Joseph Schacherer

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 50

Top Topics

Genome Wide Association

Dna Methylation

Saccharomyces Cerevisiae

Top Venues

Nature genetics

Molecular systems biology

This page only lists publications with an associated author ORCID identifier.

Publications

Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature 630 (8015) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Andreas Tsouris, Gauthier Brach, Anne Friedrich, Jing Hou, Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast. Molecular systems biology 20 (4) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature 630 (8015) (2024)
Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Andreas Tsouris, Téo Fournier, Anne Friedrich, Jing Hou, Maitreya J Dunham, Joseph Schacherer
Species-wide survey of the expressivity and complexity spectrum of traits in yeast. PLoS genetics 20 (1) (2024)
Elie M Teyssonniere, Yuichi Shichino, Mari Mito, Anne Friedrich, Shintaro Iwasaki, Joseph Schacherer
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast. Nucleic acids research 52 (5) (2024)
Andreas Tsouris, Gauthier Brach, Anne Friedrich, Jing Hou, Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast. Molecular systems biology (2024)
Elie Marcel Teyssonnière, Pauline Trébulle, Julia Muenzner, Victor Loegler, Daniela Ludwig, Fatma Amari, Michael Mülleder, Anne Friedrich, Jing Hou, Markus Ralser, Joseph Schacherer
Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast. Proceedings of the National Academy of Sciences of the United States of America 121 (19) (2024)
Elie Marcel Teyssonnière, Pauline Trébulle, Julia Muenzner, Victor Loegler, Daniela Ludwig, Fatma Amari, Michael Mülleder, Anne Friedrich, Jing Hou, Markus Ralser, Joseph Schacherer
Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast. Proceedings of the National Academy of Sciences of the United States of America 121 (19) (2024)
Andreas Tsouris, Gauthier Brach, Anne Friedrich, Jing Hou, Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast. Molecular systems biology (2024)
Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature 630 (8015) (2024)
Andreas Tsouris, Gauthier Brach, Anne Friedrich, Jing Hou, Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast. Molecular systems biology (2024)
Andreas Tsouris, Téo Fournier, Anne Friedrich, Jing Hou, Maitreya J Dunham, Joseph Schacherer
Species-wide survey of the expressivity and complexity spectrum of traits in yeast. PLoS genetics 20 (1) (2024)
Elie M Teyssonniere, Yuichi Shichino, Mari Mito, Anne Friedrich, Shintaro Iwasaki, Joseph Schacherer
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast. Nucleic acids research 52 (5) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics (2024)
Elie M Teyssonniere, Yuichi Shichino, Mari Mito, Anne Friedrich, Shintaro Iwasaki, Joseph Schacherer
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast. Nucleic acids research (2024)
Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature 630 (8015) (2024)
Andreas Tsouris, Gauthier Brach, Anne Friedrich, Jing Hou, Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast. Molecular systems biology 20 (4) (2024)
Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature (2024)
Andreas Tsouris, Gauthier Brach, Anne Friedrich, Jing Hou, Joseph Schacherer
Diallel panel reveals a significant impact of low-frequency genetic variants on gene expression variation in yeast. Molecular systems biology 20 (4) (2024)
Elie Marcel Teyssonnière, Pauline Trébulle, Julia Muenzner, Victor Loegler, Daniela Ludwig, Fatma Amari, Michael Mülleder, Anne Friedrich, Jing Hou, Markus Ralser, Joseph Schacherer
Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast. Proceedings of the National Academy of Sciences of the United States of America 121 (19) (2024)
Andreas Tsouris, Téo Fournier, Anne Friedrich, Jing Hou, Maitreya J Dunham, Joseph Schacherer
Species-wide survey of the expressivity and complexity spectrum of traits in yeast. PLoS genetics 20 (1) (2024)
Elie Marcel Teyssonnière, Pauline Trébulle, Julia Muenzner, Victor Loegler, Daniela Ludwig, Fatma Amari, Michael Mülleder, Anne Friedrich, Jing Hou, Markus Ralser, Joseph Schacherer
Species-wide quantitative transcriptomes and proteomes reveal distinct genetic control of gene expression variation in yeast. Proceedings of the National Academy of Sciences of the United States of America 121 (19) (2024)
Andreas Tsouris, Téo Fournier, Anne Friedrich, Jing Hou, Maitreya J Dunham, Joseph Schacherer
