Patrick Cahan

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 28

Top Topics

High Throughput

Top Venues

Development (Cambridge, England)

bioRxiv : the preprint server for biology

Scientific data

Genome medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) 151 (2) (2024)
Yu-Hao Cheng, Chun Hei Ryan Chan, Qin Bian, Randall K Merling, Sergei A Kuznetsov, Pamela G Robey, Patrick Cahan
The Hippo-YAP/TAZ-TEAD axis promotes multipotency in bone marrow stromal cells. bioRxiv : the preprint server for biology (2024)
Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) 151 (2) (2024)
Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) 151 (2) (2024)
Rachel Offenbacher, Kyle W Jackson, Masanori Hayashi, Jinghang Zhang, Da Peng, Yuqi Tan, Tracy Murray Stewart, Paul Ciero, Jackson Foley, Robert A Casero, Patrick Cahan, David M Loeb
Polyamine Depletion by D, L-alpha-difluoromethylornithine Inhibits Ewing Sarcoma Metastasis by Inducing Ferroptosis. bioRxiv : the preprint server for biology (2024)
Da Peng, Patrick Cahan
OneSC: A computational platform for recapitulating cell state transitions. bioRxiv : the preprint server for biology (2024)
Emily Y Su, Kristen Fread, Sarah Goggin, Eli R Zunder, Patrick Cahan
Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells. Scientific data 11 (1) (2024)
Yu-Hao Cheng, Chun Hei Ryan Chan, Qin Bian, Randall K Merling, Sergei A Kuznetsov, Pamela G Robey, Patrick Cahan
The Hippo-YAP/TAZ-TEAD axis promotes multipotency in bone marrow stromal cells. bioRxiv : the preprint server for biology (2024)
Emily Y Su, Kristen Fread, Sarah Goggin, Eli R Zunder, Patrick Cahan
Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells. Scientific data 11 (1) (2024)
Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) 151 (2) (2024)
Kathleen Noller, Patrick Cahan
Cell cycle expression heterogeneity predicts degree of differentiation. bioRxiv : the preprint server for biology (2024)
Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) (2024)
Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) 151 (2) (2024)
Da Peng, Dorian Jackson, Bianca Palicha, Eric Kernfeld, Nathaniel Laughner, Ashleigh Shoemaker, Susan E Celniker, Rajprasad Loganathan, Patrick Cahan, Deborah J Andrew
Organogenetic transcriptomes of the Drosophila embryo at single cell resolution. Development (Cambridge, England) 151 (2) (2024)
Da Peng, Patrick Cahan
OneSC: A computational platform for recapitulating cell state transitions. bioRxiv : the preprint server for biology (2024)
Emily Y Su, Kristen Fread, Sarah Goggin, Eli R Zunder, Patrick Cahan
Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells. Scientific data 11 (1) (2024)
Kathleen Noller, Patrick Cahan
Cell cycle expression heterogeneity predicts degree of differentiation. bioRxiv : the preprint server for biology (2024)
Eric M Kernfeld, Yunxiao Yang, Joshua S Weinstock, Alexis J Battle, Patrick Cahan
A systematic comparison of computational methods for expression forecasting. bioRxiv : the preprint server for biology (2023)
Yumeng Wen, Emily Y Su, Leyuan Xu, Steven Menez, Dennis G Moledina, Wassim Obeid, Susan T Crowley, Sherry G Mansour, Prasad Devarajan, Lloyd G Cantley, Patrick Cahan, Chirag R Parikh, null null, null null
Analysis of the human kidney transcriptome and plasma proteome identifies markers of proximal tubule maladaptation to injury. Science translational medicine 15 (726) (2023)
Sarah M Somers, Jordana Gilbert-Honick, In Young Choi, Emily K W Lo, HoTae Lim, Shaquielle Dias, Kathryn R Wagner, Hai-Quan Mao, Patrick Cahan, Gabsang Lee, Warren L Grayson
Engineering Skeletal Muscle Grafts with PAX7::GFP-Sorted Human Pluripotent Stem Cell-Derived Myogenic Progenitors on Fibrin Microfiber Bundles for Tissue Regeneration. Bioengineering (Basel, Switzerland) 9 (11) (2022)
Robert Joel Tower, Zhu Li, Yu-Hao Cheng, Xue-Wei Wang, Labchan Rajbhandari, Qian Zhang, Elena Manuela Samaila, Cedric R Uytingco, Arun Venkatesan, Feng-Quan Zhou, Patrick Cahan, Aaron Watkins James, Thomas L Clemens
Spatial transcriptomics reveals a role for sensory nerves in preserving cranial suture patency through modulation of BMP/TGF-β signaling. Proceedings of the National Academy of Sciences of the United States of America 118 (42) (2021)
Da Peng, Rachel Gleyzer, Wen-Hsin Tai, Pavithra Kumar, Qin Bian, Bradley Isaacs, Edroaldo Lummertz da Rocha, Stephanie Cai, Kathleen DiNapoli, Franklin W Huang, Patrick Cahan
Evaluating the transcriptional fidelity of cancer models. Genome medicine 13 (1) (2021)
Ngan F Huang, Ovijit Chaudhuri, Patrick Cahan, Aijun Wang, Adam J Engler, Yingxiao Wang, Sanjay Kumar, Ali Khademhosseini, Song Li
Multi-scale cellular engineering: From molecules to organ-on-a-chip. APL bioengineering 4 (1) (2020)
Qin Bian, Yu-Hao Cheng, Jordan P Wilson, Emily Y Su, Dong Won Kim, Hong Wang, Sooyeon Yoo, Seth Blackshaw, Patrick Cahan
A single cell transcriptional atlas of early synovial joint development. Development (Cambridge, England) 147 (14) (2020)
Sven D Sommerfeld, Christopher M Cherry, Remi M Schwab, Liam Chung, David R Maestas, Philippe Laffont, Julie E Stein, Ada Tam, Sudipto Ganguly, Franck Housseau, Janis M Taube, Drew M Pardoll, Patrick Cahan, Jennifer H Elisseeff
Interleukin-36γ-producing macrophages drive IL-17-mediated fibrosis. Science immunology 4 (40) (2020)
Melissa A Kinney, Linda T Vo, Jenna M Frame, Jessica Barragan, Ashlee J Conway, Shuai Li, Kwok-Kin Wong, James J Collins, Patrick Cahan, Trista E North, Douglas A Lauffenburger, George Q Daley
A systems biology pipeline identifies regulatory networks for stem cell engineering. Nature biotechnology 37 (7) (2019)
Arthur H Radley, Remy M Schwab, Yuqi Tan, Jeesoo Kim, Emily K W Lo, Patrick Cahan
Assessment of engineered cells using CellNet and RNA-seq. Nature protocols 12 (5) (2017)
Pavithra Kumar, Yuqi Tan, Patrick Cahan
Understanding development and stem cells using single cell-based analyses of gene expression. Development (Cambridge, England) 144 (1) (2017)