Olga Vitek

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 17

Top Topics

Mass Spectrometry

Quality Control

Top Venues

Journal of proteome research

bioRxiv : the preprint server for biology

Nature protocols

This page only lists publications with an associated author ORCID identifier.

Publications

Benjamin M Gyori, Olga Vitek
Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge. Nature methods 21 (8) (2024)
Devon Kohler, Mateusz Staniak, Fengchao Yu, Alexey I Nesvizhskii, Olga Vitek
An MSstats workflow for detecting differentially abundant proteins in large-scale data-independent acquisition mass spectrometry experiments with FragPipe processing. Nature protocols (2024)
Benjamin M Gyori, Olga Vitek
Beyond protein lists: AI-assisted interpretation of proteomic investigations in the context of evolving scientific knowledge. Nature methods 21 (8) (2024)
Devon Kohler, Maanasa Kaza, Cristina Pasi, Ting Huang, Mateusz Staniak, Dhaval Mohandas, Eduard Sabidó, Meena Choi, Olga Vitek
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments. Journal of proteome research 22 (2) (2023)
Devon Kohler, Maanasa Kaza, Cristina Pasi, Ting Huang, Mateusz Staniak, Dhaval Mohandas, Eduard Sabidó, Meena Choi, Olga Vitek
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments. Journal of proteome research 22 (2) (2023)
Ting Huang, Mateusz Staniak, Felipe da Veiga Leprevost, Amanda M Figueroa-Navedo, Alexander R Ivanov, Alexey I Nesvizhskii, Meena Choi, Olga Vitek
Statistical Detection of Differentially Abundant Proteins in Experiments with Repeated Measures Designs and Isobaric Labeling. Journal of proteome research (2023)
Kylie Ariel Bemis, Melanie Christine Föll, Dan Guo, Sai Srikanth Lakkimsetty, Olga Vitek
Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis. bioRxiv : the preprint server for biology (2023)
Marija Buljan, Amir Banaei-Esfahani, Peter Blattmann, Fabienne Meier-Abt, Wenguang Shao, Olga Vitek, Hua Tang, Ruedi Aebersold
A computational framework for the inference of protein complex remodeling from whole-proteome measurements. Nature methods (2023)
Kylie Ariel Bemis, Melanie Christine Föll, Dan Guo, Sai Srikanth Lakkimsetty, Olga Vitek
Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis. bioRxiv : the preprint server for biology (2023)
Kylie Ariel Bemis, Melanie Christine Föll, Dan Guo, Sai Srikanth Lakkimsetty, Olga Vitek
Cardinal v3 - a versatile open source software for mass spectrometry imaging analysis. bioRxiv : the preprint server for biology (2023)
Devon Kohler, Maanasa Kaza, Cristina Pasi, Ting Huang, Mateusz Staniak, Dhaval Mohandas, Eduard Sabidó, Meena Choi, Olga Vitek
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments. Journal of proteome research 22 (2) (2023)
Devon Kohler, Maanasa Kaza, Cristina Pasi, Ting Huang, Mateusz Staniak, Dhaval Mohandas, Eduard Sabidó, Meena Choi, Olga Vitek
MSstatsShiny: A GUI for Versatile, Scalable, and Reproducible Statistical Analyses of Quantitative Proteomic Experiments. Journal of proteome research (2023)
Kylie Ariel Bemis, Melanie Christine Föll, Dan Guo, Sai Srikanth Lakkimsetty, Olga Vitek
Cardinal v.3: a versatile open-source software for mass spectrometry imaging analysis. Nature methods (2023)
Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin S Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga Vitek
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Nature methods 17 (10) (2020)
Eralp Dogu, Sara Mohammad Taheri, Roger Olivella, Florian Marty, Ian Lienert, Lukas Reiter, Eduard Sabido, Olga Vitek
MSstatsQC 2.0: R/Bioconductor Package for Statistical Quality Control of Mass Spectrometry-Based Proteomics Experiments. Journal of proteome research 18 (2) (2018)
Meena Choi, Zeynep F Eren-Dogu, Christopher Colangelo, John Cottrell, Michael R Hoopmann, Eugene A Kapp, Sangtae Kim, Henry Lam, Thomas A Neubert, Magnus Palmblad, Brett S Phinney, Susan T Weintraub, Brendan MacLean, Olga Vitek
ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments. Journal of proteome research 16 (2) (2017)
Camille Terfve, Eduard Sabidó, Yibo Wu, Emanuel Gonçalves, Meena Choi, Stefania Vaga, Olga Vitek, Julio Saez-Rodriguez, Ruedi Aebersold
System-Wide Quantitative Proteomics of the Metabolic Syndrome in Mice: Genotypic and Dietary Effects. Journal of proteome research 16 (2) (2017)