Species-wide survey of the expressivity and complexity spectrum of traits in yeast. PLoS genetics 20 (1) (2024)
Julia Muenzner, Pauline Trébulle, Federica Agostini, Henrik Zauber, Christoph B Messner, Martin Steger, Christiane Kilian, Kate Lau, Natalie Barthel, Andrea Lehmann, Kathrin Textoris-Taube, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Matteo De Chiara, Vadim Demichev, Toni I Gossmann, Michael Mulleder, Gianni Liti, Joseph Schacherer, Matthias Selbach, Judith Berman, Markus Ralser
Natural proteome diversity links aneuploidy tolerance to protein turnover. Nature 630 (8015) (2024)
Élodie Caudal, Victor Loegler, Fabien Dutreux, Nikolaos Vakirlis, Élie Teyssonnière, Claudia Caradec, Anne Friedrich, Jing Hou, Joseph Schacherer
Pan-transcriptome reveals a large accessory genome contribution to gene expression variation in yeast. Nature genetics 56 (6) (2024)
Anne Friedrich, Jean-Sébastien Gounot, Andreas Tsouris, Claudine Bleykasten, Kelle Freel, Claudia Caradec, Joseph Schacherer
Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations. Genome biology and evolution 15 (2) (2023)
Anne Friedrich, Jean-Sébastien Gounot, Andreas Tsouris, Claudine Bleykasten, Kelle Freel, Claudia Caradec, Joseph Schacherer
Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations. Genome biology and evolution 15 (2) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Samuel O'Donnell, Jia-Xing Yue, Omar Abou Saada, Nicolas Agier, Claudia Caradec, Thomas Cokelaer, Matteo De Chiara, Stéphane Delmas, Fabien Dutreux, Téo Fournier, Anne Friedrich, Etienne Kornobis, Jing Li, Zepu Miao, Lorenzo Tattini, Joseph Schacherer, Gianni Liti, Gilles Fischer
Telomere-to-telomere assemblies of 142 strains characterize the genome structural landscape in Saccharomyces cerevisiae. Nature genetics (2023)
Anne Friedrich, Jean-Sébastien Gounot, Andreas Tsouris, Claudine Bleykasten, Kelle Freel, Claudia Caradec, Joseph Schacherer
Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations. Genome biology and evolution 15 (2) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Anne Friedrich, Jean-Sébastien Gounot, Andreas Tsouris, Claudine Bleykasten, Kelle Freel, Claudia Caradec, Joseph Schacherer
Contrasting Genomic Evolution Between Domesticated and Wild Kluyveromyces lactis Yeast Populations. Genome biology and evolution 15 (2) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Fabien Dutreux, Abhishek Dutta, Emilien Peltier, Sabrina Bibi-Triki, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Lessons from the meiotic recombination landscape of the ZMM deficient budding yeast Lachancea waltii. PLoS genetics 19 (1) (2023)
Jules Harrouard, Chris Eberlein, Patricia Ballestra, Marguerite Dols-Lafargue, Isabelle Masneuf-Pomarede, Cécile Miot-Sertier, Joseph Schacherer, Warren Albertin
Brettanomyces bruxellensis: Overview of the genetic and phenotypic diversity of an anthropized yeast. Molecular ecology (2022)
Jackson Peter, Anne Friedrich, Gianni Liti, Joseph Schacherer
Extensive simulations assess the performance of genome-wide association mapping in various Saccharomyces cerevisiae subpopulations. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1855) (2022)
Andreas Tsouris, Joseph Schacherer, Olena P Ishchuk
RNA Interference (RNAi ) as a Tool for High-Resolution Phenotypic Screening of the Pathogenic Yeast Candida glabrata. Methods in molecular biology (Clifton, N.J.) 2477 (2022)
Omar Abou Saada, Andreas Tsouris, Chris Eberlein, Anne Friedrich, Joseph Schacherer
nPhase: an accurate and contiguous phasing method for polyploids. Genome biology 22 (1) (2021)
Abhishek Dutta, Fabien Dutreux, Joseph Schacherer
Loss of heterozygosity results in rapid but variable genome homogenization across yeast genetic backgrounds. eLife 10 (2021)
Melania D'Angiolo, Matteo De Chiara, Jia-Xing Yue, Agurtzane Irizar, Simon Stenberg, Karl Persson, Agnès Llored, Benjamin Barré, Joseph Schacherer, Roberto Marangoni, Eric Gilson, Jonas Warringer, Gianni Liti
A yeast living ancestor reveals the origin of genomic introgressions. Nature 587 (7834) (2020)
Téo Fournier, Omar Abou Saada, Jing Hou, Jackson Peter, Elodie Caudal, Joseph Schacherer
Extensive impact of low-frequency variants on the phenotypic landscape at population-scale. eLife 8 (2019)
Christian Brion, Sylvain Legrand, Jackson Peter, Claudia Caradec, David Pflieger, Jing Hou, Anne Friedrich, Bertrand Llorente, Joseph Schacherer
Variation of the meiotic recombination landscape and properties over a broad evolutionary distance in yeasts. PLoS genetics 13 (8) (2017)