Ran Friedman

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 37

Top Topics

Combination Therapy

Acute Myeloid Leukemia

Density Functional Theory

Tyrosine Kinase

Top Venues

Physical chemistry chemical physics : PCCP

The journal of physical chemistry. A

BMC bioinformatics

Chemphyschem : a European journal of chemical physics and physical chemistry

This page only lists publications with an associated author ORCID identifier.

Publications

Erik Lindahl, Erik Arvidsson, Ran Friedman
Trans vs. cis : a computational study of enasidenib resistance due to IDH2 mutations. Physical chemistry chemical physics : PCCP (2024)
Xuewei Xiong, Ran Friedman, Wei Wu, Peifeng Su
QM/MM-Based Energy Decomposition Analysis Method for Large Systems. The journal of physical chemistry. A 128 (18) (2024)
Erik Lindahl, Erik Arvidsson, Ran Friedman
Trans vs. cis : a computational study of enasidenib resistance due to IDH2 mutations. Physical chemistry chemical physics : PCCP 26 (27) (2024)
Xuewei Xiong, Ran Friedman, Wei Wu, Peifeng Su
QM/MM-Based Energy Decomposition Analysis Method for Large Systems. The journal of physical chemistry. A (2024)
Erik Lindahl, Erik Arvidsson, Ran Friedman
Trans vs. cis : a computational study of enasidenib resistance due to IDH2 mutations. Physical chemistry chemical physics : PCCP 26 (27) (2024)
Thales Souza Freire, Julio Zukerman-Schpector, Ran Friedman, Ignez Caracelli
Structural and thermodynamic characterization of allosteric transitions in human serum albumin with metadynamics simulations. Physical chemistry chemical physics : PCCP 26 (7) (2024)
Thales Souza Freire, Julio Zukerman-Schpector, Ran Friedman, Ignez Caracelli
Structural and thermodynamic characterization of allosteric transitions in human serum albumin with metadynamics simulations. Physical chemistry chemical physics : PCCP 26 (7) (2024)
Thales Souza Freire, Julio Zukerman-Schpector, Ran Friedman, Ignez Caracelli
Structural and thermodynamic characterization of allosteric transitions in human serum albumin with metadynamics simulations. Physical chemistry chemical physics : PCCP (2024)
Wijitra Meelua, Tanchanok Wanjai, Natechanok Thinkumrob, Ran Friedman, Jitrayut Jitonnom
Multiscale QM/MM Simulations Identify the Roles of Asp239 and 1-OH···Nucleophile in Transition State Stabilization in Arabidopsis thaliana Cell-Wall Invertase 1. Journal of chemical information and modeling (2023)
Thales Souza Freire, Ignez Caracelli, Julio Zukerman-Schpector, Ran Friedman
Resistance to a tyrosine kinase inhibitor mediated by changes to the conformation space of the kinase. Physical chemistry chemical physics : PCCP 25 (8) (2023)
Thales Souza Freire, Ignez Caracelli, Julio Zukerman-Schpector, Ran Friedman
Resistance to a tyrosine kinase inhibitor mediated by changes to the conformation space of the kinase. Physical chemistry chemical physics : PCCP (2023)
Thales Souza Freire, Ignez Caracelli, Julio Zukerman-Schpector, Ran Friedman
Resistance to a tyrosine kinase inhibitor mediated by changes to the conformation space of the kinase. Physical chemistry chemical physics : PCCP 25 (8) (2023)
Yuan Xu, Shu Zhang, Erik Lindahl, Ran Friedman, Wei Wu, Peifeng Su
A general tight-binding based energy decomposition analysis scheme for intermolecular interactions in large molecules. The Journal of chemical physics 157 (3) (2022)
Luisa Moretto, Marko Ušaj, Oleg S Matusovsky, Dilson Etcheverry Rassier, Ran Friedman, Alf Månsson
Multistep orthophosphate release tunes actomyosin energy transduction. Nature communications 13 (1) (2022)
Ran Friedman
Estimating the Gibbs Hydration Energies of Actinium and Trans-Plutonium Actinides. Chemphyschem : a European journal of chemical physics and physical chemistry (2022)
Baswanth Oruganti, Ran Friedman
Activation of Abl1 Kinase Explored Using Well-Tempered Metadynamics Simulations on an Essential Dynamics Sampled Path. Journal of chemical theory and computation 17 (11) (2021)
Ran Friedman
Preferential Binding of Lanthanides to Methanol Dehydrogenase Evaluated with Density Functional Theory. The journal of physical chemistry. B 125 (9) (2021)
Jingmei Yang, H Jonathan G Lindström, Ran Friedman
Combating drug resistance in acute myeloid leukaemia by drug rotations: the effects of quizartinib and pexidartinib. Cancer cell international 21 (1) (2021)
