Michele Ceccarelli

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 40

Top Topics

Gene Expression

Top Venues

Nature communications

Journal of translational medicine

Nature medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Maria Claudia Costa, Claudia Angelini, Monica Franzese, Concetta Iside, Marco Salvatore, Luigi Laezza, Francesco Napolitano, Michele Ceccarelli
Identification of therapeutic targets in osteoarthritis by combining heterogeneous transcriptional datasets, drug-induced expression profiles, and known drug-target interactions. Journal of translational medicine 22 (1) (2024)
Maria Claudia Costa, Claudia Angelini, Monica Franzese, Concetta Iside, Marco Salvatore, Luigi Laezza, Francesco Napolitano, Michele Ceccarelli
Identification of therapeutic targets in osteoarthritis by combining heterogeneous transcriptional datasets, drug-induced expression profiles, and known drug-target interactions. Journal of translational medicine 22 (1) (2024)
Fengyao Yan, Limin Jiang, Danqian Chen, Michele Ceccarelli, Yan Guo
Reinventing gene expression connectivity through regulatory and spatial structural empowerment via principal node aggregation graph neural network. Nucleic acids research (2024)
Maria Claudia Costa, Claudia Angelini, Monica Franzese, Concetta Iside, Marco Salvatore, Luigi Laezza, Francesco Napolitano, Michele Ceccarelli
Identification of therapeutic targets in osteoarthritis by combining heterogeneous transcriptional datasets, drug-induced expression profiles, and known drug-target interactions. Journal of translational medicine 22 (1) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Maria Claudia Costa, Claudia Angelini, Monica Franzese, Concetta Iside, Marco Salvatore, Luigi Laezza, Francesco Napolitano, Michele Ceccarelli
Identification of therapeutic targets in osteoarthritis by combining heterogeneous transcriptional datasets, drug-induced expression profiles, and known drug-target interactions. Journal of translational medicine 22 (1) (2024)
Fengyao Yan, Limin Jiang, Danqian Chen, Michele Ceccarelli, Yan Guo
Reinventing gene expression connectivity through regulatory and spatial structural empowerment via principal node aggregation graph neural network. Nucleic acids research 52 (13) (2024)
Fengyao Yan, Limin Jiang, Danqian Chen, Michele Ceccarelli, Yan Guo
Reinventing gene expression connectivity through regulatory and spatial structural empowerment via principal node aggregation graph neural network. Nucleic acids research 52 (13) (2024)
Brian S White, Aurélien de Reyniès, Aaron M Newman, Joshua J Waterfall, Andrew Lamb, Florent Petitprez, Yating Lin, Rongshan Yu, Martin E Guerrero-Gimenez, Sergii Domanskyi, Gianni Monaco, Verena Chung, Jineta Banerjee, Daniel S Derrick, Alberto Valdeolivas, Haojun Li, Xu Xiao, Shun Wang, Frank Zheng, Wenxian Yang, Carlos A Catania, Benjamin J Lang, Thomas J Bertus, Carlo Piermarocchi, Francesca Pia Caruso, Michele Ceccarelli, Thomas Yu, Xindi Guo, Julie Bletz, John Coller, Holden Terry Maecker, Caroline Duault, Vida Shokoohi, Shailja Patel, Joanna E Liliental, Stockard Simon, null null, Julio Saez-Rodriguez, Laura M Heiser, Justin Guinney, Andrew J Gentles
Community assessment of methods to deconvolve cellular composition from bulk gene expression. Nature communications 15 (1) (2024)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer 4 (2) (2023)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer (2023)
Antonio De Falco, Francesca Pia Caruso, Xiao-Dong Su, Antonio Iavarone, Michele Ceccarelli
