O H Samuli Ollila

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 25

Top Topics

Molecular Dynamics Simulations

Density Functional Theory

Single Molecule

Helicobacter Pylori

Top Venues

Journal of chemical theory and computation

The journal of physical chemistry. B

Communications chemistry

Nature communications

This page only lists publications with an associated author ORCID identifier.

Publications

Ricky Nencini, Morgan L G Regnier, Sofia M Backlund, Efstathia Mantzari, Cory D Dunn, O H Samuli Ollila
Probing the dynamic landscape of peptides in molecular assemblies by synergized NMR experiments and MD simulations. Communications chemistry 7 (1) (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation 20 (10) (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation 20 (10) (2024)
Anne M Kiirikki, Hanne S Antila, Lara S Bort, Pavel Buslaev, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Rebeca Garcia-Fandino, Ivan Gushchin, Batuhan Kav, Norbert Kučerka, Patrik Kula, Milla Kurki, Alexander Kuzmin, Anusha Lalitha, Fabio Lolicato, Jesper J Madsen, Markus S Miettinen, Cedric Mingham, Luca Monticelli, Ricky Nencini, Alexey M Nesterenko, Thomas J Piggot, Ángel Piñeiro, Nathalie Reuter, Suman Samantray, Fabián Suárez-Lestón, Reza Talandashti, O H Samuli Ollila
Overlay databank unlocks data-driven analyses of biomolecules for all. Nature communications 15 (1) (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation (2024)
Ricky Nencini, Morgan L G Regnier, Sofia M Backlund, Efstathia Mantzari, Cory D Dunn, O H Samuli Ollila
Probing the dynamic landscape of peptides in molecular assemblies by synergized NMR experiments and MD simulations. Communications chemistry 7 (1) (2024)
Anne M Kiirikki, Hanne S Antila, Lara S Bort, Pavel Buslaev, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Rebeca Garcia-Fandino, Ivan Gushchin, Batuhan Kav, Norbert Kučerka, Patrik Kula, Milla Kurki, Alexander Kuzmin, Anusha Lalitha, Fabio Lolicato, Jesper J Madsen, Markus S Miettinen, Cedric Mingham, Luca Monticelli, Ricky Nencini, Alexey M Nesterenko, Thomas J Piggot, Ángel Piñeiro, Nathalie Reuter, Suman Samantray, Fabián Suárez-Lestón, Reza Talandashti, O H Samuli Ollila
Overlay databank unlocks data-driven analyses of biomolecules for all. Nature communications 15 (1) (2024)
Anne M Kiirikki, Hanne S Antila, Lara S Bort, Pavel Buslaev, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Rebeca Garcia-Fandino, Ivan Gushchin, Batuhan Kav, Norbert Kučerka, Patrik Kula, Milla Kurki, Alexander Kuzmin, Anusha Lalitha, Fabio Lolicato, Jesper J Madsen, Markus S Miettinen, Cedric Mingham, Luca Monticelli, Ricky Nencini, Alexey M Nesterenko, Thomas J Piggot, Ángel Piñeiro, Nathalie Reuter, Suman Samantray, Fabián Suárez-Lestón, Reza Talandashti, O H Samuli Ollila
Overlay databank unlocks data-driven analyses of biomolecules for all. Nature communications 15 (1) (2024)
Ricky Nencini, Carmelo Tempra, Denys Biriukov, Miguel Riopedre-Fernandez, Victor Cruces Chamorro, Jakub Polák, Philip E Mason, Daniel Ondo, Jan Heyda, O H Samuli Ollila, Pavel Jungwirth, Matti Javanainen, Hector Martinez-Seara
Effective Inclusion of Electronic Polarization Improves the Description of Electrostatic Interactions: The prosECCo75 Biomolecular Force Field. Journal of chemical theory and computation (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation 20 (10) (2024)
Ricky Nencini, Morgan L G Regnier, Sofia M Backlund, Efstathia Mantzari, Cory D Dunn, O H Samuli Ollila
Probing the dynamic landscape of peptides in molecular assemblies by synergized NMR experiments and MD simulations. Communications chemistry 7 (1) (2024)
