist, Jongsik Chun, Martin Steinegger
UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi. Nucleic acids research (2022)
John M Jumper, Richard Evans, Alexander Pritzel, Tim Green, Michael Figurnov, Olaf Ronneberger, Kathryn Tunyasuvunakool, Russ Bates, Augustin Žídek, Anna Potapenko, Alex Bridgland, Clemens Meyer, Simon A A Kohl, Andrew J Ballard, Andrew Cowie, Bernardino Romera-Paredes, Stanislav Nikolov, Rishub Jain, Jonas Adler, Trevor Back, Stig Petersen, David Reiman, Ellen Clancy, Michal Zielinski, Martin Steinegger, Michalina Pacholska, Tamas Berghammer, Sebastian Bodenstein, David Silver, Oriol Vinyals, Andrew W Senior, Koray Kavukcuoglu, Pushmeet Kohli, Demis Hassabis
Highly accurate protein structure prediction with AlphaFold. Nature 596 (7873) (2021)
Arnthór Aevarsson, Anna-Karina Kaczorowska, Björn Thor Adalsteinsson, Josefin Ahlqvist, Salam Al-Karadaghi, Joseph Altenbuchner, Hasan Arsin, Úlfur Áugúst Átlasson, David Brandt, Magdalena Cichowicz-Cieślak, Katy A S Cornish, Jérémy Courtin, Slawomir Dabrowski, Håkon Dahle, Samia Djeffane, Sebastian Dorawa, Julia Dusaucy, Francois Enault, Anita-Elin Fedøy, Stefanie Freitag-Pohl, Olafur H Fridjonsson, Clovis Galiez, Eirin Glomsaker, Mickael Guérin, Sigurd E Gundesø, Elisabet E Gudmundsdóttir, Hördur Gudmundsson, Maria Håkansson, Christian Henke, Alexandra Helleux, Jørn Remi Henriksen, Sigrídur Hjörleifdóttir, Gudmundur O Hreggvidsson, Andrius Jasilionis, Annika Jochheim, Ilmur Jónsdóttir, Lilja Björk Jónsdóttir, Agata Jurczak-Kurek, Tadeusz Kaczorowski, Jörn Kalinowski, Lukasz Pawel Kozlowski, Mart Krupovic, Karolina Kwiatkowska-Semrau, Olav Lanes, Joanna Lange, Julien Lebrat, Javier Linares-Pastén, Ying Liu, Steffen A Lorentsen, Tobias Lutterman, Thibaud Mas, William Merré, Milot Mirdita, Agnieszka Morzywołek, Eric Olo Ndela, Eva Nordberg Karlsson, Edda Olgudóttir, Cathrine Pedersen, Francine Perler, Sólveig K Pétursdóttir, Magdalena Plotka, Ehmke Pohl, David Prangishvili, Jessica L Ray, Birkir Reynisson, Tara Róbertsdóttir, Ruth-Anne Sandaa, Alexander Sczyrba, Sigurlaug Skírnisdóttir, Johannes Söding, Terese Solstad, Ida H Steen, Sigmar Karl Stefánsson, Martin Steinegger, Katrine Stange Overå, Bernd Striberny, Anders Svensson, Monika Szadkowska, Emma J Tarrant, Paul Terzian, Mathilde Tourigny, Tom van den Bergh, Justine Vanhalst, Jonathan Vincent, Bas Vroling, Björn Walse, Lei Wang, Hildegard Watzlawick, Martin Welin, Olesia Werbowy, Ewa Wons, Ruoshi Zhang
Going to extremes - a metagenomic journey into the dark matter of life. FEMS microbiology letters 368 (12) (2021)
Martin Steinegger, Milot Mirdita, Johannes Söding
Protein-level assembly increases protein sequence recovery from metagenomic samples manyfold. Nature methods 16 (7) (2019)
Martin Steinegger, Johannes Söding
Clustering huge protein sequence sets in linear time. Nature communications 9 (1) (2018)
Martin Steinegger, Johannes Söding
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets. Nature biotechnology 35 (11) (2017)

Martin Steinegger.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Martin Steinegger