Denis Schapiro

Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 19

Top Topics

Optical Coherence Tomography

Top Venues

Nature medicine

Nature genetics

This page only lists publications with an associated author ORCID identifier.

Publications

Geethika Arekatla, Stavroula Skylaki, David Corredor Suarez, Hartland Warren Jackson, Denis Schapiro, Stefanie Engler, Markus Auler, Germán Camargo Ortega, Simon Hastreiter, Andreas Reimann, Dirk Loeffler, Bernd Bodenmiller, Timm Schroeder
Identification of an embryonic differentiation stage marked by Sox1 and FoxA2 co-expression using combined cell tracking and high dimensional protein imaging. Nature communications 15 (1) (2024)
Nikki Bialy, Frank Alber, Brenda J Andrews, Michael Angelo, Brian J Beliveau, Lacramioara Bintu, Alistair Nicol Boettiger, Ulrike Boehm, Claire M Brown, Mahmoud Bukar Maina, James J Chambers, Beth A Cimini, Kevin W Eliceiri, Rachel Errington, Orestis Faklaris, Nathalie Gaudreault, Ronald N Germain, Wojtek J Goscinski, David Grünwald, Michael Halter, Dorit Hanein, John W Hickey, Judith Lacoste, Alex Laude, Emma Lundberg, Jian Ma, Leonel Malacrida, Josh Moore, Glyn Nelson, Elizabeth Kathleen Neumann, Roland Nitschke, Shuichi Onami, Jaime A Pimentel, Anne L Plant, Andrea J Radtke, Bikash Sabata, Denis Schapiro, Johannes Schöneberg, Jeffrey M Spraggins, Damir Sudar, Wouter-Michiel Vierdag, Niels Volkmann, Carolina Wählby, Siyuan Steven Wang, Ziv Rafael Yaniv, Caterina Strambio-De-Castilla
Harmonizing the Generation and Pre-publication Stewardship of FAIR Image data. ArXiv (2024)
Miguel A Ibarra-Arellano, Lindsay A Caprio, Aroj Hada, Niklas Stotzem, Luke L Cai, Shivem B Shah, Johannes C Melms, Florian Wünneman, Benjamin Izar, Denis Schapiro
micronuclAI: Automated quantification of micronuclei for assessment of chromosomal instability. bioRxiv : the preprint server for biology (2024)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
Ethan A G Baker, Denis Schapiro, Bianca Dumitrascu, Sanja Vickovic, Aviv Regev
In silico tissue generation and power analysis for spatial omics. Nature methods 20 (3) (2023)
William L Hwang, Karthik A Jagadeesh, Jimmy A Guo, Hannah I Hoffman, Payman Yadollahpour, Jason W Reeves, Rahul Mohan, Eugene Drokhlyansky, Nicholas Van Wittenberghe, Orr Ashenberg, Samouil L Farhi, Denis Schapiro, Prajan Divakar, Eric M Miller, Daniel R Zollinger, George Eng, Jason M Schenkel, Jennifer Su, Carina Shiau, Patrick Yu, William A Freed-Pastor, Domenic Abbondanza, Arnav Mehta, Joshua Gould, Conner Lambden, Caroline B M Porter, Alexander Tsankov, Danielle Dionne, Julia Waldman, Michael S Cuoco, Lan Nguyen, Toni Marie Delorey, Devan Phillips, Jaimie L Barth, Marina Kem, Clifton Rodrigues, Debora Ciprani, Jorge Roldan, Piotr Zelga, Vjola Jorgji, Jonathan H Chen, Zackery Ely, Daniel Zhao, Kit Fuhrman, Robin Fropf, Joseph M Beechem, Jay S Loeffler, David P Ryan, Colin D Weekes, Cristina R Ferrone, Motaz Qadan, Martin J Aryee, Rakesh K Jain, Donna S Neuberg, Jennifer Y Wo, Theodore S Hong, Ramnik Xavier, Andrew J Aguirre, Orit Rozenblatt-Rosen, Mari A Mino-Kenudson, Carlos Fernandez-Del Castillo, Andrew S Liss, David Tsai Ting, Tyler Jacks, Aviv Regev
Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment. Nature genetics 54 (8) (2022)