María José Dávila-Rodríguez, Thales Souza Freire, Erik Lindahl, Ignez Caracelli, Julio Zukerman-Schpector, Ran Friedman
Is breaking of a hydrogen bond enough to lead to drug resistance? Chemical communications (Cambridge, England) 56 (49) (2021)
H Jonathan G Lindström, Ran Friedman
Inferring time-dependent population growth rates in cell cultures undergoing adaptation. BMC bioinformatics 21 (1) (2020)
Antoine Buetti-Dinh, Malte Herold, Stephan Christel, Mohamed El Hajjami, Francesco Delogu, Olga Ilie, Sören Bellenberg, Paul Wilmes, Ansgar Poetsch, Wolfgang Sand, Mario Vera, Igor V Pivkin, Ran Friedman, Mark Dopson
Reverse engineering directed gene regulatory networks from transcriptomics and proteomics data of biomining bacterial communities with approximate Bayesian computation and steady-state signalling simulations. BMC bioinformatics 21 (1) (2020)
Guido Todde, Ran Friedman
Pattern and Dynamics of FLT3 Duplications. Journal of chemical information and modeling 60 (8) (2020)
Panagiota S Georgoulia, Sinisa Bjelic, Ran Friedman
Deciphering the molecular mechanism of FLT3 resistance mutations. The FEBS journal 287 (15) (2020)
H Jonathan G Lindström, Astrid S de Wijn, Ran Friedman
Stochastic modelling of tyrosine kinase inhibitor rotation therapy in chronic myeloid leukaemia. BMC cancer 19 (1) (2019)
Guido Todde, Ran Friedman
Activation and Inactivation of the FLT3 Kinase: Pathway Intermediates and the Free Energy of Transition. The journal of physical chemistry. B 123 (26) (2019)
Ran Friedman
Specific Ion and Concentration Effects in Acetate Solutions with Na+ , K+ and Cs. Chemphyschem : a European journal of chemical physics and physical chemistry 20 (8) (2019)
Ran Friedman
Membrane-Ion Interactions. The Journal of membrane biology 251 (3) (2018)
Emma Ahlstrand, Julio Zukerman-Schpector, Ran Friedman
Computer simulations of alkali-acetate solutions: Accuracy of the forcefields in difference concentrations. The Journal of chemical physics 147 (19) (2018)
Björn C G Karlsson, Ran Friedman
Author Correction: Dilution of whisky - the molecular perspective. Scientific reports 8 (1) (2018)
Ran Friedman, Syma Khalid, Camilo Aponte-Santamaría, Elena Arutyunova, Marlon Becker, Kevin J Boyd, Mikkel Christensen, João T S Coimbra, Simona Concilio, Csaba Daday, Floris J van Eerden, Pedro A Fernandes, Frauke Gräter, Davit Hakobyan, Andreas Heuer, Konstantina Karathanou, Fabian Keller, M Joanne Lemieux, Siewert J Marrink, Eric R May, Antara Mazumdar, Richard Naftalin, Mónica Pickholz, Stefano Piotto, Peter Pohl, Peter Quinn, Maria J Ramos, Birgit Schiøtt, Durba Sengupta, Lucia Sessa, Stefano Vanni, Talia Zeppelin, Valeria Zoni, Ana-Nicoleta Bondar, Carmen Domene
Understanding Conformational Dynamics of Complex Lipid Mixtures Relevant to Biology. The Journal of membrane biology 251 (5-6) (2018)
Emma Ahlstrand, Antoine Buetti-Dinh, Ran Friedman
An interactive computer lab of the galvanic cell for students in biochemistry. Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology 46 (1) (2017)
Ran Friedman
The molecular mechanism behind resistance of the kinase FLT3 to the inhibitor quizartinib. Proteins 85 (11) (2017)
Emma Ahlstrand, Kersti Hermansson, Ran Friedman
Interaction Energies in Complexes of Zn and Amino Acids: A Comparison of Ab Initio and Force Field Based Calculations. The journal of physical chemistry. A 121 (13) (2017)
Björn C G Karlsson, Ran Friedman
Dilution of whisky - the molecular perspective. Scientific reports 7 (1) (2017)
Stella Hernandez Maganhi, Patrizia Jensen, Ignez Caracelli, Julio Zukerman Schpector, Stefan Fröhling, Ran Friedman
Palbociclib can overcome mutations in cyclin dependent kinase 6 that break hydrogen bonds between the drug and the protein. Protein science : a publication of the Protein Society 26 (4) (2017)
Luis Felipe Pineda De Castro, Mark Dopson, Ran Friedman
Biological Membranes in Extreme Conditions: Simulations of Anionic Archaeal Tetraether Lipid Membranes. PloS one 11 (5) (2016)
Antoine Buetti-Dinh, Thomas O'Hare, Ran Friedman
Sensitivity Analysis of the NPM-ALK Signalling Network Reveals Important Pathways for Anaplastic Large Cell Lymphoma Combination Therapy. PloS one 11 (9) (2016)