Pleuni S Pennings (Pleuni Pennings)

ORCID

Publication Activity (10 Years)

Years Active: 2015-2024
Publications (10 Years): 20

Top Venues

bioRxiv : the preprint server for biology

G3 (Bethesda, Md.)

Proceedings of the National Academy of Sciences of the United States of America

Evolutionary applications

This page only lists publications with an associated author ORCID identifier.

Publications

Lucy Moctezuma, Lorena Benitez Rivera, Florentine van Nouhuijs, Faye Orcales, Allen Kim, Ross Campbell, Megumi Fuse, Pleuni S Pennings
Using a decision tree to predict the number of COVID cases: a tutorial for beginners. bioRxiv : the preprint server for biology (2024)
Lucy Moctezuma, Lorena Benitez Rivera, Florentine van Nouhuijs, Faye Orcales, Allen Kim, Ross Campbell, Megumi Fuse, Pleuni S Pennings
Using a decision tree to predict the number of COVID cases: a tutorial for beginners. bioRxiv : the preprint server for biology (2024)
Lucy Moctezuma, Lorena Benitez Rivera, Florentine van Nouhuijs, Faye Orcales, Allen Kim, Ross Campbell, Megumi Fuse, Pleuni S Pennings
Using a decision tree to predict COVID case numbers: a tutorial for beginners. bioRxiv : the preprint server for biology (2023)
Lucy Moctezuma, Lorena Benitez Rivera, Florentine van Nouhuijs, Faye Orcales, Allen Kim, Ross Campbell, Megumi Fuse, Pleuni S Pennings
Using a decision tree to predict COVID case numbers: a tutorial for beginners. bioRxiv : the preprint server for biology (2023)
Lucy Moctezuma, Lorena Benitez Rivera, Florentine van Nouhuijs, Faye Orcales, Allen Kim, Ross Campbell, Megumi Fuse, Pleuni S Pennings
Using a decision tree to predict COVID case numbers: a tutorial for beginners. bioRxiv : the preprint server for biology (2023)
Lucy Moctezuma, Lorena Benitez Rivera, Florentine van Nouhuijs, Faye Orcales, Allen Kim, Ross Campbell, Megumi Fuse, Pleuni S Pennings
Using a decision tree to predict COVID case numbers: a tutorial for beginners. bioRxiv : the preprint server for biology (2023)
Pleuni S Pennings, C Brandon Ogbunugafor, Ruth Hershberg
Reversion is most likely under high mutation supply when compensatory mutations do not fully restore fitness costs. G3 (Bethesda, Md.) 12 (9) (2022)
Meike T Wortel, Deepa Agashe, Susan F Bailey, Claudia Bank, Karen Bisschop, Thomas Blankers, Johannes Cairns, Enrico Sandro Colizzi, Davide Cusseddu, Michael M Desai, Bram van Dijk, Martijn Egas, Jacintha Ellers, Astrid T Groot, David G Heckel, Marcelle L Johnson, Ken Kraaijeveld, Joachim Krug, Werner K-G Daalman, Michael Lässig, Peter A Lind, Jeroen Meijer, Luke M Noble, Samir Okasha, Paul B Rainey, Daniel E Rozen, Shraddha Shitut, Sander J Tans, Olivier Tenaillon, Henrique Teotónio, J Arjan G M de Visser, Marcel E Visser, Renske M A Vroomans, Gijsbert D A Werner, Bregje Wertheim, Pleuni S Pennings
Towards evolutionary predictions: Current promises and challenges. Evolutionary applications 16 (1) (2022)
Meike T Wortel, Deepa Agashe, Susan F Bailey, Claudia Bank, Karen Bisschop, Thomas Blankers, Johannes Cairns, Enrico Sandro Colizzi, Davide Cusseddu, Michael M Desai, Bram van Dijk, Martijn Egas, Jacintha Ellers, Astrid T Groot, David G Heckel, Marcelle L Johnson, Ken Kraaijeveld, Joachim Krug, Werner K-G Daalman, Michael Lässig, Peter A Lind, Jeroen Meijer, Luke M Noble, Samir Okasha, Paul B Rainey, Daniel E Rozen, Shraddha Shitut, Sander J Tans, Olivier Tenaillon, Henrique Teotónio, J Arjan G M de Visser, Marcel E Visser, Renske M A Vroomans, Gijsbert D A Werner, Bregje Wertheim, Pleuni S Pennings
Towards evolutionary predictions: Current promises and challenges. Evolutionary applications 16 (1) (2022)
Rochelle-Jan Reyes, Nina Hosmane, Shasta Ihorn, Milo S Johnson, Anagha Kulkarni, Jennifer Nelson, Michael Savvides, Duc Ta, Ilmi Yoon, Pleuni S Pennings
Ten simple rules for designing and running a computing minor for bio/chem students. PLoS computational biology 18 (7) (2022)
Rochelle-Jan Reyes, Olivia Pham, Ryan Fergusson, Niquo Ceberio, Candace Clark, C Sarah Cohen, Megumi Fuse, Pleuni S Pennings
SCIP: a self-paced summer coding program creates community and increases coding confidence. bioRxiv : the preprint server for biology (2022)
Kaho H Tisthammer, Caroline Solis, Faye Orcales, Madu Nzerem, Ryan Winstead, Weiyan Dong, Jeffrey B Joy, Pleuni S Pennings
