Philip Richard Orrin Payne (Philip Ro Payne, Philip Payne, Philip R Payne, Philip R O Payne)

Publication Activity (10 Years)

Years Active: 2014-2024
Publications (10 Years): 52

Top Topics

Machine Learning

Signaling Pathway

Electronic Health Record

Top Venues

Journal of the American Medical Informatics Association : JAMIA

bioRxiv : the preprint server for biology

medRxiv : the preprint server for health sciences

This page only lists publications with an associated author ORCID identifier.

Publications

James R Jones, Daniel Gottlieb, Andrew J McMurry, Ashish Atreja, Pankaja M Desai, Brian Edward Dixon, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu Shankar, Yauheni Solad, Adam B Wilcox, Momeena S Ali, Eugene Kang, Andrew M Martin, Elizabeth Sprouse, David E Taylor, Michael Terry, Vladimir Ignatov, null null, Kenneth D Mandl
Real world performance of the 21st Century Cures Act population-level application programming interface. Journal of the American Medical Informatics Association : JAMIA (2024)
Jiarui Feng, Michael Province, Guangfu Li, Philip Richard Orrin Payne, Yixin Chen, Fuhai Li
PathFinder: a novel graph transformer model to infer multi-cell intra- and inter-cellular signaling pathways and communications. bioRxiv : the preprint server for biology (2024)
Heming Zhang, Dekang Cao, Zirui Chen, Xiuyuan Zhang, Yixin Chen, Cole Sessions, Cruchaga Carlos, Philip Richard Orrin Payne, Guangfu Li, Michael Province, Fuhai Li
mosGraphGen: a novel tool to generate multi-omic signaling graphs to facilitate integrative and interpretable graph AI model development. bioRxiv : the preprint server for biology (2024)
James R Jones, Daniel Gottlieb, Andrew J McMurry, Ashish Atreja, Pankaja M Desai, Brian Edward Dixon, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu Shankar, Yauheni Solad, Adam B Wilcox, Momeena S Ali, Eugene Kang, Andrew M Martin, Elizabeth Sprouse, David E Taylor, Michael Terry, Vladimir Ignatov, Kenneth D Mandl
Real world performance of the 21st Century Cures Act population-level application programming interface. Journal of the American Medical Informatics Association : JAMIA 31 (5) (2024)
Heming Zhang, Dekang Cao, Zirui Chen, Xiuyuan Zhang, Yixin Chen, Cole Sessions, Cruchaga Carlos, Philip Richard Orrin Payne, Guangfu Li, Michael Province, Fuhai Li
mosGraphGen: a novel tool to generate multi-omic signaling graphs to facilitate integrative and interpretable graph AI model development. bioRxiv : the preprint server for biology (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. Journal of the American Medical Informatics Association : JAMIA 31 (8) (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: A federated EHR-based learning system powered by FHIR and AI. medRxiv : the preprint server for health sciences (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: A federated EHR-based learning system powered by FHIR and AI. medRxiv : the preprint server for health sciences (2024)
Sayantan Kumar, Sean C Yu, Andrew Michelson, Thomas G Kannampallil, Philip Richard Orrin Payne
HiMAL: Multimodal Hierarchical Multi-task Auxiliary Learning framework for predicting Alzheimer's disease progression. JAMIA open 7 (3) (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: A federated EHR-based learning system powered by FHIR and AI. medRxiv : the preprint server for health sciences (2024)
Patrick G Lyons, David A Dorr, Genevieve B Melton, Karandeep S Singh, Philip Richard Orrin Payne
Meeting the Artificial Intelligence Needs of U.S. Health Systems. Annals of internal medicine (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: A federated EHR-based learning system powered by FHIR and AI. medRxiv : the preprint server for health sciences (2024)
Kriti Bhattarai, Inez Y Oh, Jonathan Moran Sierra, Jonathan Tang, Philip Richard Orrin Payne, Zach Abrams, Albert M Lai
