Matti Javanainen (M Javanainen)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 46

Top Venues

The journal of physical chemistry letters

Environmental science & technology

Journal of chemical theory and computation

The journal of physical chemistry. B

Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences

Tampere University of Technology (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences

Czechia

Postdoctoral Fellow

Tampere University of Technology

Finland

PhD student, Researcher

Education History

Tampere University of Technology

Finland

PHD :: Faculty of Natural Sciences

Tampereen Teknillinen yliopisto Apr 01 2010 - Jun 01 2012

Finland

MSC :: Department of Physics

Tampereen Teknillinen yliopisto Aug 01 2006 - Apr 01 2010

Finland

BSC :: Department of Physics

Publications

Balázs Fábián, Matti Javanainen
Energetics of the Transmembrane Peptide Sorting by Hydrophobic Mismatch. The journal of physical chemistry letters (2024)
Balázs Fábián, Matti Javanainen
Energetics of the Transmembrane Peptide Sorting by Hydrophobic Mismatch. The journal of physical chemistry letters 15 (20) (2024)
Balázs Fábián, Matti Javanainen
Diffusion Analyses along Mean and Gaussian-Curved Membranes with CurD. The journal of physical chemistry letters (2024)
Federica Scollo, Carmelo Tempra, Hüseyin Evci, Miguel Riopedre-Fernandez, Agnieszka Olżyńska, Matti Javanainen, Arunima Uday, Marek Cebecauer, Lukasz Cwiklik, Hector Martinez-Seara, Pavel Jungwirth, Piotr Jurkiewicz, Martin Hof
Can calmodulin bind to lipids of the cytosolic leaflet of plasma membranes? Open biology 14 (9) (2024)
Balázs Fábián, Matti Javanainen
Energetics of the Transmembrane Peptide Sorting by Hydrophobic Mismatch. The journal of physical chemistry letters 15 (20) (2024)
Alexia Martin, Carmelo Tempra, Yuefan Yu, Juho Liekkinen, Roma Thakker, Hayoung Lee, Berta de Santos Moreno, Ilpo Vattulainen, Christos Rossios, Matti Javanainen, Jorge Bernardino de La Serna
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function. Environmental science & technology (2024)
Alexia Martin, Carmelo Tempra, Yuefan Yu, Juho Liekkinen, Roma Thakker, Hayoung Lee, Berta de Santos Moreno, Ilpo Vattulainen, Christos Rossios, Matti Javanainen, Jorge Bernardino de La Serna
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function. Environmental science & technology 58 (3) (2024)
Ricky Nencini, Carmelo Tempra, Denys Biriukov, Miguel Riopedre-Fernandez, Victor Cruces Chamorro, Jakub Polák, Philip E Mason, Daniel Ondo, Jan Heyda, O H Samuli Ollila, Pavel Jungwirth, Matti Javanainen, Hector Martinez-Seara
Effective Inclusion of Electronic Polarization Improves the Description of Electrostatic Interactions: The prosECCo75 Biomolecular Force Field. Journal of chemical theory and computation (2024)
Alexia Martin, Carmelo Tempra, Yuefan Yu, Juho Liekkinen, Roma Thakker, Hayoung Lee, Berta de Santos Moreno, Ilpo Vattulainen, Christos Rossios, Matti Javanainen, Jorge Bernardino de La Serna
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function. Environmental science & technology 58 (3) (2024)
Balázs Fábián, Matti Javanainen
Diffusion Analyses along Mean and Gaussian-Curved Membranes with CurD. The journal of physical chemistry letters 15 (11) (2024)
Alexia Martin, Carmelo Tempra, Yuefan Yu, Juho Liekkinen, Roma Thakker, Hayoung Lee, Berta de Santos Moreno, Ilpo Vattulainen, Christos Rossios, Matti Javanainen, Jorge Bernardino de La Serna
