Joseph A Piccirilli

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 33

Top Topics

Structural Basis

Hepatitis C Virus

Gold Nanoparticles

Top Venues

Journal of the American Chemical Society

ACS chemical biology

Proceedings of the National Academy of Sciences of the United States of America

This page only lists publications with an associated author ORCID identifier.

Publications

Srilahari Namani, Kyril Kavetsky, Chih-Yuan Lin, Sunita Maharjan, Howard B Gamper, Nan-Sheng Li, Joseph A Piccirilli, Ya-Ming Hou, Marija Drndić
Unraveling RNA Conformation Dynamics in Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episode Syndrome with Solid-State Nanopores. ACS nano (2024)
Aleksandar Radakovic, Anna Lewicka, Marco Todisco, Harry R M Aitken, Zoe Weiss, Shannon Kim, Abdullah Bannan, Joseph A Piccirilli, Jack W Szostak
A potential role for RNA aminoacylation prior to its role in peptide synthesis. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Aleksandar Radakovic, Anna Lewicka, Marco Todisco, Harry R M Aitken, Zoe Weiss, Shannon Kim, Abdullah Bannan, Joseph A Piccirilli, Jack W Szostak
Structure-guided aminoacylation and assembly of chimeric RNAs. bioRxiv : the preprint server for biology (2024)
Srilahari Namani, Kyril Kavetsky, Chih-Yuan Lin, Sunita Maharjan, Howard B Gamper, Nan-Sheng Li, Joseph A Piccirilli, Ya-Ming Hou, Marija Drndić
Unraveling RNA Conformation Dynamics in Mitochondrial Encephalomyopathy, Lactic Acidosis, and Stroke-like Episode Syndrome with Solid-State Nanopores. ACS nano 18 (26) (2024)
Aleksandar Radakovic, Anna Lewicka, Marco Todisco, Harry R M Aitken, Zoe Weiss, Shannon Kim, Abdullah Bannan, Joseph A Piccirilli, Jack W Szostak
A potential role for RNA aminoacylation prior to its role in peptide synthesis. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Aleksandar Radakovic, Anna Lewicka, Marco Todisco, Harry R M Aitken, Zoe Weiss, Shannon Kim, Abdullah Bannan, Joseph A Piccirilli, Jack W Szostak
A potential role for RNA aminoacylation prior to its role in peptide synthesis. Proceedings of the National Academy of Sciences of the United States of America 121 (35) (2024)
Benjamin P Weissman, Şölen Ekesan, Hsuan-Chun Lin, Shahbaz Gardezi, Nan-Sheng Li, Timothy J Giese, Erika McCarthy, Michael E Harris, Darrin M York, Joseph A Piccirilli
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis. Journal of the American Chemical Society 145 (5) (2023)
Nan-Sheng Li, Joseph A Piccirilli, Geoffrey L Greene
Reinvestigating the Synthesis and Characterization of Ethyl 3-[5-(2-Ethoxycarbonyl-1-methylvinyloxy)-1-methyl-1 H -indol-3-yl]-but-2-enoate. ACS omega 8 (35) (2023)
Benjamin P Weissman, Şölen Ekesan, Hsuan-Chun Lin, Shahbaz Gardezi, Nan-Sheng Li, Timothy J Giese, Erika McCarthy, Michael E Harris, Darrin M York, Joseph A Piccirilli
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis. Journal of the American Chemical Society 145 (5) (2023)
Suhyun Yoon, Edward Ollie, Darrin M York, Joseph A Piccirilli, Michael E Harris
Rapid Kinetics of Pistol Ribozyme: Insights into Limits to RNA Catalysis. Biochemistry (2023)
Benjamin P Weissman, Şölen Ekesan, Hsuan-Chun Lin, Shahbaz Gardezi, Nan-Sheng Li, Timothy J Giese, Erika McCarthy, Michael E Harris, Darrin M York, Joseph A Piccirilli
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis. Journal of the American Chemical Society 145 (5) (2023)
Benjamin P Weissman, Şölen Ekesan, Hsuan-Chun Lin, Shahbaz Gardezi, Nan-Sheng Li, Timothy J Giese, Erika McCarthy, Michael E Harris, Darrin M York, Joseph A Piccirilli
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis. Journal of the American Chemical Society (2023)
Anna Lewicka, Christina Roman, Stacey Jones, Michael Disare, Phoebe A Rice, Joseph A Piccirilli
Crystal structure of a cap-independent translation enhancer RNA. Nucleic acids research (2023)
Benjamin P Weissman, Şölen Ekesan, Hsuan-Chun Lin, Shahbaz Gardezi, Nan-Sheng Li, Timothy J Giese, Erika McCarthy, Michael E Harris, Darrin M York, Joseph A Piccirilli
Dissociative Transition State in Hepatitis Delta Virus Ribozyme Catalysis. Journal of the American Chemical Society 145 (5) (2023)
Daniel Krochmal, Yaming Shao, Nan-Sheng Li, Saurja DasGupta, Sandip A Shelke, Deepak Koirala, Joseph A Piccirilli
