Rhonda Bacher

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 25

Top Venues

bioRxiv : the preprint server for biology

Briefings in bioinformatics

Nature computational science

PloS one

University of Florida

University of Wisconsin-Madison (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Florida Jan 01 2018

United States

Assistant Professor :: Biostatistics

Education History

University of Wisconsin-Madison Sep 01 2012 - Jun 30 2017

United States

PHD :: Statistics

Publications

Matthew E Brown, Puchong Thirawatananond, Leeana D Peters, Elizabeth J Kern, Sonali Vijay, Lindsey K Sachs, Amanda L Posgai, Maigan A Brusko, Melanie R Shapiro, Clayton E Mathews, Rhonda Bacher, Todd M Brusko
Inhibition of CD226 Co-Stimulation Suppresses Diabetes Development in the NOD Mouse by Augmenting Tregs and Diminishing Effector T Cell Function. bioRxiv : the preprint server for biology (2024)
Luer Zhong, Rhonda Bacher
Leveraging remeasured samples in biomedical studies. Nature computational science 3 (8) (2024)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. Briefings in bioinformatics 25 (3) (2024)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. Briefings in bioinformatics 25 (3) (2024)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. Briefings in bioinformatics 25 (3) (2024)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. Briefings in bioinformatics 25 (3) (2024)
Luer Zhong, Rhonda Bacher
Leveraging remeasured samples in biomedical studies. Nature computational science 3 (8) (2024)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. Briefings in bioinformatics 25 (3) (2024)
Matthew E Brown, Puchong Thirawatananond, Leeana D Peters, Elizabeth J Kern, Sonali Vijay, Lindsey K Sachs, Amanda L Posgai, Maigan A Brusko, Melanie R Shapiro, Clayton E Mathews, Rhonda Bacher, Todd M Brusko
Inhibition of CD226 Co-Stimulation Suppresses Diabetes Development in the NOD Mouse by Augmenting Tregs and Diminishing Effector T Cell Function. bioRxiv : the preprint server for biology (2024)
Jack R Leary, Rhonda Bacher
Interpretable trajectory inference with single-cell Linear Adaptive Negative-binomial Expression (scLANE) testing. bioRxiv : the preprint server for biology (2023)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. bioRxiv : the preprint server for biology (2023)
Jack R Leary, Rhonda Bacher
Interpretable trajectory inference with single-cell Linear Adaptive Negative-binomial Expression (scLANE) testing. bioRxiv : the preprint server for biology (2023)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. bioRxiv : the preprint server for biology (2023)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. bioRxiv : the preprint server for biology (2023)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. bioRxiv : the preprint server for biology (2023)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. bioRxiv : the preprint server for biology (2023)
Jack R Leary, Rhonda Bacher
Interpretable trajectory inference with single-cell Linear Adaptive Negative-binomial Expression (scLANE) testing. bioRxiv : the preprint server for biology (2023)
Jack R Leary, Rhonda Bacher
Interpretable trajectory inference with single-cell Linear Adaptive Negative-binomial Expression (scLANE) testing. bioRxiv : the preprint server for biology (2023)
Xiaoru Dong, Jack R Leary, Chuanhao Yang, Maigan A Brusko, Todd M Brusko, Rhonda Bacher
Data-driven selection of analysis decisions in single-cell RNA-seq trajectory inference. bioRxiv : the preprint server for biology (2023)
Jack R Leary, Rhonda Bacher
Interpretable trajectory inference with single-cell Linear Adaptive Negative-binomial Expression (scLANE) testing. bioRxiv : the preprint server for biology (2023)
Rhonda Bacher, Li-Fang Chu, Cara Argus, Jennifer M Bolin, Parker Knight, James A Thomson, Ron Stewart, Christina Kendziorski
Enhancing biological signals and detection rates in single-cell RNA-seq experiments with cDNA library equalization. Nucleic acids research (2021)
Myung-Chul Kim, Nicholas Borcherding, Kawther Khalid Ahmed, Andrew P Voigt, Ajaykumar Vishwakarma, Ryan Kolb, Paige N Kluz, Gaurav Pandey, Umasankar De, Theodore T Drashansky, Eric Y Helm, Xin Zhang, Katherine N Gibson-Corley, Julia Klesney-Tait, Yuwen Zhu, Jinglu Lu, Jinsong Lu, Xian Huang, Hongrui Xiang, Jinke Cheng, Dongyang Wang, Zheng Wang, Jian Tang, Jiajia Hu, Zhengting Wang, Hua Liu, Mingjia Li, Haoyang Zhuang, Dorina Avram, Daohong Zhou, Rhonda Bacher, Song Guo Zheng, Xuefeng Wu, Yousef Zakharia, Weizhou Zhang
CD177 modulates the function and homeostasis of tumor-infiltrating regulatory T cells. Nature communications 12 (1) (2021)
Morten Seirup, Li-Fang Chu, Srikumar Sengupta, Ning Leng, Hadley Browder, Kevin Kapadia, Christina M Shafer, Bret Duffin, Angela L Elwell, Jennifer M Bolin, Scott Swanson, Ron Stewart, Christina Kendziorski, James A Thomson, Rhonda Bacher
Reproducibility across single-cell RNA-seq protocols for spatial ordering analysis. PloS one 15 (9) (2020)
Christopher Barry, Matthew T Schmitz, Cara Argus, Jennifer M Bolin, Mitchell D Probasco, Ning Leng, Bret M Duffin, John Steill, Scott A Swanson, Brian E McIntosh, Ron Stewart, Christina Kendziorski, James A Thomson, Rhonda Bacher
Automated minute scale RNA-seq of pluripotent stem cell differentiation reveals early divergence of human and mouse gene expression kinetics. PLoS computational biology 15 (12) (2019)
Rhonda Bacher, Li-Fang Chu, Ning Leng, Audrey P Gasch, James A Thomson, Ron M Stewart, Michael A Newton, Christina Kendziorski
SCnorm: robust normalization of single-cell RNA-seq data. Nature methods 14 (6) (2017)

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Publication Activity (10 Years)

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Rhonda Bacher