Yasset Perez Riverol (Yasset Perez-Riverol)

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 69

Top Venues

Journal of proteome research

Nature methods

Expert review of proteomics

Scientific data

European Bioinformatics Institute

University of Havana (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

European Bioinformatics Institute Jan 01 2019

United Kingdom

Team Coordinator :: Proteomics Services

European Bioinformatics Institute Mar 19 2016

United Kingdom

Senior Software Engineer :: Proteomics Services

European Bioinformatics Institute Mar 19 2014 - Mar 19 2016

United Kingdom

Bioinformatician/Software Developer :: Proteomics Services

Centre for Genetic Enginnering and Biotechnology Oct 03 2006 - Mar 17 2014

Cuba

Researcher :: Proteomics Department

European Bioinformatics Institute

United Kingdom

Research Visitor :: Proteomics Services

Education History

University of Havana

Cuba

PHD :: Biochemistry, Biology Faculty

Polytechnic Institute (ISPJAE) of Havana Jun 22 2001

Cuba

BSC :: Software Engineering

Publications

Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
Henry E Webel, Yasset Perez Riverol, Annelaura Bach Nielsen, Simon Rasmussen
Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific data 11 (1) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods 21 (3) (2024)
Jingwen Bai, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Chakradhar Bandla, Juan Antonio Vizcaino, Yasset Perez Riverol
Open-source large language models in action: A bioinformatics chatbot for PRIDE database. Proteomics (2024)
Chengxin Dai, Julianus Pfeuffer, Hong Wang, Ping Zheng, Lukas Käll, Timo Sachsenberg, Vadim Demichev, Mingze Bai, Oliver Kohlbacher, Yasset Perez Riverol
quantms: a cloud-based pipeline for quantitative proteomics enables the reanalysis of public proteomics data. Nature methods (2024)
Henry E Webel, Yasset Perez Riverol, Annelaura Bach Nielsen, Simon Rasmussen
Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific data 11 (1) (2024)
Julianus Pfeuffer, Chris Bielow, Samuel Wein, Kyowon Jeong, Eugen Netz, Axel Walter, Oliver Alka, Lars Nilse, Pasquale Domenico Colaianni, Douglas McCloskey, Jihyung Kim, George A Rosenberger, Leon Bichmann, Mathias Walzer, Johannes Veit, Bertrand Boudaud, Matthias Bernt, Nikolaos Patikas, Matteo Pilz, Michał Piotr Startek, Svetlana Kutuzova, Lukas Heumos, Joshua Charkow, Justin Cyril Sing, Ayesha Feroz, Arslan Siraj, Hendrik Weisser, Tjeerd Maarten Hein Dijkstra, Yasset Perez Riverol, Hannes L Röst, Oliver Kohlbacher, Timo Sachsenberg
OpenMS 3 enables reproducible analysis of large-scale mass spectrometry data. Nature methods (2024)
Henry E Webel, Yasset Perez Riverol, Annelaura Bach Nielsen, Simon Rasmussen
Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific data 11 (1) (2024)
Henry E Webel, Yasset Perez Riverol, Annelaura Bach Nielsen, Simon Rasmussen
Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific data 11 (1) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Zhi Sun, Deepti J Kundu, Emily Bowler-Barnett, Maria Martin, Jun Fan, Dmytro Chebotarov, Kenneth L McNally, Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones
Meta-Analysis of Rice Phosphoproteomics Data to Understand Variation in Cell Signaling Across the Rice Pan-Genome. Journal of proteome research 23 (7) (2024)
Henry E Webel, Yasset Perez Riverol, Annelaura Bach Nielsen, Simon Rasmussen
Mass spectrometry-based proteomics data from thousands of HeLa control samples. Scientific data 11 (1) (2024)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Hong Wang, Chengxin Dai, Julianus Pfeuffer, Timo Sachsenberg, Aniel Sanchez, Mingze Bai, Yasset Perez Riverol