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function. Environmental science & technology 58 (3) (2024)
Balázs Fábián, Matti Javanainen
Energetics of the Transmembrane Peptide Sorting by Hydrophobic Mismatch. The journal of physical chemistry letters 15 (20) (2024)
Alexia Martin, Carmelo Tempra, Yuefan Yu, Juho Liekkinen, Roma Thakker, Hayoung Lee, Berta de Santos Moreno, Ilpo Vattulainen, Christos Rossios, Matti Javanainen, Jorge Bernardino de La Serna
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function. Environmental science & technology 58 (3) (2024)
Alexia Martin, Carmelo Tempra, Yuefan Yu, Juho Liekkinen, Roma Thakker, Hayoung Lee, Berta de Santos Moreno, Ilpo Vattulainen, Christos Rossios, Matti Javanainen, Jorge Bernardino de La Serna
Exposure to Aldehyde Cherry e-Liquid Flavoring and Its Vaping Byproduct Disrupt Pulmonary Surfactant Biophysical Function. Environmental science & technology 58 (3) (2024)
Denys Biriukov, Matti Javanainen
Efficient Simulations of Solvent Asymmetry Across Lipid Membranes Using Flat-Bottom Restraints. Journal of chemical theory and computation (2023)
Balázs Fábián, Ilpo Vattulainen, Matti Javanainen
Protein Crowding and Cholesterol Increase Cell Membrane Viscosity in a Temperature Dependent Manner. Journal of chemical theory and computation (2023)
Juho Liekkinen, Agnieszka Olżyńska, Lukasz Cwiklik, Jorge Bernardino de La Serna, Ilpo Vattulainen, Matti Javanainen
Surfactant Proteins SP-B and SP-C in Pulmonary Surfactant Monolayers: Physical Properties Controlled by Specific Protein-Lipid Interactions. Langmuir : the ACS journal of surfaces and colloids (2023)
Shahid Rehan, Dale Tranter, Phillip P Sharp, Gregory B Craven, Eric Lowe, Janet L Anderl, Tony Muchamuel, Vahid Abrishami, Suvi Kuivanen, Nicole A Wenzell, Andy Jennings, Chakrapani Kalyanaraman, Tomas Strandin, Matti Javanainen, Olli Vapalahti, Matthew P Jacobson, Dustin McMinn, Christopher J Kirk, Juha T Huiskonen, Jack Taunton, Ville O Paavilainen
Signal peptide mimicry primes Sec61 for client-selective inhibition. Nature chemical biology (2023)
Sudeep Karki, Matti Javanainen, Shahid Rehan, Dale Tranter, Juho Kellosalo, Juha T Huiskonen, Lotta J Happonen, Ville O Paavilainen
Molecular view of ER membrane remodeling by the Sec61/TRAP translocon. EMBO reports (2023)
Larisa Chernyaeva, Giorgio Ratti, Laura Teirilä, Satoshi Fudo, Uni Rankka, Anssi Pelkonen, Paula Korhonen, Katarzyna Leskinen, Salla Keskitalo, Kari Salokas, Christina Gkolfinopoulou, Katrina E Crompton, Matti Javanainen, Lotta J Happonen, Markku Varjosalo, Tarja Malm, Ville Leinonen, Angeliki Chroni, Päivi Saavalainen, Seppo Meri, Tommi Kajander, Adam J M Wollman, Eija Nissilä, Karita Haapasalo
Reduced binding of apoE4 to complement factor H promotes amyloid-β oligomerization and neuroinflammation. EMBO reports (2023)
Matti Javanainen, Peter Heftberger, Jesper J Madsen, Markus S Miettinen, Georg Pabst, O H Samuli Ollila
Quantitative Comparison against Experiments Reveals Imperfections in Force Fields' Descriptions of POPC-Cholesterol Interactions. Journal of chemical theory and computation (2023)
Man Thi Hong Nguyen, Denys Biriukov, Carmelo Tempra, Katarina Baxova, Hector Martinez-Seara, Hüseyin Evci, Vandana Singh, Radek Šachl, Martin Hof, Pavel Jungwirth, Matti Javanainen, Mario Vazdar
