Nikolaos Vakirlis (Adekola Owoyemi)

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 22

Top Topics

Genome Wide Association

Saccharomyces Cerevisiae

Top Venues

Nature genetics

Genome research

Genome biology and evolution

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence. Genome biology and evolution 16 (8) (2024)
Nikolaos Vakirlis, Anne Kupczok
Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins. Genome research 34 (6) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence. Genome biology and evolution 16 (8) (2024)
Nikolaos Vakirlis, Anne Kupczok
Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins. Genome research (2024)
Nikolaos Vakirlis, Anne Kupczok
Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins. Genome research 34 (6) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Nikolaos Vakirlis, Anne Kupczok
Large-scale investigation of species-specific orphan genes in the human gut microbiome elucidates their evolutionary origins. Genome research 34 (6) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence. Genome biology and evolution 16 (8) (2024)
Megan Copeland, Shelby Landa, Nikolaos Vakirlis, Michelle M Jonika, Jamie Alfieri, Terrence Sylvester, Zachary Hoover, Carl E Hjelmen, J Spencer Johnston, Bethany R Kyre, Lynne K Rieske, Heath Blackmon, Claudio Casola
Genome assembly of the southern pine beetle ( Dendroctonus frontalis Zimmerman) reveals the origins of gene content reduction in Dendroctonus . bioRxiv : the preprint server for biology (2024)
Megan Copeland, Shelby Landa, Nikolaos Vakirlis, Michelle M Jonika, Jamie Alfieri, Terrence Sylvester, Zachary Hoover, Carl E Hjelmen, J Spencer Johnston, Bethany R Kyre, Lynne K Rieske, Heath Blackmon, Claudio Casola
Genome assembly of the southern pine beetle ( Dendroctonus frontalis Zimmerman) reveals the origins of gene content reduction in Dendroctonus . bioRxiv : the preprint server for biology (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a tool to detect and study de novo gene emergence. Genome biology and evolution (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Finn O Gehlert, Lisa Nickel, Nikolaos Vakirlis, Katrin Hammerschmidt, Herman I Vargas Gebauer, Claudia Kießling, Anne Kupczok, Ruth A Schmitz
Active in vivo translocation of the Methanosarcina mazei Gö1 Casposon. Nucleic acids research (2023)
Emilios Tassios, Christoforos Nikolaou, Nikolaos Vakirlis
Intergenic regions of Saccharomycotina yeasts are enriched in potential to encode transmembrane domains. Molecular biology and evolution (2023)
Yahya Zakaria Abdou Gaafar, Marcel Westenberg, Marleen Botermans, Krizbai László, Kris De Jonghe, Yoika Foucart, Luca Ferretti, Kutnjak Denis, Anja Pecman, Nataša Mehle, Jan F Kreuze, Giovanna Muller, Nikolaos Vakirlis, Despoina Beris, Christina Varveri, Heiko Ziebell
Interlaboratory Comparison Study on Ribodepleted Total RNA High-Throughput Sequencing for Plant Virus Diagnostics and Bioinformatic Competence. Pathogens (Basel, Switzerland) 10 (9) (2021)
Nikolaos Vakirlis, Anne-Ruxandra Carvunis, Aoife McLysaght
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes. eLife 9 (2020)
Nikolaos Vakirlis, Omer Acar, Brian Hsu, Nelson C Coelho, S Branden Van Oss, Aaron Wacholder, Kate Medetgul-Ernar, Ray W Bowman, Cameron P Hines, John Iannotta, Saurin Bipin Parikh, Aoife McLysaght, Carlos Jaime Camacho, Allyson F O'Donnell, Trey Ideker, Anne-Ruxandra Carvunis
De novo emergence of adaptive membrane proteins from thymine-rich genomic sequences. Nature communications 11 (1) (2020)
Nikolaos Vakirlis, Chandre Monerawela, Gavin McManus, Orquidea Ribeiro, Aoife McLysaght, Tharappel James, Ursula Bond
Evolutionary journey and characterisation of a novel pan-gene associated with beer strains of Saccharomyces cerevisiae. Yeast (Chichester, England) 36 (7) (2019)