Philip M Kim

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 21

Top Venues

Analytical chemistry

Nature computational science

PLoS computational biology

Nature communications

University of Toronto

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Toronto

Canada

Professor :: Donnelly Centre

Publications

Xuezhi Xie, Pedro A Valiente, Jisun Kim, Philip M Kim
HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures. ACS central science 10 (5) (2024)
Ayden Malekjahani, Ayokunle A Lekuti, Pedro A Valiente, Matthew Osborne, Vanessa Y C Li, Philip M Kim, Warren W C Chan
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays. Analytical chemistry 96 (23) (2024)
Xuezhi Xie, Pedro A Valiente, Jin Sub Lee, Jisun Kim, Philip M Kim
Antibody-SGM, a Score-Based Generative Model for Antibody Heavy-Chain Design. Journal of chemical information and modeling (2024)
Ayden Malekjahani, Ayokunle A Lekuti, Pedro A Valiente, Matthew Osborne, Vanessa Y C Li, Philip M Kim, Warren W C Chan
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays. Analytical chemistry (2024)
Ayden Malekjahani, Ayokunle A Lekuti, Pedro A Valiente, Matthew Osborne, Vanessa Y C Li, Philip M Kim, Warren W C Chan
Engineering a Rigid Nucleic Acid Structure to Improve the Limit of Detection for Genetic Assays. Analytical chemistry 96 (23) (2024)
Xuezhi Xie, Pedro A Valiente, Jisun Kim, Philip M Kim
HelixDiff, a Score-Based Diffusion Model for Generating All-Atom α-Helical Structures. ACS central science 10 (5) (2024)
Jin Sub Lee, Ji-Sun Kim, Philip M Kim
Score-based generative modeling for de novo protein design. Nature computational science 3 (5) (2023)
Jin Sub Lee, Ji-Sun Kim, Philip M Kim
Score-based generative modeling for de novo protein design. Nature computational science 3 (5) (2023)
Satra Nim, Darren M O'Hara, Carles Corbi-Verge, Albert Perez-Riba, Kazuko Fujisawa, Minesh Kapadia, Hien Chau, Federica Albanese, Grishma Pawar, Mitchell L De Snoo, Sophie G Ngana, Ji-Sun Kim, Omar M A El-Agnaf, Enrico Rennella, Lewis E Kay, Suneil K Kalia, Lorraine V Kalia, Philip M Kim
Disrupting the α-synuclein-ESCRT interaction with a peptide inhibitor mitigates neurodegeneration in preclinical models of Parkinson's disease. Nature communications 14 (1) (2023)
David M Ichikawa, Osama Abdin, Nader Alerasool, Manjunatha Kogenaru, April L Mueller, Han Wen, David O Giganti, Gregory W Goldberg, Samantha Adams, Jeffrey M Spencer, Rozita Razavi, Satra Nim, Hong Zheng, Courtney Gionco, Finnegan T Clark, Alexey Strokach, Timothy R Hughes, Timothée Lionnet, Mikko Taipale, Philip M Kim, Marcus B Noyes
A universal deep-learning model for zinc finger design enables transcription factor reprogramming. Nature biotechnology (2023)
Jin Sub Lee, Ji-Sun Kim, Philip M Kim
Score-based generative modeling for de novo protein design. Nature computational science 3 (5) (2023)
Mohammad Hassan Khatami, Udson C Mendes, Nathan Wiebe, Philip M Kim
Gate-based quantum computing for protein design. PLoS computational biology 19 (4) (2023)
Pedro A Valiente, Satra Nim, Jisun Kim, Philip M Kim
Computational Design of Potent and Selective d-Peptide Agonists of the Glucagon-like Peptide-2 Receptor. Journal of medicinal chemistry (2023)
Osama Abdin, Satra Nim, Han Wen, Philip M Kim
PepNN: a deep attention model for the identification of peptide binding sites. Communications biology 5 (1) (2022)
Pedro A Valiente, Satra Nim, JinAh Lee, Seungtaek Kim, Philip M Kim
Targeting the Receptor-Binding Motif of SARS-CoV-2 with D-Peptides Mimicking the ACE2 Binding Helix: Lessons for Inhibiting Omicron and Future Variants of Concern. Journal of chemical information and modeling 62 (15) (2022)
Joan Teyra, Abdellali Kelil, Shobhit Jain, Mohamed Helmy, Raghav Jajodia, Yogesh Hooda, Jun Gu, Akshay A D'Cruz, Sandra E Nicholson, Jinrong Min, Marius Sudol, Philip M Kim, Gary D Baider, Sachdev S Sidhu
Large-scale survey and database of high affinity ligands for peptide recognition modules. Molecular systems biology 16 (12) (2021)
Pedro A Valiente, David Becerra, Philip M Kim
A Method to Calculate the Relative Binding Free Energy Differences of α-Helical Stapled Peptides. The Journal of organic chemistry 85 (3) (2020)
Alexey Strokach, Carles Corbi-Verge, Philip M Kim
Predicting changes in protein stability caused by mutation using sequence-and structure-based methods in a CAGI5 blind challenge. Human mutation 40 (9) (2019)
Seong Jun Park, Sanggeun Song, Gil-Suk Yang, Philip M Kim, Sangwoon Yoon, Ji-Hyun Kim, Jaeyoung Sung
The Chemical Fluctuation Theorem governing gene expression. Nature communications 9 (1) (2018)
Michael Garton, Satra Nim, Tracy A Stone, Kyle Ethan Wang, Charles M Deber, Philip M Kim
Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB. Proceedings of the National Academy of Sciences of the United States of America 115 (7) (2018)
Mark G F Sun, Philip M Kim
Data driven flexible backbone protein design. PLoS computational biology 13 (8) (2017)

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Publication Activity (10 Years)

Top Topics

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Philip M Kim