Tissue-based absolute quantification using large-scale TMT and LFQ experiments. Proteomics (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Matthew Thakur, Annalisa Buniello, Catherine Brooksbank, Kim T Gurwitz, Matthew Hall, Matthew Hartley, David G Hulcoop, Andrew R Leach, Diana Marques, Maria Martin, Aziz Mithani, Ellen M McDonagh, Euphemia Mutasa-Gottgens, David Ochoa, Yasset Perez Riverol, James David Stephenson, Mihaly Varadi, Sameer Velankar, Juan Antonio Vizcaino, Rick Witham, Johanna McEntyre
EMBL's European Bioinformatics Institute (EMBL-EBI) in 2023. Nucleic acids research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Mingze Bai, Jingwen Deng, Chengxin Dai, Julianus Pfeuffer, Timo Sachsenberg, Yasset Perez Riverol
LFQ-Based Peptide and Protein Intensity Differential Expression Analysis. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tine Claeys, Tim Van Den Bossche, Yasset Perez Riverol, Kris Gevaert, Juan Antonio Vizcaino, Lennart Martens
lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation. Nature communications 14 (1) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Tobias Greisager Rehfeldt, Ralf Gabriels, Robbin Bouwmeester, Siegfried Gessulat, Benjamin A Neely, Magnus Palmblad, Yasset Perez Riverol, Tobias K Schmidt, Juan Antonio Vizcaino, Eric W Deutsch
ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics. Journal of proteome research 22 (2) (2023)
Eric W Deutsch, Juan Antonio Vizcaino, Andrew R Jones, Pierre-Alain Binz, Henry H N Lam, Joshua Klein, Wout Bittremieux, Yasset Perez Riverol, David L Tabb, Mathias Walzer, Sylvie Ricard-Blum, Henning Hermjakob, Steffen Neumann, Tytus D Mak, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Nuno Bandeira, Jeremy J Carver, Benjamin S Pullman, Zhi Sun, Nils Hoffmann, Jim Shofstahl, Yunping Zhu, Luana Licata, Federica Quaglia, Silvio C E Tosatto, Sandra E Orchard
Proteomics Standards Initiative at Twenty Years: Current Activities and Future Work. Journal of proteome research 22 (2) (2023)
Kerry A Ramsbottom, Ananth Prakash, Yasset Perez Riverol, Oscar Martin Camacho, Maria-Jesus Martin, Juan Antonio Vizcaino, Eric W Deutsch, Andrew R Jones
Method for Independent Estimation of the False Localization Rate for Phosphoproteomics. Journal of proteome research 21 (7) (2022)
Eric W Deutsch, Nuno Bandeira, Yasset Perez Riverol, Vagisha Sharma, Jeremy J Carver, Luis Mendoza, Deepti J Kundu, Shengbo Wang, Chakradhar Bandla, Selvakumar Kamatchinathan, Suresh Hewapathirana, Benjamin S Pullman, Julie Wertz, Zhi Sun, Shin Kawano, Shujiro Okuda, Yu Watanabe, Brendan MacLean, Michael J MacCoss, Yunping Zhu, Yasushi Ishihama, Juan Antonio Vizcaino
The ProteomeXchange consortium at 10 years: 2023 update. Nucleic acids research (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics (2022)
Bart Van Puyvelde, Simon Daled, Sander Willems, Ralf Gabriels, Anne Gonzalez de Peredo, Karima Chaoui, Emmanuelle Mouton-Barbosa, David Bouyssié, Kurt Boonen, Christopher J Hughes, Lee A Gethings, Yasset Perez Riverol, Nic Bloomfield, Stephen Tate, Odile Schiltz, Lennart Martens, Dieter Deforce, Maarten Dhaenens
A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics. Scientific data 9 (1) (2022)
Xiyang Luo, Wout Bittremieux, Johannes Griss, Eric W Deutsch, Timo Sachsenberg, Lev I Levitsky, Mikhail V Gorshkov, Julia A Bubis, Ralf Gabriels, Henry Webel, Aniel Sanchez, Mingze Bai, Lukas Käll, Yasset Perez Riverol