Leveraging GPT-4 for identifying cancer phenotypes in electronic health records: a performance comparison between GPT-4, GPT-3.5-turbo, Flan-T5, Llama-3-8B, and spaCy's rule-based and machine learning-based methods. JAMIA open 7 (3) (2024)
Jiarui Feng, Michael Province, Guangfu Li, Philip Richard Orrin Payne, Yixin Chen, Fuhai Li
PathFinder: a novel graph transformer model to infer multi-cell intra- and inter-cellular signaling pathways and communications. bioRxiv : the preprint server for biology (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. Journal of the American Medical Informatics Association : JAMIA 31 (8) (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. Journal of the American Medical Informatics Association : JAMIA (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: A federated EHR-based learning system powered by FHIR and AI. medRxiv : the preprint server for health sciences (2024)
Heming Zhang, Dekang Cao, Tim Xu, Emily Chen, Guangfu Li, Yixin Chen, Philip Richard Orrin Payne, Michael Province, Fuhai Li
mosGraphFlow: a novel integrative graph AI model mining disease targets from multi-omic data. bioRxiv : the preprint server for biology (2024)
James R Jones, Daniel Gottlieb, Andrew J McMurry, Ashish Atreja, Pankaja M Desai, Brian Edward Dixon, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu Shankar, Yauheni Solad, Adam B Wilcox, Momeena S Ali, Eugene Kang, Andrew M Martin, Elizabeth Sprouse, David E Taylor, Michael Terry, Vladimir Ignatov, Kenneth D Mandl
Real world performance of the 21st Century Cures Act population-level application programming interface. Journal of the American Medical Informatics Association : JAMIA 31 (5) (2024)
Kriti Bhattarai, Inez Y Oh, Jonathan Moran Sierra, Jonathan Tang, Philip Richard Orrin Payne, Zach Abrams, Albert M Lai
Leveraging GPT-4 for identifying cancer phenotypes in electronic health records: a performance comparison between GPT-4, GPT-3.5-turbo, Flan-T5, Llama-3-8B, and spaCy's rule-based and machine learning-based methods. JAMIA open 7 (3) (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. Journal of the American Medical Informatics Association : JAMIA 31 (8) (2024)
Kriti Bhattarai, Inez Y Oh, Jonathan Moran Sierra, Jonathan Tang, Philip Richard Orrin Payne, Zach Abrams, Albert M Lai
Leveraging GPT-4 for identifying cancer phenotypes in electronic health records: a performance comparison between GPT-4, GPT-3.5-turbo, Flan-T5, Llama-3-8B, and spaCy's rule-based and machine learning-based methods. JAMIA open 7 (3) (2024)
James R Jones, Daniel Gottlieb, Andrew J McMurry, Ashish Atreja, Pankaja M Desai, Brian Edward Dixon, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu Shankar, Yauheni Solad, Adam B Wilcox, Momeena S Ali, Eugene Kang, Andrew M Martin, Elizabeth Sprouse, David E Taylor, Michael Terry, Vladimir Ignatov, null null, Kenneth D Mandl
Real world performance of the 21st Century Cures Act population-level application programming interface. Journal of the American Medical Informatics Association : JAMIA (2024)
Kriti Bhattarai, Inez Y Oh, Jonathan Moran Sierra, Jonathan Tang, Philip Richard Orrin Payne, Zach Abrams, Albert M Lai
Leveraging GPT-4 for identifying cancer phenotypes in electronic health records: a performance comparison between GPT-4, GPT-3.5-turbo, Flan-T5, Llama-3-8B, and spaCy's rule-based and machine learning-based methods. JAMIA open 7 (3) (2024)
Jiarui Feng, Michael Province, Guangfu Li, Philip Richard Orrin Payne, Yixin Chen, Fuhai Li
PathFinder: a novel graph transformer model to infer multi-cell intra- and inter-cellular signaling pathways and communications. bioRxiv : the preprint server for biology (2024)
Andrew J McMurry, Daniel I Gottlieb, Timothy A Miller, James R Jones, Ashish Atreja, Jennifer Crago, Pankaja M Desai, Brian Edward Dixon, Matthew Garber, Vladimir Ignatov, Lyndsey A Kirchner, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Elizabeth A Sprouse, Michael Terry, Adam B Wilcox, Kenneth D Mandl
