Paul Medvedev

Publication Activity (10 Years)

Years Active: 2019-2023
Publications (10 Years): 14

Top Topics

Machine Learning

Respiratory Syndrome Coronavirus

Gene Expression

Top Venues

Bioinformatics advances

Genome research

PLoS computational biology

Genome biology and evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Barış Ekim, Kristoffer Sahlin, Paul Medvedev, Bonnie Berger, Rayan Chikhi
Efficient mapping of accurate long reads in minimizer space with mapquik. Genome research (2023)
Marta Tomaszkiewicz, Kristoffer Sahlin, Paul Medvedev, Kateryna D Makova
Transcript Isoform Diversity of Ampliconic Genes on the Y Chromosome of Great Apes. Genome biology and evolution (2023)
Antonio Blanca, Robert S Harris, David Koslicki, Paul Medvedev
The Statistics of k -mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches. Journal of computational biology : a journal of computational molecular cell biology 29 (2) (2022)
Yoann Dufresne, Teo Lemane, Pierre Marijon, Pierre Peterlongo, Amatur Rahman, Marek Kokot, Paul Medvedev, Sebastian Deorowicz, Rayan Chikhi
The K-mer File Format: a standardized and compact disk representation of sets of k-mers. Bioinformatics (Oxford, England) 38 (18) (2022)
Yilin Feng, Gulsum Gudukbay Akbulut, Xulong Tang, Jashwant Raj Gunasekaran, Amatur Rahman, Paul Medvedev, Mahmut Kandemir
GPU-accelerated and pipelined methylation calling. Bioinformatics advances 2 (1) (2022)
Merly Escalona, Jake VanCampen, Nicholas W Maurer, Marina Haukness, Mariam Okhovat, Robert S Harris, Allison Watwood, Gabrielle A Hartley, Rachel J O'Neill, Paul Medvedev, Kateryna D Makova, Christopher Vollmers, Lucia Carbone, Richard E Green
Whole-genome sequence and assembly of the Javan gibbon (Hylobates moloch). The Journal of heredity (2022)
Yilin Feng, Gulsum Gudukbay Akbulut, Xulong Tang, Jashwant Raj Gunasekaran, Amatur Rahman, Paul Medvedev, Mahmut Kandemir
GPU-accelerated and pipelined methylation calling. Bioinformatics advances 2 (1) (2022)
Teo Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections. Bioinformatics advances 2 (1) (2022)
Teo Lemane, Paul Medvedev, Rayan Chikhi, Pierre Peterlongo
kmtricks: efficient and flexible construction of Bloom filters for large sequencing data collections. Bioinformatics advances 2 (1) (2022)
Paul Medvedev, Mihai Pop
What do Eulerian and Hamiltonian cycles have to do with genome assembly? PLoS computational biology 17 (5) (2021)
Ilia Minkin, Paul Medvedev
Scalable multiple whole-genome alignment and locally collinear block construction with SibeliaZ. Nature communications 11 (1) (2020)
Camille Marchet, Christina Boucher, Simon J Puglisi, Paul Medvedev, Mikaël Salson, Rayan Chikhi
Data structures based on k-mers for querying large collections of sequencing data sets. Genome research 31 (1) (2020)
Paul Medvedev
Ten Simple Rules for writing algorithmic bioinformatics conference papers. PLoS computational biology 16 (4) (2020)
Samarth Rangavittal, Natasha Stopa, Marta Tomaszkiewicz, Kristoffer Sahlin, Kateryna D Makova, Paul Medvedev
DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies. BMC genomics 20 (1) (2019)