Ronald M Levy (Ronald Levy)

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 44

Top Venues

The journal of physical chemistry. B

eLife

bioRxiv : the preprint server for biology

Journal of chemical theory and computation

Temple University

Harvard University (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Temple University Jan 01 2014

United States

Laura Carnell Professor :: Chemistry

Education History

Harvard University

United States

PHD :: Program in Biophysics

Publications

Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. Nature communications 15 (1) (2024)
Abhishek Thakur, Joan Gizzio, Ronald M Levy
Potts Hamiltonian Models and Molecular Dynamics Free Energy Simulations for Predicting the Impact of Mutations on Protein Kinase Stability. The journal of physical chemistry. B 128 (7) (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. Nature communications 15 (1) (2024)
Abhishek Thakur, Joan Gizzio, Ronald M Levy
Potts Hamiltonian Models and Molecular Dynamics Free Energy Simulations for Predicting the Impact of Mutations on Protein Kinase Stability. The journal of physical chemistry. B 128 (7) (2024)
Abhishek Thakur, Joan Gizzio, Ronald M Levy
Potts Hamiltonian Models and Molecular Dynamics Free Energy Simulations for Predicting the Impact of Mutations on Protein Kinase Stability. The journal of physical chemistry. B 128 (7) (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Abhishek Thakur, Joan Gizzio, Ronald M Levy
Potts Hamiltonian Models and Molecular Dynamics Free Energy Simulations for Predicting the Impact of Mutations on Protein Kinase Stability. The journal of physical chemistry. B (2024)
Abhishek Thakur, Joan Gizzio, Ronald M Levy
Potts Hamiltonian Models and Molecular Dynamics Free Energy Simulations for Predicting the Impact of Mutations on Protein Kinase Stability. The journal of physical chemistry. B 128 (7) (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. Nature communications 15 (1) (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Carol Beth Post, Ronald M Levy
Evolutionary sequence and structural basis for the distinct conformational landscapes of Tyr and Ser/Thr kinases. bioRxiv : the preprint server for biology (2024)
Min Li, Dario Oliveira Passos, Zelin Shan, Steven J Smith, Qinfang Sun, Avik Biswas, Indrani Choudhuri, Timothy S Strutzenberg, Allan Haldane, Nanjie Deng, Zhaoyang Li, Xue Zhi Zhao, Lorenzo Briganti, Mamuka Kvaratskhelia, Terrence R Burke, Ronald M Levy, Stephen H Hughes, Robert Craigie, Dmitry Lyumkis
Mechanisms of HIV-1 integrase resistance to dolutegravir and potent inhibition of drug-resistant variants. Science advances 9 (29) (2023)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases. eLife 11 (2022)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases. eLife 11 (2022)
Indrani Choudhuri, Avik Biswas, Allan Haldane, Ronald M Levy
Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins. The journal of physical chemistry. B 126 (50) (2022)
Avik Biswas, Allan Haldane, Ronald M Levy
Limits to detecting epistasis in the fitness landscape of HIV. PloS one 17 (1) (2022)
Indrani Choudhuri, Avik Biswas, Allan Haldane, Ronald M Levy
Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins. The journal of physical chemistry. B (2022)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases. eLife 11 (2022)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases. eLife 11 (2022)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of Tyrosine vs Serine/Threonine Kinases. eLife 11 (2022)
Indrani Choudhuri, Avik Biswas, Allan Haldane, Ronald M Levy
Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins. The journal of physical chemistry. B 126 (50) (2022)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases. eLife 11 (2022)
Indrani Choudhuri, Avik Biswas, Allan Haldane, Ronald M Levy
Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins. The journal of physical chemistry. B 126 (50) (2022)
Indrani Choudhuri, Avik Biswas, Allan Haldane, Ronald M Levy
Contingency and Entrenchment of Drug-Resistance Mutations in HIV Viral Proteins. The journal of physical chemistry. B 126 (50) (2022)
Joan Gizzio, Abhishek Thakur, Allan Haldane, Ronald M Levy
Evolutionary divergence in the conformational landscapes of tyrosine vs serine/threonine kinases. eLife 11 (2022)
Shima Arasteh, Bin W Zhang, Ronald M Levy
Protein Loop Conformational Free Energy Changes via an Alchemical Path without Reaction Coordinates. The journal of physical chemistry letters 12 (18) (2021)
Bin W Zhang, Nobuyuki Matubayasi, Ronald M Levy
Cavity Particle in Aqueous Solution with a Hydrophobic Solute: Structure, Energetics, and Functionals. The journal of physical chemistry. B 124 (25) (2020)
Ronald M Levy, Nobuyuki Matubayasi, Bin W Zhang
Solvation Thermodynamics from the Perspective of Endpoints DFT. The journal of physical chemistry. B 124 (52) (2020)
Di Cui, Bin W Zhang, Zhiqiang Tan, Ronald M Levy
Ligand Binding Thermodynamic Cycles: Hysteresis, the Locally Weighted Histogram Analysis Method, and the Overlapping States Matrix. Journal of chemical theory and computation 16 (1) (2019)
Junchao Xia, William Flynn, Emilio Gallicchio, Keith Uplinger, Jonathan D Armstrong, Stefano Forli, Arthur J Olson, Ronald M Levy
Massive-Scale Binding Free Energy Simulations of HIV Integrase Complexes Using Asynchronous Replica Exchange Framework Implemented on the IBM WCG Distributed Network. Journal of chemical information and modeling 59 (4) (2019)
Avik Biswas, Allan Haldane, Eddy Arnold, Ronald M Levy
Epistasis and entrenchment of drug resistance in HIV-1 subtype B. eLife 8 (2019)
Pratibha C Koneru, Ashwanth C Francis, Nanjie Deng, Stephanie V Rebensburg, Ashley C Hoyte, Jared Lindenberger, Daniel Adu-Ampratwum, Ross C Larue, Michael F Wempe, Alan N Engelman, Dmitry Lyumkis, James R Fuchs, Ronald M Levy, Gregory B Melikyan, Mamuka Kvaratskhelia
HIV-1 integrase tetramers are the antiviral target of pyridine-based allosteric integrase inhibitors. eLife 8 (2019)
Yoshiki Ishii, Naoki Yamamoto, Nobuyuki Matubayasi, Bin W Zhang, Di Cui, Ronald M Levy
Spatially-Decomposed Free Energy of Solvation Based on the Endpoint Density-Functional Method. Journal of chemical theory and computation 15 (5) (2019)
Bin W Zhang, Di Cui, Nobuyuki Matubayasi, Ronald M Levy
The Excess Chemical Potential of Water at the Interface with a Protein from End Point Simulations. The journal of physical chemistry. B 122 (17) (2018)
Junchao Xia, William Flynn, Ronald M Levy
Improving Prediction Accuracy of Binding Free Energies and Poses of HIV Integrase Complexes Using the Binding Energy Distribution Analysis Method with Flattening Potentials. Journal of chemical information and modeling 58 (7) (2018)
Peng He, Bin W Zhang, Shima Arasteh, Lingle Wang, Robert Abel, Ronald M Levy
Conformational Free Energy Changes via an Alchemical Path without Reaction Coordinates. The journal of physical chemistry letters 9 (15) (2018)
Di Cui, Bin W Zhang, Nobuyuki Matubayasi, Ronald M Levy
The Role of Interfacial Water in Protein-Ligand Binding: Insights from the Indirect Solvent Mediated Potential of Mean Force. Journal of chemical theory and computation 14 (2) (2018)
Bin W Zhang, Nanjie Deng, Zhiqiang Tan, Ronald M Levy
Stratified UWHAM and Its Stochastic Approximation for Multicanonical Simulations Which Are Far from Equilibrium. Journal of chemical theory and computation 13 (10) (2017)
Ronald M Levy, Di Cui, Bin W Zhang, Nobuyuki Matubayasi
Relationship between Solvation Thermodynamics from IST and DFT Perspectives. The journal of physical chemistry. B 121 (15) (2017)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ronald M Levy (Ronald Levy)