Cumulus: a federated electronic health record-based learning system powered by Fast Healthcare Interoperability Resources and artificial intelligence. Journal of the American Medical Informatics Association : JAMIA (2024)
Abigail E Lewis, Nicole G Weiskopf, Zachary B Abrams, Randi E Foraker, Albert M Lai, Philip Richard Orrin Payne, Aditi Gupta
Electronic health record data quality assessment and tools: a systematic review. Journal of the American Medical Informatics Association : JAMIA (2023)
James R Jones, Daniel I Gottlieb, Andrew J McMurry, Ashish Atreja, Pankaja M Desai, Brian Edward Dixon, Philip Richard Orrin Payne, Anil J Saldanha, Prabhu R V Shankar, Yauheni V Solad, Adam B Wilcox, Momeena S Ali, Eugene Kang, Andrew M Martin, Elizabeth Sprouse, David Taylor, Michael Terry, Vladimir Ignatov, null null, Kenneth D Mandl
Real World Performance of the 21st Century Cures Act Population Level Application Programming Interface. medRxiv : the preprint server for health sciences (2023)
Sayantan Kumar, Thomas Earnest, Philip Richard Orrin Payne, Aristeidis Sotiras, null null
Analyse patient-level heterogeneity in Alzheimer's Disease using multimodal normative modelling. bioRxiv : the preprint server for biology (2023)
Bing Xue, Neel Shah, Hanqing Yang, Thomas G Kannampallil, Philip Richard Orrin Payne, Chenyang Lu, Ahmed Sameh Said
Multi-horizon predictive models for guiding extracorporeal resource allocation in critically ill COVID-19 patients. Journal of the American Medical Informatics Association : JAMIA 30 (4) (2023)
Kriti Bhattarai, Inez Y Oh, Jonathan Moran Sierra, Philip Richard Orrin Payne, Zachary B Abrams, Albert M Lai
Leveraging GPT-4 for Identifying Clinical Phenotypes in Electronic Health Records: A Performance Comparison between GPT-4, GPT-3.5-turbo and spaCy's Rule-based & Machine Learning-based methods. bioRxiv : the preprint server for biology (2023)
Patrick G Lyons, Vanessa Chen, Tejas Chellu Sekhar, Colleen A McEvoy, Marin H Kollef, Ramaswamy Govindan, Peter Westervelt, Kelly C Vranas, Thomas M Maddox, Elvin Hsing Geng, Philip Richard Orrin Payne, Mary C Politi
Clinician Perspectives on Barriers and Enablers to Implementing an Inpatient Oncology Early Warning System: A Mixed-Methods Study. JCO clinical cancer informatics 7 (2023)
Inez Y Oh, Suzanne E Schindler, Nupur Ghoshal, Albert M Lai, Philip Richard Orrin Payne, Aditi Gupta
Extraction of clinical phenotypes for Alzheimer's disease dementia from clinical notes using natural language processing. JAMIA open 6 (1) (2023)
Patrick G Lyons, Vanessa Chen, Tejas Chellu Sekhar, Colleen A McEvoy, Marin H Kollef, Ramaswamy Govindan, Peter Westervelt, Kelly C Vranas, Thomas M Maddox, Elvin Hsing Geng, Philip Richard Orrin Payne, Mary C Politi
Clinician Perspectives on Barriers and Enablers to Implementing an Inpatient Oncology Early Warning System: A Mixed-Methods Study. JCO clinical cancer informatics 7 (2023)
Fuhai Li, Zehao Dong, Qihang Zhao, Philip Richard Orrin Payne, Michael A Province, Cruchaga Carlos, Muhan Zhang, Tianyu Zhao, Yixin Chen
Highly accurate disease diagnosis and highly reproducible biomarker identification with PathFormer. Research square (2023)
Inez Y Oh, Suzanne E Schindler, Nupur Ghoshal, Albert M Lai, Philip Richard Orrin Payne, Aditi Gupta
Extraction of clinical phenotypes for Alzheimer's disease dementia from clinical notes using natural language processing. JAMIA open 6 (1) (2023)
Abigail Lewis, Aditi Gupta, Inez Y Oh, Nicholas N Ashton, Nupur Ghoshal, Zachary B Abrams, Randi E Foraker, Barbara Joy Snider, John C Morris, Joyce Joy E Balls-Berry, Mahendra Gupta, Philip Richard Orrin Payne, Albert M Lai
The Association Between Socioeconomic Factors, Race, and Usage of a Specialty Memory Clinic. Neurology (2023)
Philip Richard Orrin Payne, Adam B Wilcox, Peter J Embi, Christopher A Longhurst
Better together: Integrating biomedical informatics and healthcare IT operations to create a learning health system during the COVID-19 pandemic. Learning health systems 6 (2) (2022)