Ionic Strength and Solution Composition Dictate the Adsorption of Cell-Penetrating Peptides onto Phosphatidylcholine Membranes. Langmuir : the ACS journal of surfaces and colloids 38 (37) (2022)
Carmelo Tempra, O H Samuli Ollila, Matti Javanainen
Accurate Simulations of Lipid Monolayers Require a Water Model with Correct Surface Tension. Journal of chemical theory and computation 18 (3) (2022)
Itay Schachter, Riku O Paananen, Balázs Fábián, Piotr Jurkiewicz, Matti Javanainen
The Two Faces of the Liquid Ordered Phase. The journal of physical chemistry letters 13 (5) (2022)
Amélie Bacle, Pavel Buslaev, Rebeca Garcia-Fandino, Fernando Favela-Rosales, Tiago Mendes Ferreira, Patrick F J Fuchs, Ivan Yu Gushchin, Matti Javanainen, Anne M Kiirikki, Jesper J Madsen, Josef Melcr, Paula Milán Rodríguez, Markus S Miettinen, O H Samuli Ollila, Chris G Papadopoulos, Antonio Peón, Thomas J Piggot, Ángel Piñeiro, Salla I Virtanen
Inverse Conformational Selection in Lipid-Protein Binding. Journal of the American Chemical Society 143 (34) (2021)
Paulo Cesar Telles de Souza, Riccardo Alessandri, Jonathan Barnoud, Sebastian Thallmair, Ignacio Faustino, Fabian Grünewald, Ilias Patmanidis, Haleh Abdizadeh, Bart Marlon Herwig Bruininks, Tsjerk A Wassenaar, Peter C Kroon, Josef Melcr, Vincent Nieto, Valentina Corradi, Hanif M Khan, Jan Domański, Matti Javanainen, Hector Martinez-Seara, Nathalie Reuter, Robert B Best, Ilpo Vattulainen, Luca Monticelli, Xavier Periole, D Peter Tieleman, Alex H de Vries, Siewert J Marrink
Martini 3: a general purpose force field for coarse-grained molecular dynamics. Nature methods 18 (4) (2021)
Elise Duboué-Dijon, Matti Javanainen, Pauline Delcroix, Pavel Jungwirth, Hector Martinez-Seara
A practical guide to biologically relevant molecular simulations with charge scaling for electronic polarization. The Journal of chemical physics 153 (5) (2021)
Matti Javanainen, Hector Martinez-Seara, Christopher V Kelly, Pavel Jungwirth, Balázs Fábián
Anisotropic diffusion of membrane proteins at experimental timescales. The Journal of chemical physics 155 (1) (2021)
Sebastian Thallmair, Matti Javanainen, Balázs Fábián, Hector Martinez-Seara, Siewert-Jan Marrink
Nonconverged Constraints Cause Artificial Temperature Gradients in Lipid Bilayer Simulations. The journal of physical chemistry. B 125 (33) (2021)
Estefanía Lucendo, Mónica Sancho, Fabio Lolicato, Matti Javanainen, Waldemar Kulig, Diego Leiva, Gerard Duart, Vicente Andreu-Fernández, Ismael Mingarro, Mar Orzáez
Mcl-1 and Bok transmembrane domains: Unexpected players in the modulation of apoptosis. Proceedings of the National Academy of Sciences of the United States of America 117 (45) (2020)
Matti Javanainen, Ilpo Vattulainen, Luca Monticelli
Correction to "On Atomistic Models for Molecular Oxygen". The journal of physical chemistry. B 124 (31) (2020)
Matti Javanainen, Wei Hua, Ondrej Tichacek, Pauline Delcroix, Lukasz Cwiklik, Heather C Allen
Structural Effects of Cation Binding to DPPC Monolayers. Langmuir : the ACS journal of surfaces and colloids 36 (50) (2020)
Matti Javanainen, O H Samuli Ollila, Hector Martinez-Seara
Rotational Diffusion of Membrane Proteins in Crowded Membranes. The journal of physical chemistry. B 124 (15) (2020)
Andrey A Gurtovenko, Matti Javanainen, Fabio Lolicato, Ilpo Vattulainen
