D Peter Tieleman (D P Tieleman)

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 41

Top Topics

Molecular Dynamics

Top Venues

The journal of physical chemistry. B

Journal of chemical theory and computation

Communications biology

Langmuir : the ACS journal of surfaces and colloids

This page only lists publications with an associated author ORCID identifier.

Publications

Elio A Cino, D Peter Tieleman
Curvature Footprints of Transmembrane Proteins in Simulations with the Martini Force Field. The journal of physical chemistry. B 128 (25) (2024)
Yu Cao, Jin Zhu, Jian-Long Kou, D Peter Tieleman, Qing Liang
Unveiling Interactions of Tumor-Targeting Nanoparticles with Lipid Bilayers Using a Titratable Martini Model. Journal of chemical theory and computation (2024)
Elio A Cino, D Peter Tieleman
Curvature Footprints of Transmembrane Proteins in Simulations with the Martini Force Field. The journal of physical chemistry. B (2024)
Elio A Cino, D Peter Tieleman
Curvature Footprints of Transmembrane Proteins in Simulations with the Martini Force Field. The journal of physical chemistry. B 128 (25) (2024)
Elio A Cino, D Peter Tieleman
Curvature Footprints of Transmembrane Proteins in Simulations with the Martini Force Field. The journal of physical chemistry. B 128 (25) (2024)
Yu Cao, Jin Zhu, Jian-Long Kou, D Peter Tieleman, Qing Liang
Unveiling Interactions of Tumor-Targeting Nanoparticles with Lipid Bilayers Using a Titratable Martini Model. Journal of chemical theory and computation 20 (9) (2024)
Beibei Wang, D Peter Tieleman
Release of nanodiscs from charged nano-droplets in the electrospray ionization revealed by molecular dynamics simulations. Communications chemistry 6 (1) (2023)
Panagiotis I Koukos, Sepehr Dehghani-Ghahnaviyeh, Camilo Velez-Vega, John Manchester, D Peter Tieleman, José S Duca, Paulo Cesar Telles de Souza, Zoe Cournia
Martini 3 Force Field Parameters for Protein Lipidation Post-Translational Modifications. Journal of chemical theory and computation (2023)
Luís Borges-Araújo, Ana C Borges-Araújo, Tugba Nur Ozturk, Daniel P Ramirez-Echemendia, Balázs Fábián, Timothy S Carpenter, Sebastian Thallmair, Jonathan Barnoud, Helgi I Ingólfsson, Gerhard Hummer, D Peter Tieleman, Siewert-Jan Marrink, Paulo Cesar Telles de Souza, Manuel N Melo
Martini 3 Coarse-Grained Force Field for Cholesterol. Journal of chemical theory and computation (2023)
Beibei Wang, D Peter Tieleman
Release of nanodiscs from charged nano-droplets in the electrospray ionization revealed by molecular dynamics simulations. Communications chemistry 6 (1) (2023)
Briana M Bohannon, Jessica J Jowais, Leif Nyberg, Vanessa Olivier-Meo, Valentina Corradi, D Peter Tieleman, Sara I Liin, Hans Peter Larsson
Mechanistic insights into robust cardiac I Ks potassium channel activation by aromatic polyunsaturated fatty acid analogues. eLife 12 (2023)
Hristina R Zhekova, Jiansen Jiang, Weiguang Wang, Kirill Tsirulnikov, Gülru Kayık, Hanif Muhammad Khan, Rustam Azimov, Natalia Abuladze, Liyo Kao, Debbie Newman, Sergei Yu Noskov, D Peter Tieleman, Z Hong Zhou, Alexander Pushkin, Ira Kurtz
CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations. Communications biology 5 (1) (2022)
Hristina R Zhekova, Jiansen Jiang, Weiguang Wang, Kirill Tsirulnikov, Gülru Kayık, Hanif Muhammad Khan, Rustam Azimov, Natalia Abuladze, Liyo Kao, Debbie Newman, Sergei Yu Noskov, D Peter Tieleman, Z Hong Zhou, Alexander Pushkin, Ira Kurtz
CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations. Communications biology 5 (1) (2022)
Hristina R Zhekova, Jiansen Jiang, Weiguang Wang, Kirill Tsirulnikov, Gülru Kayık, Hanif Muhammad Khan, Rustam Azimov, Natalia Abuladze, Liyo Kao, Debbie Newman, Sergei Yu Noskov, D Peter Tieleman, Z Hong Zhou, Alexander Pushkin, Ira Kurtz
CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations. Communications biology 5 (1) (2022)
Valentina Corradi, Anna N Bukiya, Williams E Miranda, Meng Cui, Leigh D Plant, Diomedes E Logothetis, D Peter Tieleman, Sergei Yu Noskov, Avia Rosenhouse-Dantsker
A molecular switch controls the impact of cholesterol on a Kir channel. Proceedings of the National Academy of Sciences of the United States of America 119 (13) (2022)
Hristina R Zhekova, Jiansen Jiang, Weiguang Wang, Kirill Tsirulnikov, Gülru Kayık, Hanif Muhammad Khan, Rustam Azimov, Natalia Abuladze, Liyo Kao, Debbie Newman, Sergei Yu Noskov, D Peter Tieleman, Z Hong Zhou, Alexander Pushkin, Ira Kurtz
CryoEM structures of anion exchanger 1 capture multiple states of inward- and outward-facing conformations. Communications biology 5 (1) (2022)
Jinyu Chen, D Peter Tieleman, Qing Liang
Effects of Lid Domain Structural Changes on the Interactions between Peripheral Myelin Protein 2 and a Lipid Bilayer. The journal of physical chemistry letters 13 (4) (2022)
Mohsen Ramezanpour, D Peter Tieleman
Computational Insights into the Role of Cholesterol in Inverted Hexagonal Phase Stabilization and Endosomal Drug Release. Langmuir : the ACS journal of surfaces and colloids 38 (24) (2022)
Ruijie D Teo, D Peter Tieleman
Evaluation of all-atom force fields in viral capsid simulations and properties. RSC advances 12 (1) (2021)
Elio A Cino, Mariia Borbuliak, Shangnong Hu, D Peter Tieleman
Lipid distributions and transleaflet cholesterol migration near heterogeneous surfaces in asymmetric bilayers. Faraday discussions (2021)
Besian I Sejdiu, D Peter Tieleman
ProLint: a web-based framework for the automated data analysis and visualization of lipid-protein interactions. Nucleic acids research 49 (W1) (2021)
Williams E Miranda, Jiqing Guo, Haydee Mesa-Galloso, Valentina Corradi, James P Lees-Miller, D Peter Tieleman, Henry J Duff, Sergei Yu Noskov
Lipid regulation of hERG1 channel function. Nature communications 12 (1) (2021)
Paulo Cesar Telles de Souza, Riccardo Alessandri, Jonathan Barnoud, Sebastian Thallmair, Ignacio Faustino, Fabian Grünewald, Ilias Patmanidis, Haleh Abdizadeh, Bart Marlon Herwig Bruininks, Tsjerk A Wassenaar, Peter C Kroon, Josef Melcr, Vincent Nieto, Valentina Corradi, Hanif M Khan, Jan Domański, Matti Javanainen, Hector Martinez-Seara, Nathalie Reuter, Robert B Best, Ilpo Vattulainen, Luca Monticelli, Xavier Periole, D Peter Tieleman, Alex H de Vries, Siewert J Marrink
Martini 3: a general purpose force field for coarse-grained molecular dynamics. Nature methods 18 (4) (2021)
Beibei Wang, Changqing Zhong, D Peter Tieleman
Supramolecular Organization of SARS-CoV and SARS-CoV-2 Virions Revealed by Coarse-Grained Models of Intact Virus Envelopes. Journal of chemical information and modeling 62 (1) (2021)
Yevhen K Cherniavskyi, Arman Fathizadeh, Ron Elber, D Peter Tieleman
Computer simulations of a heterogeneous membrane with enhanced sampling techniques. The Journal of chemical physics 153 (14) (2021)
Samira Yazdi, Johan Nikesjö, Williams Miranda, Valentina Corradi, D Peter Tieleman, Sergei Yu Noskov, Hans Peter Larsson, Sara I Liin
Identification of PUFA interaction sites on the cardiac potassium channel KCNQ1. The Journal of general physiology 153 (6) (2021)
Ruijie D Teo, D Peter Tieleman
Modulation of Phospholipid Bilayer Properties by Simvastatin. The journal of physical chemistry. B 125 (30) (2021)
Ryan W Loney, Sergio Panzuela, Jespar Chen, Zimo Yang, Jonathan R Fritz, Zachary Dell, Valentina Corradi, Kamlesh Kumar, D Peter Tieleman, Stephen B Hall, Stephanie A Tristram-Nagle
Location of the Hydrophobic Surfactant Proteins, SP-B and SP-C, in Fluid-Phase Bilayers. The journal of physical chemistry. B 124 (31) (2020)