A Comprehensive Evaluation of Consensus Spectrum Generation Methods in Proteomics. Journal of proteome research 21 (6) (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics 19 (7-12) (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics 19 (7-12) (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics 19 (7-12) (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics (2022)
Richard D LeDuc, Eric W Deutsch, Pierre-Alain Binz, Ryan T Fellers, Anthony J Cesnik, Joshua A Klein, Tim Van Den Bossche, Ralf Gabriels, Arshika Yalavarthi, Yasset Perez Riverol, Jeremy Carver, Wout Bittremieux, Shin Kawano, Benjamin Pullman, Nuno Bandeira, Michael P Snyder, Paul M Thomas, Juan Antonio Vizcaino
Proteomics Standards Initiative's ProForma 2.0: Unifying the Encoding of Proteoforms and Peptidoforms. Journal of proteome research 21 (4) (2022)
Yasset Perez Riverol
Proteomic repository data submission, dissemination, and reuse: key messages. Expert review of proteomics 19 (7-12) (2022)
Pavel Sinitcyn, Hamid Hamzeiy, Favio Salinas Soto, Daniel Itzhak, Frank McCarthy, Christoph Wichmann, Martin Steger, Uli Ohmayer, Ute Distler, Stephanie Kaspar-Schoenefeld, Nikita Prianichnikov, Şule Yılmaz, Jan Daniel Rudolph, Stefan Tenzer, Yasset Perez Riverol, Nagarjuna Nagaraj, Sean J Humphrey, Juergen Cox
MaxDIA enables library-based and library-free data-independent acquisition proteomics. Nature biotechnology (2021)
Yasset Perez Riverol, Jingwen Bai, Chakradhar Bandla, David García-Seisdedos, Suresh Hewapathirana, Selvakumar Kamatchinathan, Deepti J Kundu, Ananth Prakash, Anika Frericks-Zipper, Martin Eisenacher, Mathias Walzer, Shengbo Wang, Alvis Brazma, Juan Antonio Vizcaino
The PRIDE database resources in 2022: a hub for mass spectrometry-based proteomics evidences. Nucleic acids research (2021)
Pablo Moreno, Ni Huang, Jonathan R Manning, Suhaib Mohammed, Andrey Solovyev, Krzysztof Polański, Wendi Bacon, Ruben Chazarra, Carlos Talavera-López, Maria A Doyle, Guilhem Marnier, Bjoern Andreas Gruening, Helena Rasche, Nancy George, Silvie Korena Fexova, Mohamed Alibi, Zhichiao Miao, Yasset Perez Riverol, Maximilian Haeussler, Alvis Brazma, Sarah A Teichmann, Kerstin B Meyer, Irene Papatheodorou
User-friendly, scalable tools and workflows for single-cell RNA-seq analysis. Nature methods 18 (4) (2021)
Eric W Deutsch, Yasset Perez Riverol, Jeremy Carver, Shin-Ichiro Kawano, Luis Mendoza, Tim Van Den Bossche, Ralf Gabriels, Pierre-Alain Binz, Benjamin Pullman, Zhi Sun, Jim Shofstahl, Wout Bittremieux, Tytus D Mak, Joshua Klein, Yunping Zhu, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira
Universal Spectrum Identifier for mass spectra. Nature methods 18 (7) (2021)
Andrew F Jarnuczak, Hanna Najgebauer, Mitra Parissa Barzine, Deepti J Kundu, Fatemeh Ghavidel, Yasset Perez Riverol, Irene Papatheodorou, Alvis Brazma, Juan Antonio Vizcaino
An integrated landscape of protein expression in human cancer. Scientific data 8 (1) (2021)
Enrique Audain, Anna Wilsdon, Jeroen Breckpot, Jose M G Izarzugaza, Tomas W Fitzgerald, Anne-Karin Kahlert, Alejandro Sifrim, Florian Wünnemann, Yasset Perez Riverol, Hashim Abdul-Khaliq, Mads Bak, Anne Susan Bassett, D Woodrow Benson, Felix Berger, Ingo Daehnert, Koenraad Devriendt, Sven Dittrich, Piers E F Daubeney, Vidu Garg, Karl Hackmann, Kirstin Hoff, Philipp Hofmann, Gregor Dombrowsky, Thomas Pickardt, Ulrike Bauer, Bernard D Keavney, Sabine Klaassen, Hans-Heiner Kramer, Christian R Marshall, Dianna M Milewicz, Scott Lemaire, Joseph S Coselli, Michael E Mitchell, Aoy Tomita-Mitchell, Siddharth K Prakash, Karl D Stamm, Alexandre F R Stewart, Candice K Silversides, Reiner Siebert, Brigitte Stiller, Jill Anne Rosenfeld, Inga Vater, Alex V Postma, Almuth Caliebe, J David Brook, Gregor U Andelfinger, Matthew E Hurles, Bernard Thienpont, Lars Allan Larsen, Marc-Phillip Hitz
