Patricia L Clark

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 20

Top Topics

Molecular Dynamics Simulations

Listeria Monocytogenes

High Resolution Mass Spectrometry

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Journal of proteome research

Protein science : a publication of the Protein Society

Science (New York, N.Y.)

This page only lists publications with an associated author ORCID identifier.

Publications

Anabel Rodriguez, Jacob D Diehl, Gabriel S Wright, Christopher D Bonar, Taylor J Lundgren, McKenze J Moss, Jun Li, Tijana Milenkovic, Paul W Huber, Matthew M Champion, Scott J Emrich, Patricia L Clark
Synonymous codon substitutions modulate transcription and translation of a divergent upstream gene by modulating antisense RNA production. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Taylor J Lundgren, Patricia L Clark, Matthew M Champion
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. Journal of proteome research 23 (4) (2024)
Anabel Rodriguez, Jacob D Diehl, Gabriel S Wright, Christopher D Bonar, Taylor J Lundgren, McKenze J Moss, Jun Li, Tijana Milenkovic, Paul W Huber, Matthew M Champion, Scott J Emrich, Patricia L Clark
Synonymous codon substitutions modulate transcription and translation of a divergent upstream gene by modulating antisense RNA production. Proceedings of the National Academy of Sciences of the United States of America 121 (36) (2024)
Taylor J Lundgren, Patricia L Clark, Matthew M Champion
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. Journal of proteome research (2024)
Taylor J Lundgren, Patricia L Clark, Matthew M Champion
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. Journal of proteome research 23 (4) (2024)
Michael C Baxa, Xiaoxuan Lin, Cedrick D Mukinay, Srinivas Chakravarthy, Joseph R Sachleben, Sarah Antilla, Nina Hartrampf, Joshua A Riback, Isabelle A Gagnon, Bradley L Pentelute, Patricia L Clark, Tobin R Sosnick
How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins. Protein science : a publication of the Protein Society 33 (5) (2024)
Michael C Baxa, Xiaoxuan Lin, Cedrick D Mukinay, Srinivas Chakravarthy, Joseph R Sachleben, Sarah Antilla, Nina Hartrampf, Joshua A Riback, Isabelle A Gagnon, Bradley L Pentelute, Patricia L Clark, Tobin R Sosnick
How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins. Protein science : a publication of the Protein Society 33 (5) (2024)
Taylor J Lundgren, Patricia L Clark, Matthew M Champion
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. Journal of proteome research 23 (4) (2024)
Taylor J Lundgren, Patricia L Clark, Matthew M Champion
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. Journal of proteome research 23 (4) (2024)
Taylor J Lundgren, Patricia L Clark, Matthew M Champion
Fit for Purpose Approach To Evaluate Detection of Amino Acid Substitutions in Shotgun Proteomics. Journal of proteome research 23 (4) (2024)
Gabriel Wright, Anabel Rodriguez, Jun Li, Tijana Milenkovic, Scott J Emrich, Patricia L Clark
CHARMING: Harmonizing synonymous codon usage to replicate a desired codon usage pattern. Protein science : a publication of the Protein Society (2021)
Robert W Harkness, Yuki Toyama, Zev A Ripstein, Huaying Zhao, Alexander I M Sever, Qing Luan, Jacob P Brady, Patricia L Clark, Peter W Schuck, Lewis E Kay
Competing stress-dependent oligomerization pathways regulate self-assembly of the periplasmic protease-chaperone DegP. Proceedings of the National Academy of Sciences of the United States of America 118 (32) (2021)
Ian M Walsh, Micayla A Bowman, Iker F Soto Santarriaga, Anabel Rodriguez, Patricia L Clark
Synonymous codon substitutions perturb cotranslational protein folding in vivo and impair cell fitness. Proceedings of the National Academy of Sciences of the United States of America 117 (7) (2020)
Micayla A Bowman, Joshua A Riback, Anabel Rodriguez, Hongyu Guo, Jun Li, Tobin R Sosnick, Patricia L Clark
Properties of protein unfolded states suggest broad selection for expanded conformational ensembles. Proceedings of the National Academy of Sciences of the United States of America 117 (38) (2020)
Joshua A Riback, Micayla A Bowman, Adam M Zmyslowski, Kevin William Plaxco, Patricia L Clark, Tobin R Sosnick
Commonly used FRET fluorophores promote collapse of an otherwise disordered protein. Proceedings of the National Academy of Sciences of the United States of America 116 (18) (2019)
Joshua A Riback, Micayla A Bowman, Adam M Zmyslowski, Catherine R Knoverek, John M Jumper, Emily B Kaye, Karl F Freed, Patricia L Clark, Tobin R Sosnick
Response to Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water". Science (New York, N.Y.) 361 (6405) (2018)
Joshua A Riback, Micayla A Bowman, Adam M Zmyslowski, Catherine R Knoverek, John M Jumper, James R Hinshaw, Emily B Kaye, Karl F Freed, Patricia L Clark, Tobin R Sosnick
Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water. Science (New York, N.Y.) 358 (6360) (2018)
Julie L Chaney, Aaron Steele, Rory Carmichael, Anabel Rodriguez, Alicia T Specht, Kim Ngo, Jun Li, Scott Emrich, Patricia L Clark
Widespread position-specific conservation of synonymous rare codons within coding sequences. PLoS computational biology 13 (5) (2017)
Anabel Rodriguez, Gabriel Wright, Scott Emrich, Patricia L Clark
%MinMax: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding. Protein science : a publication of the Protein Society 27 (1) (2017)
Esther Braselmann, Julie L Chaney, Matthew M Champion, Patricia L Clark
DegP Chaperone Suppresses Toxic Inner Membrane Translocation Intermediates. PloS one 11 (9) (2016)