Rafael A Irizarry (Rafael Irizarry)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 11

Top Topics

Cognitive Impairment

Top Venues

Genome research

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Luli S Zou, Dylan M Cable, Irving A Barrera-Lopez, Tongtong Zhao, Evan Murray, Martin J Aryee, Fei Chen, Rafael A Irizarry
Detection of allele-specific expression in spatial transcriptomics with spASE. Genome biology 25 (1) (2024)
Phillip B Nicol, Danielle Paulson, Gege Qian, X Shirley Liu, Rafael A Irizarry, Avinash Das Sahu
Robust identification of perturbed cell types in single-cell RNA-seq data. Nature communications 15 (1) (2024)
Katie Maurer, Isabella N Grabski, Houot Roch, Satyen H Gohil, Shogo Miura, Robert A Redd, Haoxiang Lyu, Wesley S Lu, Yohei Arihara, Justin Budka, Mikaela McDonough, Michela Ansuinelli, Carol G Reynolds, Heather Jacene, Shuqiang Li, Kenneth J Livak, Jerome Ritz, Brodie Miles, Mike Mattie, Donna S Neuberg, Rafael A Irizarry, Philippe Armand, Catherine J Wu, Caron A Jacobson
Baseline Immune State and T-cell Clonal Kinetics are Associated with Durable Response to CAR-T Therapy in Large B-cell Lymphoma. Blood (2024)
Luli S Zou, Dylan M Cable, Irving A Barrera-Lopez, Tongtong Zhao, Evan Murray, Martin J Aryee, Fei Chen, Rafael A Irizarry
Detection of allele-specific expression in spatial transcriptomics with spASE. Genome biology 25 (1) (2024)
Isabella N Grabski, John Victor Heymach, Kenneth L Kehl, Edmund S Kopetz, Ken S Lau, Gregory J Riely, Deborah Schrag, Rona Yaeger, Rafael A Irizarry, Kevin M Haigis
Effects of KRAS genetic interactions on outcomes in cancers of the lung, pancreas, and colorectum. Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology (2023)
Isabella N Grabski, Kelly Street, Rafael A Irizarry
Significance analysis for clustering with single-cell RNA-sequencing data. Nature methods (2023)
Dylan M Cable, Evan Murray, Vignesh Shanmugam, Simon Zhang, Luli S Zou, Michael Diao, Haiqi Chen, Evan Z Macosko, Rafael A Irizarry, Fei Chen
Cell type-specific inference of differential expression in spatial transcriptomics. Nature methods 19 (9) (2022)
M Senthil Kumar, Eric V Slud, Christine Hehnly, Lijun Zhang, James Broach, Rafael A Irizarry, Steven J Schiff, Joseph N Paulson
Differential richness inference for 16S rRNA marker gene surveys. Genome biology 23 (1) (2022)
Isabella N Grabski, Rafael A Irizarry
A probabilistic gene expression barcode for annotation of cell types from single-cell RNA-seq data. Biostatistics (Oxford, England) 23 (4) (2022)
Dylan M Cable, Evan Murray, Luli S Zou, Aleksandrina Goeva, Evan Z Macosko, Fei Chen, Rafael A Irizarry
Robust decomposition of cell type mixtures in spatial transcriptomics. Nature biotechnology (2021)
Mingxiang Teng, Rafael A Irizarry
Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data. Genome research 27 (11) (2017)