Pedro A Valiente

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 25

Top Topics

Molecular Dynamics Simulations

Low Birth Weight

Respiratory Syndrome Coronavirus

Top Venues

The journal of physical chemistry. B

Analytical chemistry

Journal of chemical information and modeling

Journal of medicinal chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Xuezhi Xie, Pedro A Valiente, Jisun Kim, Philip M Kim
HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures. ACS central science 10 (5) (2024)
Ayden Malekjahani, Ayokunle A Lekuti, Pedro A Valiente, Matthew Osborne, Vanessa Y C Li, Philip M Kim, Warren W C Chan
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays. Analytical chemistry 96 (23) (2024)
Xuezhi Xie, Pedro A Valiente, Jin Sub Lee, Jisun Kim, Philip M Kim
Antibody-SGM, a Score-Based Generative Model for Antibody Heavy-Chain Design. Journal of chemical information and modeling (2024)
Ayden Malekjahani, Ayokunle A Lekuti, Pedro A Valiente, Matthew Osborne, Vanessa Y C Li, Philip M Kim, Warren W C Chan
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays. Analytical chemistry (2024)
Ayden Malekjahani, Ayokunle A Lekuti, Pedro A Valiente, Matthew Osborne, Vanessa Y C Li, Philip M Kim, Warren W C Chan
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays. Analytical chemistry 96 (23) (2024)
Xuezhi Xie, Pedro A Valiente, Jisun Kim, Philip M Kim
HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures. ACS central science 10 (5) (2024)
Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, Ernesto Moreno, Pedro A Valiente
Assessment of Different Parameters on the Accuracy of Computational Alanine Scanning of Protein-Protein Complexes with the Molecular Mechanics/Generalized Born Surface Area Method. The journal of physical chemistry. B (2023)
Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, Ernesto Moreno, Pedro A Valiente
Assessment of Different Parameters on the Accuracy of Computational Alanine Scanning of Protein-Protein Complexes with the Molecular Mechanics/Generalized Born Surface Area Method. The journal of physical chemistry. B 127 (4) (2023)
Xuezhi Xie, Pedro A Valiente, Philip M Kim
HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures. Bioinformatics (Oxford, England) 39 (1) (2023)
Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, Ernesto Moreno, Pedro A Valiente
Assessment of Different Parameters on the Accuracy of Computational Alanine Scanning of Protein-Protein Complexes with the Molecular Mechanics/Generalized Born Surface Area Method. The journal of physical chemistry. B 127 (4) (2023)
Xuezhi Xie, Pedro A Valiente, Philip M Kim
HelixGAN a deep-learning methodology for conditional de novo design of α-helix structures. Bioinformatics (Oxford, England) 39 (1) (2023)
Mario E Valdés-Tresanco, Mario S Valdés-Tresanco, Ernesto Moreno, Pedro A Valiente
Assessment of Different Parameters on the Accuracy of Computational Alanine Scanning of Protein-Protein Complexes with the Molecular Mechanics/Generalized Born Surface Area Method. The journal of physical chemistry. B 127 (4) (2023)
Luis F Ponce, Daniel P Ramírez-Echemendia, Kalet León, Pedro A Valiente
Predicting a Stable Dimeric Form of the PD1-PDL1 Complex: Implications for Understanding the PD1 Activation Mechanism. The journal of physical chemistry. B (2023)
Pedro A Valiente, Satra Nim, Jisun Kim, Philip M Kim
Computational Design of Potent and Selective d-Peptide Agonists of the Glucagon-like Peptide-2 Receptor. Journal of medicinal chemistry (2023)
Luis F Ponce, Kalet Leon, Pedro A Valiente
Unraveling a Conserved Conformation of the FG Loop upon the Binding of Natural Ligands to the Human and Murine PD1. The journal of physical chemistry. B 126 (7) (2022)
Pedro A Valiente, Satra Nim, JinAh Lee, Seungtaek Kim, Philip M Kim
Targeting the Receptor-Binding Motif of SARS-CoV-2 with D-Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern. Journal of chemical information and modeling 62 (15) (2022)
Mario S Valdés-Tresanco, Mario E Valdés-Tresanco, Marcela Rubio-Carrasquilla, Pedro A Valiente, Ernesto Moreno
Tailored Parameterization of the LIE Method for Calculating the Binding Free Energy of Vps34-Inhibitor Complexes. ACS omega 6 (44) (2021)
Luis F Ponce, Galia Montalvo, Kalet Leon, Pedro A Valiente
Differential Effects of IL2Rα and IL15Rα over the Stability of the Common Beta-Gamma Signaling Subunits of the IL2 and IL15 Receptors. Journal of chemical information and modeling 61 (4) (2021)
Pedro A Valiente, Han Wen, Satra Nim, JinAh Lee, Hyeon Ju Kim, Jinhee Kim, Albert Perez-Riba, Yagya Prasad Paudel, Insu Hwang, Kyun-Do Kim, Seungtaek Kim, Philip M Kim
Computational Design of Potent D-Peptide Inhibitors of SARS-CoV-2. Journal of medicinal chemistry 64 (20) (2021)
Mario S Valdés-Tresanco, Mario E Valdés-Tresanco, Pedro A Valiente, Ernesto Moreno
gmx_MMPBSA: A New Tool to Perform End-State Free Energy Calculations with GROMACS. Journal of chemical theory and computation 17 (10) (2021)
Luis F Ponce, Karina García-Martínez, Kalet León, Pedro A Valiente
Exploring the conformational dynamics of PD1 in complex with different ligands: What we can learn for designing novel PD1 signaling blockers? Proteins 89 (2) (2020)
Pedro A Valiente, David Becerra, Philip M Kim
A Method to Calculate the Relative Binding Free Energy Differences of α-Helical Stapled Peptides. The Journal of organic chemistry 85 (3) (2020)
Elena Moreno-Castillo, Yoanna M Álvarez-Ginarte, Mario E Valdés-Tresanco, Luis A Montero-Cabrera, Ernesto Moreno, Pedro A Valiente
Understanding the disrupting mechanism of the Tau aggregation motif "306 VQIVYK311 " by phenylthiazolyl-hydrazides inhibitors. Journal of molecular recognition : JMR 33 (9) (2020)
Gertrudis Rojas, Tania Carmenate, Julio Felipe Santo-Tomás, Pedro A Valiente, Marlies Becker, Annia Pérez-Riverón, Yaima Tundidor, Yaquelín Ortiz, Jorge Fernandez de Cossio-Diaz, Luis Graça, Stefan Dübel, Kalet León
Directed evolution of super-secreted variants from phage-displayed human Interleukin-2. Scientific reports 9 (1) (2019)
Deborah Doens, Mario E Valdés-Tresanco, Velmarini Vasquez, Maria Beatriz Carreira, Yila De La Guardia, David E Stephens, Viet D Nguyen, Vu T Nguyen, Jianhua Gu, Muralidhar L Hegde, Oleg V Larionov, Pedro A Valiente, Ricardo Lleonart, Patricia L Fernández
Hexahydropyrrolo[2,3-b]indole Compounds as Potential Therapeutics for Alzheimer's Disease. ACS chemical neuroscience 10 (10) (2019)