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M Reynolds, Yu-An Chen, Damir Sudar, Yubin Xie, Jeremy L Muhlich, Raquel Arias-Camison, Sarah Arena, Adam J Taylor, Milen Nikolov, Madison Tyler, Jia-Ren Lin, Erik A Burlingame, null null, Young Hwan Chang, Samouil L Farhi, Vesteinn Thorsson, Nithya Venkatamohan, Julia L Drewes, Dana Pe'er, David A Gutman, Markus D Herrmann, Nils Gehlenborg, Peter Bankhead, Joseph T Roland, John M Herndon, Michael Paul Snyder, R Michael Angelo, Garry Nolan, Jason R Swedlow, Nikolaus Schultz, Daniel T Merrick, Sarah A Mazzili, Ethan Cerami, Scott J Rodig, Sandro Santagata, Peter Karl Sorger
MITI minimum information guidelines for highly multiplexed tissue images. Nature methods 19 (3) (2022)
Sanja Vickovic, Denis Schapiro, Konstantin Carlberg, Britta Lötstedt, Ludvig Larsson, Franziska Hildebrandt, Marina Korotkova, Aase H Hensvold, Anca I Catrina, Peter Karl Sorger, Vivianne Malmström, Aviv Regev, Patrik L Ståhl
Three-dimensional spatial transcriptomics uncovers cell type localizations in the human rheumatoid arthritis synovium. Communications biology 5 (1) (2022)
Eran Hodis, Elena Torlai Triglia, John Y H Kwon, Tommaso Biancalani, Labib R Zakka, Saurabh Parkar, Jan-Christian Hütter, Lorenzo Buffoni, Toni Marie Delorey, Devan Phillips, Danielle Dionne, Lan T Nguyen, Denis Schapiro, Zoltan Maliga, Connor A Jacobson, Ayal Hendel, Orit Rozenblatt-Rosen, Martin C Mihm, Levi A Garraway, Aviv Regev
Stepwise-edited, human melanoma models reveal mutations' effect on tumor and microenvironment. Science (New York, N.Y.) 376 (6592) (2022)
Christoph Kuppe, Ricardo Omar Ramirez Flores, Zhijian Li, Sikander Hayat, Rebecca T Levinson, Xian Liao, Monica T Hannani, Jovan Tanevski, Florian Wünnemann, James S Nagai, Maurice Halder, David Schumacher, Sylvia Menzel, Gideon Schäfer, Konrad Hoeft, Mingbo Cheng, Susanne Ziegler, Xiaoting Zhang, Fabian Peisker, Nadine Kaesler, Turgay Saritas, Yaoxian Xu, Astrid Kassner, Jan Gummert, Michiel Morshuis, Junedh M Amrute, Rogier J A Veltrop, Peter Boor, Karin Klingel, Linda W Van Laake, Aryan Vink, Remco M Hoogenboezem, Eric M J Bindels, Leon J Schurgers, Susanne Sattler, Denis Schapiro, Rebekka K Schneider, Kory J Lavine, Hendrik Milting, Ivan G Costa, Julio Saez-Rodriguez, Rafael Kramann
Spatial multi-omic map of human myocardial infarction. Nature 608 (7924) (2022)
David Liu, Jia-Ren Lin, Emily J Robitschek, Gyulnara G Kasumova, Alex Heyde, Alvin Shi, Adam Kraya, Gao Zhang, Tabea Moll, Dennie T Frederick, Yu-An Chen, Shu Wang, Denis Schapiro, Li-Lun Ho, Kevin Bi, Avinash Sahu, Shaolin Mei, Benchun Miao, Tatyana Sharova, Christopher Alvarez-Breckenridge, Jackson H Stocking, Tommy Kim, Riley Fadden, Donald Lawrence, Mai P Hoang, Daniel P Cahill, Mohsen Malehmir, Martin A Nowak, Priscilla Kaliopi Brastianos, Christine G Lian, Eytan Ruppin, Benjamin Izar, Meenhard Herylyn, Eliezer Van Allen, Katherine L Nathanson, Keith T Flaherty, Ryan J Sullivan, Manolis Kellis, Peter Karl Sorger, Genevieve Marie Boland
Evolution of delayed resistance to immunotherapy in a melanoma responder. Nature medicine 27 (6) (2021)
Salma Abdel Magid, Won-Dong Jang, Denis Schapiro, Donglai Wei, James Tompkin, Peter Karl Sorger, Hanspeter Pfister
Channel Embedding for Informative Protein Identification from Highly Multiplexed Images. Medical image computing and computer-assisted intervention : MICCAI ... International Conference on Medical Image Computing and Computer-Assisted Intervention 12265 (2020)
Denis Schapiro, Hartland W Jackson, Swetha Raghuraman, Jana R Fischer, Vito R T Zanotelli, Daniel Schulz, Charlotte Giesen, Raúl Catena, Zsuzsanna Varga, Bernd Bodenmiller
histoCAT: analysis of cell phenotypes and interactions in multiplex image cytometry data. Nature methods 14 (9) (2017)