Yapan Jin, Qing Liang, D Peter Tieleman
Interactions between Band 3 Anion Exchanger and Lipid Nanodomains in Ternary Lipid Bilayers: Atomistic Simulations. The journal of physical chemistry. B 124 (15) (2020)
M Ramezanpour, M L Schmidt, B Y M Bashe, J R Pruim, M L Link, Pieter R Cullis, Paul E Harper, Jenifer L Thewalt, D Peter Tieleman
Structural Properties of Inverted Hexagonal Phase: A Hybrid Computational and Experimental Approach. Langmuir : the ACS journal of surfaces and colloids 36 (24) (2020)
Luping Ou, Valentina Corradi, D Peter Tieleman, Qing Liang
Atomistic Simulations on Interactions between Amphiphilic Janus Nanoparticles and Lipid Bilayers: Effects of Lipid Ordering and Leaflet Asymmetry. The journal of physical chemistry. B 124 (22) (2020)
Christoph Thomas, Stephen G Aller, Konstantinos Beis, Elisabeth P Carpenter, Geoffrey Chang, Lei Chen, Elie Dassa, Michael Dean, Franck Duong Van Hoa, Damian Ekiert, Robert Ford, Rachelle Gaudet, Xin Gong, I Barry Holland, Yihua Huang, Daniel K Kahne, Hiroaki Kato, Vassilis Koronakis, Christopher M Koth, Youngsook Lee, Oded Lewinson, Roland Lill, Enrico Martinoia, Satoshi Murakami, Heather W Pinkett, Bert Poolman, Daniel Rosenbaum, Balazs Sarkadi, Lutz Schmitt, Erwin Schneider, Yigong Shi, Show-Ling Shyng, Dirk Jan Slotboom, Emad Tajkhorshid, D Peter Tieleman, Kazumitsu Ueda, András Váradi, Po-Chao Wen, Nieng Yan, Peng Zhang, Hongjin Zheng, Jochen Zimmer, Robert Tampé
Structural and functional diversity calls for a new classification of ABC transporters. FEBS letters 594 (23) (2020)
Ruo-Xu Gu, Svetlana Baoukina, D Peter Tieleman
Phase Separation in Atomistic Simulations of Model Membranes. Journal of the American Chemical Society 142 (6) (2020)
Sergio Panzuela, D Peter Tieleman, L Mederos, E Velasco
Molecular Ordering in Lipid Monolayers: An Atomistic Simulation. Langmuir : the ACS journal of surfaces and colloids 35 (42) (2019)
Sanam Shafaattalab, Alison Yueh Li, Eric Lin, Charles M Stevens, Laura J Dewar, Francis C Lynn, Shubhayan Sanatani, Zachary W M Laksman, Ryan D Morin, Filip Van Petegem, Leif Hove-Madsen, D Peter Tieleman, Jonathan P Davis, Glen F Tibbits
In vitro analyses of suspected arrhythmogenic thin filament variants as a cause of sudden cardiac death in infants. Proceedings of the National Academy of Sciences of the United States of America 116 (14) (2019)
Munirah S Abd Rahim, Yevhen K Cherniavskyi, D Peter Tieleman, Sonja A Dames
NMR- and MD simulation-based structural characterization of the membrane-associating FATC domain of ataxia telangiectasia mutated. The Journal of biological chemistry 294 (17) (2019)
Ruo-Xu Gu, Svetlana Baoukina, D Peter Tieleman
Cholesterol Flip-Flop in Heterogeneous Membranes. Journal of chemical theory and computation 15 (3) (2019)
Valentina Corradi, Besian I Sejdiu, Haydee Mesa-Galloso, Haleh Abdizadeh, Sergei Yu Noskov, Siewert-Jan Marrink, D Peter Tieleman
Emerging Diversity in Lipid-Protein Interactions. Chemical reviews 119 (9) (2019)
Tracy A Caldwell, Svetlana Baoukina, Ashton T Brock, Ryan C Oliver, Kyle T Root, Joanna K Krueger, Kerney Jebrell Glover, D Peter Tieleman, Linda Columbus
Low- q Bicelles Are Mixed Micelles. The journal of physical chemistry letters 9 (15) (2018)
Estefania Barreto-Ojeda, Valentina Corradi, Ruo-Xu Gu, D Peter Tieleman
Coarse-grained molecular dynamics simulations reveal lipid access pathways in P-glycoprotein. The Journal of general physiology 150 (3) (2018)
Yoav Atsmon-Raz, D Peter Tieleman
Parameterization of Palmitoylated Cysteine, Farnesylated Cysteine, Geranylgeranylated Cysteine, and Myristoylated Glycine for the Martini Force Field. The journal of physical chemistry. B 121 (49) (2017)