Integrative analysis of genomic variants reveals new associations of candidate haploinsufficient genes with congenital heart disease. PLoS genetics 17 (7) (2021)
Jingwen Bai, Chakradhar Bandla, Jiaxin Guo, Roberto Vera Alvarez, Mingze Bai, Juan Antonio Vizcaino, Pablo Moreno, Bjoern Andreas Gruening, Olivier Sallou, Yasset Perez Riverol
BioContainers Registry: Searching Bioinformatics and Proteomics Tools, Packages, and Containers. Journal of proteome research 20 (4) (2021)
Tobias K Schmidt, Patroklos Samaras, Viktoria Dorfer, Christian Panse, Tobias Kockmann, Leon Bichmann, Bart van Puyvelde, Yasset Perez Riverol, Eric W Deutsch, Bernhard Kuster, Mathias Wilhelm
Universal Spectrum Explorer: A Standalone (Web-)Application for Cross-Resource Spectrum Comparison. Journal of proteome research 20 (6) (2021)
Natália Almeida, Jimmy Rodriguez, Indira Pla Parada, Yasset Perez Riverol, Nicole Woldmar, Yonghyo Kim, Henriett Oskolas, Lazaro Betancourt, Jeovanis Gil Valdés, K Barbara Sahlin, Luciana Pizzatti, A Marcell Szasz, Sarolta Kárpáti, Roger Appelqvist, Johan Malm, Gilberto B Domont, Fábio C S Nogueira, György Marko-Varga, Aniel Sanchez
Mapping the Melanoma Plasma Proteome (MPP) Using Single-Shot Proteomics Interfaced with the WiMT Database. Cancers 13 (24) (2021)
Chengxin Dai, Anja Füllgrabe, Julianus Pfeuffer, Elizaveta M Solovyeva, Jingwen Deng, Pablo Moreno, Selvakumar Kamatchinathan, Deepti Jaiswal Kundu, Nancy George, Silvie Fexova, Bjoern Andreas Gruening, Melanie Christine Föll, Johannes Griss, Marc Vaudel, Enrique Audain, Marie Locard-Paulet, Michael Turewicz, Martin Eisenacher, Julian Uszkoreit, Tim Van Den Bossche, Veit Schwämmle, Henry Webel, Stefan Schulze, David Bouyssié, Savita Jayaram, Vinay Kumar Duggineni, Patroklos Samaras, Mathias Wilhelm, Meena Choi, Mingxun Wang, Oliver Kohlbacher, Alvis Brazma, Irene Papatheodorou, Nuno Bandeira, Eric W Deutsch, Juan Antonio Vizcaino, Mingze Bai, Timo Sachsenberg, Lev I Levitsky, Yasset Perez Riverol
A proteomics sample metadata representation for multiomics integration and big data analysis. Nature communications 12 (1) (2021)
Wout Bittremieux, David Bouyssié, Viktoria Dorfer, Marie Locard-Paulet, Yasset Perez Riverol, Veit Schwämmle, Julian Uszkoreit, Tim Van Den Bossche
The European Bioinformatics Community for Mass Spectrometry (EuBIC-MS): an open community for bioinformatics training and research. Rapid communications in mass spectrometry : RCM (2021)
Meena Choi, Jeremy Carver, Cristina Chiva, Manuel Tzouros, Ting Huang, Tsung-Heng Tsai, Benjamin S Pullman, Oliver M Bernhardt, Ruth Hüttenhain, Guo Ci Teo, Yasset Perez Riverol, Jan Muntel, Maik Müller, Sandra Goetze, Maria Pavlou, Erik Verschueren, Bernd Wollscheid, Alexey I Nesvizhskii, Lukas Reiter, Tom Dunkley, Eduard Sabidó, Nuno Bandeira, Olga Vitek
MassIVE.quant: a community resource of quantitative mass spectrometry-based proteomics datasets. Nature methods 17 (10) (2020)
Yasset Perez Riverol, null null
Toward a Sample Metadata Standard in Public Proteomics Repositories. Journal of proteome research 19 (10) (2020)
Yasset Perez Riverol, Pablo Moreno
Scalable Data Analysis in Proteomics and Metabolomics Using BioContainers and Workflows Engines. Proteomics 20 (9) (2019)
Niels Hulstaert, Jim Shofstahl, Timo Sachsenberg, Mathias Walzer, Harald Barsnes, Lennart Martens, Yasset Perez Riverol
ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion. Journal of proteome research 19 (1) (2019)
Yasset Perez Riverol, Andrey Zorin, Gaurhari Dass, Manh-Tu Vu, Pan Xu, Mihai Glont, Juan Antonio Vizcaino, Andrew F Jarnuczak, Robert Petryszak, Peipei Ping, Henning Hermjakob
