Anne-Ruxandra Carvunis

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 21

Top Venues

Genome biology and evolution

Genome biology

Nature ecology & evolution

eLife

University of Pittsburgh

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Pittsburgh

United States

Assistant Professor :: Computational and Systems Biology

Publications

Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence. Genome biology and evolution 16 (8) (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence. Genome biology and evolution 16 (8) (2024)
April Rich, Omer Acar, Anne-Ruxandra Carvunis
Massively integrated coexpression analysis reveals transcriptional regulation, evolution and cellular implications of the yeast noncanonical translatome. Genome biology 25 (1) (2024)
April Rich, Omer Acar, Anne-Ruxandra Carvunis
Massively integrated coexpression analysis reveals transcriptional regulation, evolution and cellular implications of the yeast noncanonical translatome. Genome biology 25 (1) (2024)
April Rich, Omer Acar, Anne-Ruxandra Carvunis
Massively integrated coexpression analysis reveals transcriptional regulation, evolution and cellular implications of the yeast noncanonical translatome. Genome biology 25 (1) (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a Tool to Detect and Study De Novo Gene Emergence. Genome biology and evolution 16 (8) (2024)
Nikolaos Vakirlis, Omer Acar, Vijay Cherupally, Anne-Ruxandra Carvunis
Ancestral Sequence Reconstruction as a tool to detect and study de novo gene emergence. Genome biology and evolution (2024)
Aaron Wacholder, Anne-Ruxandra Carvunis
Biological factors and statistical limitations prevent detection of most noncanonical proteins by mass spectrometry. PLoS biology 21 (12) (2023)
April Rich, Anne-Ruxandra Carvunis
De novo gene increases brain size. Nature ecology & evolution (2023)
April Rich, Anne-Ruxandra Carvunis
De novo gene increases brain size. Nature ecology & evolution 7 (2) (2023)
April Rich, Anne-Ruxandra Carvunis
De novo gene increases brain size. Nature ecology & evolution 7 (2) (2023)
Omer Acar, She Zhang, Ivet Bahar, Anne-Ruxandra Carvunis
Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow. PLoS computational biology 18 (5) (2022)
Jonathan M Mudge, Jorge Ruiz-Orera, John R Prensner, Marie A Brunet, Ferriol Calvet, Irwin Jungreis, Jose Manuel Gonzalez, Michele Magrane, Cholsoon Jang, Jana Felicitas Schulz, Yucheng T Yang, M Mar Albà, Julie L Aspden, Pavel V Baranov, Ariel Alejandro Bazzini, Elspeth A Bruford, Maria Jesus Martin, Lorenzo Calviello, Anne-Ruxandra Carvunis, Jin Chen, Juan Pablo Couso, Eric W Deutsch, Paul Flicek, Adam Frankish, Mark Gerstein, Norbert Hübner, Nicholas T Ingolia, Manolis Kellis, Gerben Menschaert, Robert L Moritz, Uwe Ohler, Xavier Roucou, Alan Saghatelian, Jonathan S Weissman, Sebastiaan van Heesch
Standardized annotation of translated open reading frames. Nature biotechnology 40 (7) (2022)
Saurin B Parikh, Carly Houghton, Stephen Branden Van Oss, Aaron Wacholder, Anne-Ruxandra Carvunis
Origins, evolution, and physiological implications of de novo genes in yeast. Yeast (Chichester, England) 39 (9) (2022)
Jiwon Lee, Aaron Wacholder, Anne-Ruxandra Carvunis
Evolutionary Characterization of the Short Protein SPAAR. Genes 12 (12) (2021)
Nikolaos Vakirlis, Anne-Ruxandra Carvunis, Aoife McLysaght
Synteny-based analyses indicate that sequence divergence is not the main source of orphan genes. eLife 9 (2020)
Diane Marie Keeling, Patricia Garza, Charisse Michelle Nartey, Anne-Ruxandra Carvunis
The meanings of 'function' in biology and the problematic case of de novo gene emergence. eLife 8 (2019)
Peter B Ernst, Anne-Ruxandra Carvunis
Of mice, men and immunity: a case for evolutionary systems biology. Nature immunology 19 (5) (2019)
Stephen Branden Van Oss, Anne-Ruxandra Carvunis
De novo gene birth. PLoS genetics 15 (5) (2019)
Junshi Yazaki, Mary Galli, Alice Y Kim, Kazumasa Nito, Fernando Aleman, Katherine N Chang, Anne-Ruxandra Carvunis, Rosa Quan, Hien Nguyen, Liang Song, José M Alvarez, Shao-Shan Carol Huang, Huaming Chen, Niroshan Ramachandran, Stefan Altmann, Rodrigo A Gutiérrez, David E Hill, Julian I Schroeder, Joanne Chory, Joshua LaBaer, Marc Vidal, Pascal Braun, Joseph R Ecker
Mapping transcription factor interactome networks using HaloTag protein arrays. Proceedings of the National Academy of Sciences of the United States of America 113 (29) (2016)
Anne-Ruxandra Carvunis, Tina Wang, Dylan Skola, Alice Yu, Jonathan Chen, Jason F Kreisberg, Trey Ideker
Evidence for a common evolutionary rate in metazoan transcriptional networks. eLife 4 (2015)

Anne-Ruxandra Carvunis.css-eqlu8i{font-size:small;padding-left:4px;}

Publication Activity (10 Years)

Top Topics

Top Venues

Anne-Ruxandra Carvunis