Pierre Peterlongo

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 10

Top Venues

PeerJ

Molecular biology and evolution

Nature computational science

Bioinformatics advances

Inria Centre de Recherche Rennes Bretagne Atlantique

Université Paris-Est (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Inria Centre de Recherche Rennes Bretagne Atlantique Oct 01 2006

France

Research Associate / Chargé de recherche :: GenScale

Education History

Université Paris-Est Sep 01 2000 - Sep 30 2006

France

PHD :: Computer science

Publications

Teo Lemane, Nolan Lezzoche, Julien Lecubin, Eric Pelletier, Magali Lescot, Rayan Chikhi, Pierre Peterlongo
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA. Nature computational science 4 (2) (2024)
Teo Lemane, Nolan Lezzoche, Julien Lecubin, Eric Pelletier, Magali Lescot, Rayan Chikhi, Pierre Peterlongo
Indexing and real-time user-friendly queries in terabyte-sized complex genomic datasets with kmindex and ORA. Nature computational science 4 (2) (2024)
Benedikt Kirsch-Gerweck, Leonard Bohnenkämper, Michel T Henrichs, Jarno N Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Joachim Burger, Jens Stoye, Yoan Diekmann
HaploBlocks: eficient detection of positive selection in large population genomic datasets. Molecular biology and evolution (2023)
Benedikt Kirsch-Gerweck, Leonard Bohnenkämper, Michel T Henrichs, Jarno N Alanko, Hideo Bannai, Bastien Cazaux, Pierre Peterlongo, Joachim Burger, Jens Stoye, Yoan Diekmann
HaploBlocks: Efficient Detection of Positive Selection in Large Population Genomic Datasets. Molecular biology and evolution 40 (3) (2023)
Yoann Dufresne, Teo Lemane, Pierre Marijon, Pierre Peterlongo, Amatur Rahman, Marek Kokot, Paul Medvedev, Sebastian Deorowicz, Rayan Chikhi
The K-mer File Format: a standardized and compact disk representation of sets of k-mers. Bioinformatics (Oxford, England) 38 (18) (2022)
Teo Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections. Bioinformatics advances 2 (1) (2022)
Teo Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections. Bioinformatics advances 2 (1) (2022)
Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo
StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs. PeerJ 9 (2021)
Jérémy Gauthier, Charlotte Mouden, Tomasz Suchan, Nadir Alvarez, Nils Arrigo, Chloé Riou, Claire Lemaitre, Pierre Peterlongo
DiscoSnp-RAD: de novo detection of small variants for RAD-Seq population genomics. PeerJ 8 (2020)
Camille Marchet, Pierre Morisse, Lolita Lecompte, Arnaud Lefebvre, Thierry Lecroq, Pierre Peterlongo, Antoine Limasset
ELECTOR: evaluator for long reads correction methods. NAR genomics and bioinformatics 2 (1) (2019)

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Publication Activity (10 Years)

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Pierre Peterlongo