Assessing in vivo mutation frequencies and creating a high-resolution genome-wide map of fitness costs of Hepatitis C virus. PLoS genetics 18 (5) (2022)
Kaho H Tisthammer, Christopher Kline, Tara Rutledge, Collin R Diedrich, Sergio Ita, Philana Ling Lin, Zandrea Ambrose, Pleuni S Pennings
SIV Evolutionary Dynamics in Cynomolgus Macaques during SIV- Mycobacterium tuberculosis Co-Infection. Viruses 14 (1) (2021)
Alison F Feder, Kristin N Harper, Chanson J Brumme, Pleuni S Pennings
Understanding patterns of HIV multi-drug resistance through models of temporal and spatial drug heterogeneity. eLife 10 (2021)
Victoria R Caudill, Sarina Qin, Ryan Winstead, Jasmeen Kaur, Kaho Tisthammer, E Geo Pineda, Caroline Solis, Sarah Cobey, Trevor Bedford, Oana Carja, Rosalind M Eggo, Katia Koelle, Katrina Lythgoe, Roland Regoes, Scott Roy, Nicole Allen, Milo Aviles, Brittany A Baker, William Bauer, Shannel Bermudez, Corey Carlson, Edgar Castellanos, Francisca L Catalan, Angeline Katia Chemel, Jacob Elliot, Dwayne Evans, Natalie Fiutek, Emily Fryer, Samuel Melvin Goodfellow, Mordecai Hecht, Kellen Hopp, E Deshawn Hopson, Amirhossein Jaberi, Christen Kinney, Derek Lao, Adrienne Le, Jacky Lo, Alejandro G Lopez, Andrea López, Fernando G Lorenzo, Gordon T Luu, Andrew R Mahoney, Rebecca L Melton, Gabriela Do Nascimento, Anjani Pradhananga, Nicole S Rodrigues, Annie Shieh, Jasmine Sims, Rima Singh, Hasan Sulaeman, Ricky Thu, Krystal Tran, Livia Tran, Elizabeth J Winters, Albert Wong, Pleuni S Pennings
CpG-creating mutations are costly in many human viruses. Evolutionary ecology 34 (3) (2020)
Kadie-Ann Williams, Pleuni S Pennings
Drug Resistance Evolution in HIV in the Late 1990s: Hard Sweeps, Soft Sweeps, Clonal Interference and the Accumulation of Drug Resistance Mutations. G3 (Bethesda, Md.) 10 (4) (2020)
Maoz Gelbart, Sheri Harari, Ya'ara Ben-Ari, Talia Kustin, Dana Wolf, Michal Mandelboim, Orna Mor, Pleuni S Pennings, Adi Stern
Drivers of within-host genetic diversity in acute infections of viruses. PLoS pathogens 16 (11) (2020)
Alison F Feder, Pleuni S Pennings, Joachim Hermisson, Dmitri A Petrov
Evolutionary Dynamics in Structured Populations Under Strong Population Genetic Forces. G3 (Bethesda, Md.) 9 (10) (2019)
Melinda T Owens, Shannon B Seidel, Mike Wong, Travis E Bejines, Susanne Lietz, Joseph R Perez, Shangheng Sit, Zahur-Saleh Subedar, Gigi N Acker, Susan F Akana, Brad Balukjian, Hilary P Benton, J R Blair, Segal M Boaz, Katharyn E Boyer, Jason B Bram, Laura W Burrus, Dana T Byrd, Natalia Caporale, Edward J Carpenter, Yee-Hung Mark Chan, Lily Chen, Amy Chovnick, Diana S Chu, Bryan K Clarkson, Sara E Cooper, Catherine Creech, Karen D Crow, José R de la Torre, Wilfred F Denetclaw, Kathleen E Duncan, Amy S Edwards, Karen L Erickson, Megumi Fuse, Joseph J Gorga, Brinda Govindan, L Jeanette Green, Paul Z Hankamp, Holly E Harris, Zheng-Hui He, Stephen Ingalls, Peter D Ingmire, J Rebecca Jacobs, Mark Kamakea, Rhea R Kimpo, Jonathan D Knight, Sara K Krause, Lori E Krueger, Terrye L Light, Lance Lund, Leticia M Márquez-Magaña, Briana K McCarthy, Linda J McPheron, Vanessa C Miller-Sims, Christopher A Moffatt, Pamela C Muick, Paul H Nagami, Gloria L Nusse, Kristine M Okimura, Sally G Pasion, Robert Patterson, Pleuni S Pennings, Blake Riggs, Joseph Romeo, Scott W Roy, Tatiane Russo-Tait, Lisa M Schultheis, Lakshmikanta Sengupta, Rachel Small, Greg S Spicer, Jonathon H Stillman, Andrea Swei, Jennifer M Wade, Steven B Waters, Steven L Weinstein, Julia K Willsie, Diana W Wright, Colin D Harrison, Loretta A Kelley, Gloriana Trujillo, Carmen R Domingo, Jeffrey N Schinske, Kimberly D Tanner
Classroom sound can be used to classify teaching practices in college science courses. Proceedings of the National Academy of Sciences of the United States of America 114 (12) (2017)
Benjamin A Wilson, Pleuni S Pennings, Dmitri A Petrov
Soft Selective Sweeps in Evolutionary Rescue. Genetics 205 (4) (2017)
Stefany Moreno-Gamez, Alison L Hill, Daniel I S Rosenbloom, Dmitri A Petrov, Martin A Nowak, Pleuni S Pennings
Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance. Proceedings of the National Academy of Sciences of the United States of America 112 (22) (2015)

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Publication Activity (10 Years)

Top Topics

Top Venues

Pleuni S Pennings (Pleuni Pennings)