Matti Javanainen, Peter Heftberger, Jesper J Madsen, Markus S Miettinen, Georg Pabst, O H Samuli Ollila
Quantitative Comparison against Experiments Reveals Imperfections in Force Fields' Descriptions of POPC-Cholesterol Interactions. Journal of chemical theory and computation (2023)
Carmelo Tempra, O H Samuli Ollila, Matti Javanainen
Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension. Journal of chemical theory and computation 18 (3) (2022)
Ricky Nencini, O H Samuli Ollila
Charged Small Molecule Binding to Membranes in MD Simulations Evaluated against NMR Experiments. The journal of physical chemistry. B 126 (36) (2022)
Amélie Bacle, Pavel Buslaev, Rebeca Garcia-Fandino, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Ivan Yu Gushchin, Matti Javanainen, Anne M Kiirikki, Jesper J Madsen, Josef Melcr, Paula Milán Rodríguez, Markus S Miettinen, O H Samuli Ollila, Chris G Papadopoulos, Antonio Peón, Thomas J Piggot, Ángel Piñeiro, Salla I Virtanen
Inverse Conformational Selection in Lipid-Protein Binding. Journal of the American Chemical Society 143 (34) (2021)
Hanne S Antila, Tiago M Ferreira, O H Samuli Ollila, Markus S Miettinen
Using Open Data to Rapidly Benchmark Biomolecular Simulations: Phospholipid Conformational Dynamics. Journal of chemical information and modeling 61 (2) (2021)
Salla I Virtanen, Anne M Kiirikki, Kornelia M Mikula, Hideo Iwaï, O H Samuli Ollila
Heterogeneous dynamics in partially disordered proteins. Physical chemistry chemical physics : PCCP 22 (37) (2021)
Matti Javanainen, O H Samuli Ollila, Hector Martinez-Seara
Rotational Diffusion of Membrane Proteins in Crowded Membranes. The journal of physical chemistry. B 124 (15) (2020)
Hannes M Beyer, Salla I Virtanen, A Sesilja Aranko, Kornelia M Mikula, George T Lountos, Alexander Wlodawer, O H Samuli Ollila, Hideo Iwaï
The Convergence of the Hedgehog/Intein Fold in Different Protein Splicing Mechanisms. International journal of molecular sciences 21 (21) (2020)
Mark Abraham, Rossen Apostolov, Jonathan Barnoud, Paul Bauer, Christian Blau, Alexandre M J J Bonvin, Matthieu Chavent, John D Chodera, Karmen Čondić-Jurkić, Lucie Delemotte, Helmut Grubmüller, Rebecca J Howard, E Joseph Jordan, Erik Lindahl, O H Samuli Ollila, Jana Selent, Daniel G A Smith, Phillip J Stansfeld, Johanna K S Tiemann, Mikael Trellet, Christopher Woods, Artem Zhmurov
Sharing Data from Molecular Simulations. Journal of chemical information and modeling 59 (10) (2019)
Josef Melcr, Tiago M Ferreira, Pavel Jungwirth, O H Samuli Ollila
Improved Cation Binding to Lipid Bilayers with Negatively Charged POPS by Effective Inclusion of Electronic Polarization. Journal of chemical theory and computation 16 (1) (2019)
Hanne S Antila, Pavel Buslaev, Fernando Favela-Rosales, Tiago M Ferreira, Ivan Yu Gushchin, Matti Javanainen, Batuhan Kav, Jesper J Madsen, Josef Melcr, Markus S Miettinen, Jukka Määttä, Ricky Nencini, O H Samuli Ollila, Thomas J Piggot
Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The journal of physical chemistry. B 123 (43) (2019)
Josef Melcr, Hector Martinez-Seara, Ricky Nencini, Jiří Kolafa, Pavel Jungwirth, O H Samuli Ollila
Accurate Binding of Sodium and Calcium to a POPC Bilayer by Effective Inclusion of Electronic Polarization. The journal of physical chemistry. B 122 (16) (2018)
O H Samuli Ollila, Harri A Heikkinen, Hideo Iwaï
Rotational Dynamics of Proteins from Spin Relaxation Times and Molecular Dynamics Simulations. The journal of physical chemistry. B 122 (25) (2018)
Štěpán Timr, Jan Kadlec, Pavel Srb, O H Samuli Ollila, Pavel Jungwirth
Calcium Sensing by Recoverin: Effect of Protein Conformation on Ion Affinity. The journal of physical chemistry letters 9 (7) (2018)