Rongshan Yu

Publication Activity (10 Years)

Years Active: 2021-2024
Publications (10 Years): 11

Top Topics

Machine Learning

Top Venues

Nature communications

Briefings in bioinformatics

NPJ genomic medicine

Cancer research

This page only lists publications with an associated author ORCID identifier.

Publications

Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Xu Xiao, Qian Guo, Chuanliang Cui, Yating Lin, Lei Zhang, Xin Ding, Qiyuan Li, Minshu Wang, Wenxian Yang, Yan Kong, Rongshan Yu
Multiplexed imaging mass cytometry reveals distinct tumor-immune microenvironments linked to immunotherapy responses in melanoma. Communications medicine 2 (2022)
Yachen Liu, Yalan Lin, Wenxian Yang, Yuxiang Lin, Yujuan Wu, Zheyang Zhang, Nuoqi Lin, Xianlong Wang, Mengsha Tong, Rongshan Yu
Application of individualized differential expression analysis in human cancer proteome. Briefings in bioinformatics 23 (3) (2022)
Mingxuan Gao, Mingyi Ling, Xinwei Tang, Shun Wang, Xu Xiao, Ying Qiao, Wenxian Yang, Rongshan Yu
Comparison of high-throughput single-cell RNA sequencing data processing pipelines. Briefings in bioinformatics 22 (3) (2021)
Jintao Guo, Ying Zhou, Chaoqun Xu, Qinwei Chen, Zsófia M Sztupinszki, Judit Börcsök, Canqiang Xu, Feng Ye, Weiwei Tang, Jiapeng Kang, Lu Yang, Jiaxin Zhong, Taoling Zhong, Tianhui Hu, Rongshan Yu, Zoltan Szallasi, Xianming Deng, Qiyuan Li
Genetic Determinants of Somatic Selection of Mutational Processes in 3,566 Human Cancers. Cancer research 81 (16) (2021)
Chuanliang Cui, Canqiang Xu, Wenxian Yang, Zhihong Chi, Xinan Sheng, Lu Si, Yihong Xie, Jinyu Yu, Shun Wang, Rongshan Yu, Jun Guo, Yan Kong
Ratio of the interferon-γ signature to the immunosuppression signature predicts anti-PD-1 therapy response in melanoma. NPJ genomic medicine 6 (1) (2021)
Xu Xiao, Canqiang Xu, Wenxian Yang, Rongshan Yu
Inconsistent prediction capability of ImmuneCells.Sig across different RNA-seq datasets. Nature communications 12 (1) (2021)
Mingxuan Gao, Wenxian Yang, Chenxin Li, Yuqing Chang, Yachen Liu, Qingzu He, Chuan-Qi Zhong, Jianwei Shuai, Rongshan Yu, Jiahuai Han
Deep representation features from DreamDIAXMBD improve the analysis of data-independent acquisition proteomics. Communications biology 4 (1) (2021)