Jesper J Madsen (J J Madsen)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 32

Top Venues

Journal of chemical theory and computation

bioRxiv : the preprint server for biology

eLife

PLoS computational biology

University of South Florida

Danmarks Tekniske Universitet (BSC)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of South Florida Feb 01 2019

United States

Research assistant professor :: Department of Global Health

The University of Chicago Sep 01 2015 - Sep 01 2018

United States

Postdoc :: Department of Chemistry

Education History

Danmarks Tekniske Universitet

Denmark

BSC

Danmarks Tekniske Universitet

Denmark

MSC :: Technical physics

Danmarks Tekniske Universitet

Denmark

PHD :: Chemistry

Publications

Michael Dominic Sacco, Lauren R Hammond, Radwan E Noor, Dipanwita Bhattacharya, Lily J McKnight, Jesper J Madsen, Xiujun Zhang, Shane G Butler, M Trent Kemp, Aiden C Jaskolka-Brown, Sebastian J Khan, Ioannis Gelis, Prahathees J Eswara, Yu Chen
Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB. eLife 13 (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation 20 (10) (2024)
Jesper J Madsen, Y Zenmei Ohkubo
Elucidating the complex membrane binding of a protein with multiple anchoring domains using extHMMM. PLoS computational biology 20 (7) (2024)
Ran Zhang, Yaosheng Jia, Salvatore J Scaffidi, Jesper J Madsen, Wenqi Yu
Signal peptidase SpsB coordinates staphylococcal cell cycle, surface protein septal trafficking and LTA synthesis. bioRxiv : the preprint server for biology (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation 20 (10) (2024)
Anne M Kiirikki, Hanne S Antila, Lara S Bort, Pavel Buslaev, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Rebeca Garcia-Fandino, Ivan Gushchin, Batuhan Kav, Norbert Kučerka, Patrik Kula, Milla Kurki, Alexander Kuzmin, Anusha Lalitha, Fabio Lolicato, Jesper J Madsen, Markus S Miettinen, Cedric Mingham, Luca Monticelli, Ricky Nencini, Alexey M Nesterenko, Thomas J Piggot, Ángel Piñeiro, Nathalie Reuter, Suman Samantray, Fabián Suárez-Lestón, Reza Talandashti, O H Samuli Ollila
Overlay databank unlocks data-driven analyses of biomolecules for all. Nature communications 15 (1) (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation (2024)
Michael Dominic Sacco, Lauren R Hammond, Radwan E Noor, Dipanwita Bhattacharya, Lily J McKnight, Jesper J Madsen, Xiujun Zhang, Shane G Butler, M Trent Kemp, Aiden C Jaskolka-Brown, Sebastian J Khan, Ioannis Gelis, Prahathees J Eswara, Yu Chen
Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB. eLife 13 (2024)
Michael Dominic Sacco, Lauren R Hammond, Radwan E Noor, Dipanwita Bhattacharya, Lily J McKnight, Jesper J Madsen, Xiujun Zhang, Shane G Butler, M Trent Kemp, Aiden C Jaskolka-Brown, Sebastian J Khan, Ioannis Gelis, Prahathees J Eswara, Yu Chen
Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB. eLife 13 (2024)
Jesper J Madsen, Wenqi Yu
Dynamic Nature of Staphylococcus aureus Type I Signal Peptidases. bioRxiv : the preprint server for biology (2024)
Anne M Kiirikki, Hanne S Antila, Lara S Bort, Pavel Buslaev, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Rebeca Garcia-Fandino, Ivan Gushchin, Batuhan Kav, Norbert Kučerka, Patrik Kula, Milla Kurki, Alexander Kuzmin, Anusha Lalitha, Fabio Lolicato, Jesper J Madsen, Markus S Miettinen, Cedric Mingham, Luca Monticelli, Ricky Nencini, Alexey M Nesterenko, Thomas J Piggot, Ángel Piñeiro, Nathalie Reuter, Suman Samantray, Fabián Suárez-Lestón, Reza Talandashti, O H Samuli Ollila
Overlay databank unlocks data-driven analyses of biomolecules for all. Nature communications 15 (1) (2024)
Anne M Kiirikki, Hanne S Antila, Lara S Bort, Pavel Buslaev, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Rebeca Garcia-Fandino, Ivan Gushchin, Batuhan Kav, Norbert Kučerka, Patrik Kula, Milla Kurki, Alexander Kuzmin, Anusha Lalitha, Fabio Lolicato, Jesper J Madsen, Markus S Miettinen, Cedric Mingham, Luca Monticelli, Ricky Nencini, Alexey M Nesterenko, Thomas J Piggot, Ángel Piñeiro, Nathalie Reuter, Suman Samantray, Fabián Suárez-Lestón, Reza Talandashti, O H Samuli Ollila
Overlay databank unlocks data-driven analyses of biomolecules for all. Nature communications 15 (1) (2024)
Jesper J Madsen, Y Zenmei Ohkubo
Elucidating the complex membrane binding of a protein with multiple anchoring domains using extHMMM. PLoS computational biology 20 (7) (2024)
Jesper J Madsen, Y Zenmei Ohkubo
Elucidating the complex membrane binding of a protein with multiple anchoring domains using extHMMM. PLoS computational biology 20 (7) (2024)
Chen Yun Wen, Yun Lyna Luo, Jesper J Madsen