Structural basis for substrate binding and catalysis by a self-alkylating ribozyme. Nature chemical biology 18 (4) (2022)
Di Liu, François A Thélot, Joseph A Piccirilli, Maofu Liao, Peng Yin
Sub-3-Å cryo-EM structure of RNA enabled by engineered homomeric self-assembly. Nature methods 19 (5) (2022)
Huw C Rees, Wojciech Gogacz, Nan-Sheng Li, Deepak Koirala, Joseph A Piccirilli
Structural Basis for Fluorescence Activation by Pepper RNA. ACS chemical biology 17 (7) (2022)
Christina Roman, Anna Lewicka, Deepak Koirala, Nan-Sheng Li, Joseph A Piccirilli
The SARS-CoV-2 Programmed -1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography. ACS chemical biology 16 (8) (2021)
Saurja DasGupta, Joseph A Piccirilli
The Varkud Satellite Ribozyme: A Thirty-Year Journey through Biochemistry, Crystallography, and Computation. Accounts of chemical research 54 (11) (2021)
Nan-Sheng Li, Selene C Koo, Joseph A Piccirilli
Synthesis of Oligoribonucleotides Containing a 2'-Amino-5'-S-phosphorothiolate Linkage. The Journal of organic chemistry 86 (19) (2021)
Di Liu, Yaming Shao, Joseph A Piccirilli, Yossi Weizmann
Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution. Science advances 7 (39) (2021)
David A Hiller, Brian F Dunican, Sunitha Nallur, Nan-Sheng Li, Joseph A Piccirilli, Scott A Strobel
The Positively Charged Active Site of the Bacterial Toxin RelE Causes a Large Shift in the General Base pKa. Biochemistry 59 (17) (2020)
Di Liu, Cody W Geary, Gang Chen, Yaming Shao, Mo Li, Chengde Mao, Ebbe S Andersen, Joseph A Piccirilli, Paul W K Rothemund, Yossi Weizmann
Branched kissing loops for the construction of diverse RNA homooligomeric nanostructures. Nature chemistry 12 (3) (2020)
Abir Ganguly, Benjamin P Weissman, Timothy J Giese, Nan-Sheng Li, Shuichi Hoshika, Saieesh Rao, Steven A Benner, Joseph A Piccirilli, Darrin M York
Confluence of theory and experiment reveals the catalytic mechanism of the Varkud satellite ribozyme. Nature chemistry 12 (2) (2020)
Philip C Bevilacqua, Michael E Harris, Joseph A Piccirilli, Colin S Gaines, Abir Ganguly, Ken Kostenbader, Şölen Ekesan, Darrin M York
An Ontology for Facilitating Discussion of Catalytic Strategies of RNA-Cleaving Enzymes. ACS chemical biology 14 (6) (2019)
Deepak Koirala, Anna Lewicka, Yelena Koldobskaya, Hao Huang, Joseph A Piccirilli
Synthetic Antibody Binding to a Preorganized RNA Domain of Hepatitis C Virus Internal Ribosome Entry Site Inhibits Translation. ACS chemical biology 15 (1) (2019)
Deepak Koirala, Yaming Shao, Yelena Koldobskaya, James R Fuller, Andrew M Watkins, Sandip A Shelke, Evgeny V Pilipenko, Rachel J Hagey, Phoebe A Rice, Joseph A Piccirilli
A conserved RNA structural motif for organizing topology within picornaviral internal ribosome entry sites. Nature communications 10 (1) (2019)
Shuichi Hoshika, Nicole A Leal, Myong-Jung Kim, Myong-Sang Kim, Nilesh B Karalkar, Hyo-Joong Kim, Alison M Bates, Norman E Watkins, Holly A SantaLucia, Adam J Meyer, Saurja DasGupta, Joseph A Piccirilli, Andrew D Ellington, John SantaLucia, Millie M Georgiadis, Steven A Benner
Hachimoji DNA and RNA: A genetic system with eight building blocks. Science (New York, N.Y.) 363 (6429) (2019)
Colin S Gaines, Joseph A Piccirilli, Darrin M York
The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme design. RNA (New York, N.Y.) 26 (2) (2019)
Timothy J Wilson, Yijin Liu, Nan-Sheng Li, Qing Dai, Joseph A Piccirilli, David M J Lilley
Comparison of the Structures and Mechanisms of the Pistol and Hammerhead Ribozymes. Journal of the American Chemical Society 141 (19) (2019)
Jun Lu, Selene C Koo, Benjamin P Weissman, Michael E Harris, Nan-Sheng Li, Joseph A Piccirilli
Evidence That Nucleophile Deprotonation Exceeds Bond Formation in the HDV Ribozyme Transition State. Biochemistry 57 (25) (2018)
Sandip A Shelke, Yaming Shao, Artur Laski, Deepak Koirala, Benjamin P Weissman, James R Fuller, Xiaohong Tan, Tudor P Constantin, Alan S Waggoner, Marcel P Bruchez, Bruce A Armitage, Joseph A Piccirilli
Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif. Nature communications 9 (1) (2018)
Nan-Sheng Li, Jun Lu, Joseph A Piccirilli
Synthesis of 5'-Thio-3'-O-ribonucleoside Phosphoramidites. The Journal of organic chemistry 82 (23) (2017)