Quantifying the impact of public omics data. Nature communications 10 (1) (2019)
Eric W Deutsch, Yasset Perez Riverol, Robert J Chalkley, Mathias Wilhelm, Stephen Tate, Timo Sachsenberg, Mathias Walzer, Lukas Käll, Bernard Delanghe, Sebastian Böcker, Emma L Schymanski, Paul Wilmes, Viktoria Dorfer, Bernhard Kuster, Pieter-Jan Volders, Nico Jehmlich, Johannes P C Vissers, Dennis W Wolan, Ana Y Wang, Luis Mendoza, Jim Shofstahl, Andrew W Dowsey, Johannes Griss, Reza M Salek, Steffen Neumann, Pierre-Alain Binz, Henry H N Lam, Juan Antonio Vizcaino, Nuno Bandeira, Hannes L Röst
Expanding the Use of Spectral Libraries in Proteomics. Journal of proteome research 17 (12) (2018)
Yasset Perez Riverol, Mingze Bai, Felipe da Veiga Leprevost, Silvano Squizzato, Young Mi Park, Kenneth Haug, Adam J Carroll, J Dylan Spalding, Justin Paschall, Mingxun Wang, Noemi Del-Toro, Tobias Ternent, Peng Zhang, Nicola Buso, Nuno Bandeira, Eric W Deutsch, David S Campbell, Ronald C Beavis, Reza M Salek, Siddhant Tripathi, Robert Petryszak, Maria Keays, Eoin Fahy, Manish Sud, Shankar Subramaniam, Ariana Barbera, Rafael C Jiménez, Alexey I Nesvizhskii, Susanna-Assunta Sansone, Christoph Steinbeck, Rodrigo Lopez, Juan Antonio Vizcaino, Peipei Ping, Henning Hermjakob
Discovering and linking public omics data sets using the Omics Discovery Index. Nature biotechnology 35 (5) (2018)
Bjoern Andreas Gruening, Olivier Sallou, Pablo Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes Röst, Timo Sachsenberg, Brian O'Connor, Fábio Madeira, Victoria Dominguez Del Angel, Michael R Crusoe, Susheel Varma, Daniel Blankenberg, Rafael C Jimenez, null null, Yasset Perez Riverol
Recommendations for the packaging and containerizing of bioinformatics software. F1000Research 7 (2018)
Matthew The, Fredrik Edfors, Yasset Perez Riverol, Samuel H Payne, Michael R Hoopmann, Magnus Palmblad, Björn Forsström, Lukas Käll
A Protein Standard That Emulates Homology for the Characterization of Protein Inference Algorithms. Journal of proteome research 17 (5) (2018)
Yasset Perez Riverol, Juan Antonio Vizcaino
Synthetic human proteomes for accelerating protein research. Nature methods 14 (3) (2018)
Bjoern Andreas Gruening, Olivier Sallou, Pablo Moreno, Felipe da Veiga Leprevost, Hervé Ménager, Dan Søndergaard, Hannes Röst, Timo Sachsenberg, Brian O'Connor, Fábio Madeira, Victoria Dominguez Del Angel, Michael R Crusoe, Susheel Varma, Daniel Blankenberg, Rafael C Jimenez, null null, Yasset Perez Riverol
Recommendations for the packaging and containerizing of bioinformatics software. F1000Research (2018)
Rafael C Jimenez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella, Neil Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla Garcia, Josep Ll Gelpí, Simon Gladman, Carole Goble, Montserrat González Ferreiro, Alejandra Gonzalez-Beltran, Philippa C Griffin, Bjoern Andreas Gruening, Jonas Hagberg, Petr Holub, Rob W W Hooft, Jon Ison, Daniel S Katz, Brane Leskošek, Federico López Gómez, Luis J Oliveira, David Mellor, Rowland Mosbergen, Nicola M Mulder, Yasset Perez Riverol, Robert Pergl, Horst Pichler, Bernard Pope, Ferran Sanz, Maria V Schneider, Victoria Stodden, Radosław Suchecki, Radka Svobodová Vařeková, Harry-Anton Talvik, Ilian Todorov, Andrew Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S Watson-Haigh, Steve Crouch
Four simple recommendations to encourage best practices in research software. F1000Research 6 (2017)

Yasset Perez Riverol.css-eqlu8i{font-size:small;padding-left:4px;} (Yasset Perez-Riverol)

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Yasset Perez Riverol (Yasset Perez-Riverol)