The Devil Is in the Details: What Do We Really Track in Single-Particle Tracking Experiments of Diffusion in Biological Membranes? The journal of physical chemistry letters 10 (5) (2019)
Riku O Paananen, Matti Javanainen, Juha M Holopainen, Ilpo Vattulainen
Crystalline Wax Esters Regulate the Evaporation Resistance of Tear Film Lipid Layers Associated with Dry Eye Syndrome. The journal of physical chemistry letters 10 (14) (2019)
Matti Javanainen, Giray Enkavi, Ramon Guixà-Gonzaléz, Waldemar Kulig, Hector Martinez-Seara, Ilya Levental, Ilpo Vattulainen
Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions. PLoS computational biology 15 (5) (2019)
Giray Enkavi, Matti Javanainen, Waldemar Kulig, Tomasz Róg, Ilpo Vattulainen
Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance. Chemical reviews 119 (9) (2019)
Hanne S Antila, Pavel Buslaev, Fernando Favela-Rosales, Tiago M Ferreira, Ivan Yu Gushchin, Matti Javanainen, Batuhan Kav, Jesper J Madsen, Josef Melcr, Markus S Miettinen, Jukka Määttä, Ricky Nencini, O H Samuli Ollila, Thomas J Piggot
Headgroup Structure and Cation Binding in Phosphatidylserine Lipid Bilayers. The journal of physical chemistry. B 123 (43) (2019)
Hugo A L Filipe, Matti Javanainen, Armindo Salvador, Adelino M Galvão, Ilpo Vattulainen, Luís M S Loura, Maria João Moreno
Quantitative Assessment of Methods Used To Obtain Rate Constants from Molecular Dynamics Simulations-Translocation of Cholesterol across Lipid Bilayers. Journal of chemical theory and computation 14 (7) (2018)
Matti Javanainen, Adéla Melcrová, Aniket Magarkar, Piotr Jurkiewicz, Martin Hof, Pavel Jungwirth, Hector Martinez-Seara
Two cations, two mechanisms: interactions of sodium and calcium with zwitterionic lipid membranes. Chemical communications (Cambridge, England) 53 (39) (2018)
Christoph Allolio, Aniket Magarkar, Piotr Jurkiewicz, Katarína Baxová, Matti Javanainen, Philip E Mason, Radek Šachl, Marek Cebecauer, Martin Hof, Dominik Horinek, Veronika Heinz, Reinhard Rachel, Christine M Ziegler, Adam Schröfel, Pavel Jungwirth
Arginine-rich cell-penetrating peptides induce membrane multilamellarity and subsequently enter via formation of a fusion pore. Proceedings of the National Academy of Sciences of the United States of America 115 (47) (2018)
Matti Javanainen, Hector Martinez-Seara, Ilpo Vattulainen
Nanoscale Membrane Domain Formation Driven by Cholesterol. Scientific reports 7 (1) (2017)
Matti Javanainen, Hector Martinez-Seara, Ralf Metzler, Ilpo Vattulainen
Diffusion of Integral Membrane Proteins in Protein-Rich Membranes. The journal of physical chemistry letters 8 (17) (2017)
Matti Javanainen, Antti Lamberg, Lukasz Cwiklik, Ilpo Vattulainen, O H Samuli Ollila
Atomistic Model for Nearly Quantitative Simulations of Langmuir Monolayers. Langmuir : the ACS journal of surfaces and colloids 34 (7) (2017)
Matti Javanainen, Ilpo Vattulainen, Luca Monticelli
On Atomistic Models for Molecular Oxygen. The journal of physical chemistry. B 121 (3) (2017)
Moutusi Manna, Miia Niemelä, Joona Tynkkynen, Matti Javanainen, Waldemar Kulig, Daniel J Müller, Tomasz Rog, Ilpo Vattulainen
Mechanism of allosteric regulation of β2-adrenergic receptor by cholesterol. eLife 5 (2016)

Matti Javanainen.css-eqlu8i{font-size:small;padding-left:4px;} (M Javanainen)

Publication Activity (10 Years)

Top Topics

Top Venues

Matti Javanainen (M Javanainen)