Optimizing Coarse-Grained Models for Large-Scale Membrane Protein Simulation. bioRxiv : the preprint server for biology (2024)
Michael D Sacco, Lauren R Hammond, Radwan E Noor, Dipanwita Bhattacharya, Lily J McKnight, Jesper J Madsen, Xiujun Zhang, Shane G Butler, M Trent Kemp, Aiden C Jaskolka-Brown, Sebastian J Khan, Ioannis Gelis, Prahathees J Eswara, Yu Chen
Staphylococcus aureus FtsZ and PBP4 bind to the conformationally dynamic N-terminal domain of GpsB. eLife 13 (2024)
Eric M Lewandowski, Xiujun Zhang, Haozhou Tan, Aiden Jaskolka-Brown, Navita Kohaal, Aliaksandra Frazier, Jesper J Madsen, Lian M C Jacobs, Jun Wang, Yu Chen
Distal Protein-Protein Interactions Contribute to SARS-CoV-2 Main Protease Substrate Binding and Nirmatrelvir Resistance. bioRxiv : the preprint server for biology (2024)
Jesper J Madsen, Wenqi Yu
Dynamic Nature of Staphylococcus aureus Type I Signal Peptidases. bioRxiv : the preprint server for biology (2024)
Hanne S Antila, Sneha Dixit, Batuhan Kav, Jesper J Madsen, Markus S Miettinen, O H Samuli Ollila
Evaluating Polarizable Biomembrane Simulations against Experiments. Journal of chemical theory and computation 20 (10) (2024)
Jesús Giraldo, Jesper J Madsen, Xudong Wang, Lei Wang, Cheng Zhang, Libin Ye
A 19 F-qNMR-Guided Mathematical Model for G Protein-Coupled Receptor Signaling . Molecular pharmacology (2023)
Matti Javanainen, Peter Heftberger, Jesper J Madsen, Markus S Miettinen, Georg Pabst, O H Samuli Ollila
Quantitative Comparison against Experiments Reveals Imperfections in Force Fields' Descriptions of POPC-Cholesterol Interactions. Journal of chemical theory and computation (2023)
Jesper J Madsen, Libin Ye, Thomas M Frimurer, Ole H Olsen
Mechanistic basis of GPCR activation explored by ensemble refinement of crystallographic structures. Protein science : a publication of the Protein Society 31 (11) (2022)
Amélie Bacle, Pavel Buslaev, Rebeca Garcia-Fandino, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Ivan Yu Gushchin, Matti Javanainen, Anne M Kiirikki, Jesper J Madsen, Josef Melcr, Paula Milán Rodríguez, Markus S Miettinen, O H Samuli Ollila, Chris G Papadopoulos, Antonio Peón, Thomas J Piggot, Ángel Piñeiro, Salla I Virtanen
Inverse Conformational Selection in Lipid-Protein Binding. Journal of the American Chemical Society 143 (34) (2021)
Y Zenmei Ohkubo, Jesper J Madsen
Uncovering Membrane-Bound Models of Coagulation Factors by Combined Experimental and Computational Approaches. Thrombosis and haemostasis 121 (9) (2021)
Jesper J Madsen, Ole H Olsen
Conformational Plasticity-Rigidity Axis of the Coagulation Factor VII Zymogen Elucidated by Atomistic Simulations of the N-Terminally Truncated Factor VIIa Protease Domain. Biomolecules 11 (4) (2021)
Xudong Wang, Wenjie Zhao, M Sameer Al-Abdul-Wahid, Yiming Lu, Tao Cheng, Jesper J Madsen, Libin Ye
Trifluorinated Keto-Enol Tautomeric Switch in Probing Domain Rotation of a G Protein-Coupled Receptor. Bioconjugate chemistry 32 (1) (2020)
Agnieszka Martyna, Basma Bahsoun, Jesper J Madsen, Frederic St J S Jackson, Matthew D Badham, Gregory A Voth, Jeremy S Rossman
Cholesterol Alters the Orientation and Activity of the Influenza Virus M2 Amphipathic Helix in the Membrane. The journal of physical chemistry. B 124 (31) (2020)
Helena Damtoft Tjørnelund, Jesper J Madsen, Günther Herbert Johannes Peters
Water-Intake and Water-Molecule Paths to the Active Site of Secretory Phospholipase A2 Studied Using MD Simulations and the Tracking Tool AQUA-DUCT. The journal of physical chemistry. B 124 (10) (2020)
Hanne S Antila, Pavel Buslaev, Fernando Favela-Rosales, Tiago M Ferreira, Ivan Yu Gushchin, Matti Javanainen, Batuhan Kav, Jesper J Madsen, Josef Melcr, Markus S Miettinen, Jukka Määttä, Ricky Nencini, O H Samuli Ollila, Thomas J Piggot
Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The journal of physical chemistry. B 123 (43) (2019)
Jesper J Madsen, E Persson, O H Olsen
Evolutionary conservation of the allosteric activation of factor VIIa by tissue factor in lamprey: comment. Journal of thrombosis and haemostasis : JTH 16 (7) (2018)
Jesper J Madsen, Anton V Sinitskiy, Jianing Li, Gregory A Voth
Highly Coarse-Grained Representations of Transmembrane Proteins. Journal of chemical theory and computation 13 (2) (2017)
Pernille Sønderby, Åsmund Rinnan, Jesper J Madsen, Pernille Harris, Jens T Bukrinski, Günther Herbert Johannes Peters
Small-Angle X-ray Scattering Data in Combination with RosettaDock Improves the Docking Energy Landscape. Journal of chemical information and modeling 57 (10) (2017)

Jesper J Madsen.css-eqlu8i{font-size:small;padding-left:4px;} (J J Madsen)

Publication Activity (10 Years)

Top Topics

Top Venues

Jesper J Madsen (J J Madsen)