Mackenzie R Hofford, Sean C Yu, Alistair E W Johnson, Albert M Lai, Philip Richard Orrin Payne, Andrew P Michelson
OpenSep: a generalizable open source pipeline for SOFA score calculation and Sepsis-3 classification. JAMIA open 5 (4) (2022)
Jason A Thomas, Randi E Foraker, Noa Zamstein, Jon D Morrow, Philip Richard Orrin Payne, Adam B Wilcox, null null
Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). Journal of the American Medical Informatics Association : JAMIA 29 (8) (2022)
Mackenzie R Hofford, Sean C Yu, Alistair E W Johnson, Albert M Lai, Philip Richard Orrin Payne, Andrew P Michelson
OpenSep: a generalizable open source pipeline for SOFA score calculation and Sepsis-3 classification. JAMIA open 5 (4) (2022)
Sean C Yu, Mackenzie R Hofford, Albert M Lai, Marin H Kollef, Philip Richard Orrin Payne, Andrew P Michelson
Respiratory support status from EHR data for adult population: classification, heuristics, and usage in predictive modeling. Journal of the American Medical Informatics Association : JAMIA 29 (5) (2022)
Peter J Embi, Philip Richard Orrin Payne, Charles P Friedman
Learning from data: A recurring feature on the science and practice of data-driven learning health systems. Learning health systems 6 (1) (2021)
Lisa Bastarache, Jeffrey S Brown, James J Cimino, David A Dorr, Peter J Embi, Philip Richard Orrin Payne, Adam B Wilcox, Mark G Weiner
Developing real-world evidence from real-world data: Transforming raw data into analytical datasets. Learning health systems 6 (1) (2021)
Randi E Foraker, Aixia Guo, Jason A Thomas, Noa Zamstein, Philip Richard Orrin Payne, Adam B Wilcox, null null
The National COVID Cohort Collaborative: Analyses of Original and Computationally Derived Electronic Health Record Data. Journal of medical Internet research 23 (10) (2021)
Sayantan Kumar, Inez Oh, Suzanne Schindler, Albert M Lai, Philip Richard Orrin Payne, Aditi Gupta
Machine learning for modeling the progression of Alzheimer disease dementia using clinical data: a systematic literature review. JAMIA open 4 (3) (2021)
Sean C Yu, Nirmala Shivakumar, Kevin Betthauser, Aditi Gupta, Albert M Lai, Marin H Kollef, Philip Richard Orrin Payne, Andrew P Michelson
Comparison of early warning scores for sepsis early identification and prediction in the general ward setting. JAMIA open 4 (3) (2021)
Fuhai Li, Abdallah Eteleeb, William Buchser, Guoqiao Wang, Chengjie Xiong, Philip Richard Orrin Payne, Eric McDade, Celeste M Karch, Oscar Harari, Carlos Cruchaga
Weakly activated core inflammation pathways were identified as a central signaling mechanism contributing to the chronic neurodegeneration in Alzheimer's disease. bioRxiv : the preprint server for biology (2021)
Jinzhao Chen, Gaoyu Wu, Andrew Michelson, Zachary Vesoulis, Jennifer Bogner, John D Corrigan, Philip Richard Orrin Payne, Fuhai Li
Mining reported adverse events induced by potential opioid-drug interactions. JAMIA open 3 (1) (2020)
Randi E Foraker, Albert M Lai, Thomas G Kannampallil, Keith F Woeltje, Anne M Trolard, Philip Richard Orrin Payne
Transmission dynamics: Data sharing in the COVID-19 era. Learning health systems (2020)
Randi E Foraker, Sean C Yu, Aditi Gupta, Andrew P Michelson, Jose A Pineda Soto, Ryan Colvin, Francis Loh, Marin H Kollef, Thomas Maddox, Bradley Evanoff, Hovav Dror, Noa Zamstein, Albert M Lai, Philip Richard Orrin Payne
Spot the difference: comparing results of analyses from real patient data and synthetic derivatives. JAMIA open 3 (4) (2020)
Philip Richard Orrin Payne, Omkar Lele, Beth Johnson, Erin Holve
Enabling Open Science for Health Research: Collaborative Informatics Environment for Learning on Health Outcomes (CIELO). Journal of medical Internet research 19 (7) (2017)
Aaron Albin, Xiaonan Ji, Tara B Borlawsky, Zhan Ye, Simon Lin Linwood, Philip Richard Orrin Payne, Kun Huang, Yang Xiang
Enabling online studies of conceptual relationships between medical terms: developing an efficient web platform. JMIR medical informatics 2 (2) (2014)