A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data. Nature communications 14 (1) (2023)
Jessica P Roelands, Peter J K Kuppen, Eiman I Ahmed, Raghvendra Mall, Tariq Ahmad Masoodi, Parul Singh, Gianni Monaco, Christophe Raynaud, Noel F C C de Miranda, Luigi Ferraro, Tatiana C Carneiro-Lobo, Najeeb Syed, Arun Rawat, Amany Awad, Julie V Decock, William Mifsud, Lance D Miller, Shimaa Sherif, Mahmoud G Mohamed, Darawan Rinchai, Marc Van den Eynde, Rosalyn W Sayaman, Elad Ziv, Francois Bertucci, Mahir Abdulla Petkar, Stephan Lorenz, Lisa Sara Mathew, Kun Wang, Selvasankar Murugesan, Damien Chaussabel, Alexander L Vahrmeijer, Ena Wang, Anna Ceccarelli, Khalid A Fakhro, Gabriele Zoppoli, Alberto Ballestrero, Rob A E M Tollenaar, Francesco M Marincola, Jerome Galon, Souhaila Al Khodor, Michele Ceccarelli, Wouter R L Hendrickx, Davide Bedognetti
An integrated tumor, immune and microbiome atlas of colon cancer. Nature medicine (2023)
Robert T McLaughlin, Maansi Asthana, Marc Di Meo, Michele Ceccarelli, Howard J Jacob, David L Masica
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning. NPJ precision oncology 7 (1) (2023)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer 4 (2) (2023)
Robert T McLaughlin, Maansi Asthana, Marc Di Meo, Michele Ceccarelli, Howard J Jacob, David L Masica
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning. NPJ precision oncology 7 (1) (2023)
Jessica P Roelands, Peter J K Kuppen, Eiman I Ahmed, Raghvendra Mall, Tariq Ahmad Masoodi, Parul Singh, Gianni Monaco, Christophe Raynaud, Noel F C C de Miranda, Luigi Ferraro, Tatiana C Carneiro-Lobo, Najeeb Syed, Arun Rawat, Amany Awad, Julie V Decock, William Mifsud, Lance D Miller, Shimaa Sherif, Mahmoud G Mohamed, Darawan Rinchai, Marc Van den Eynde, Rosalyn W Sayaman, Elad Ziv, Francois Bertucci, Mahir Abdulla Petkar, Stephan Lorenz, Lisa Sara Mathew, Kun Wang, Selvasankar Murugesan, Damien Chaussabel, Alexander L Vahrmeijer, Ena Wang, Anna Ceccarelli, Khalid A Fakhro, Gabriele Zoppoli, Alberto Ballestrero, Rob A E M Tollenaar, Francesco M Marincola, Jerome Galon, Souhaila Al Khodor, Michele Ceccarelli, Wouter R L Hendrickx, Davide Bedognetti
An integrated tumor, immune and microbiome atlas of colon cancer. Nature medicine 29 (5) (2023)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer 4 (2) (2023)
Robert T McLaughlin, Maansi Asthana, Marc Di Meo, Michele Ceccarelli, Howard J Jacob, David L Masica
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning. NPJ precision oncology 7 (1) (2023)
Antonio De Falco, Francesca Pia Caruso, Xiao-Dong Su, Antonio Iavarone, Michele Ceccarelli
A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data. Nature communications 14 (1) (2023)
Jessica P Roelands, Peter J K Kuppen, Eiman I Ahmed, Raghvendra Mall, Tariq Ahmad Masoodi, Parul Singh, Gianni Monaco, Christophe Raynaud, Noel F C C de Miranda, Luigi Ferraro, Tatiana C Carneiro-Lobo, Najeeb Syed, Arun Rawat, Amany Awad, Julie V Decock, William Mifsud, Lance D Miller, Shimaa Sherif, Mahmoud G Mohamed, Darawan Rinchai, Marc Van den Eynde, Rosalyn W Sayaman, Elad Ziv, Francois Bertucci, Mahir Abdulla Petkar, Stephan Lorenz, Lisa Sara Mathew, Kun Wang, Selvasankar Murugesan, Damien Chaussabel, Alexander L Vahrmeijer, Ena Wang, Anna Ceccarelli, Khalid A Fakhro, Gabriele Zoppoli, Alberto Ballestrero, Rob A E M Tollenaar, Francesco M Marincola, Jerome Galon, Souhaila Al Khodor, Michele Ceccarelli, Wouter R L Hendrickx, Davide Bedognetti
An integrated tumor, immune and microbiome atlas of colon cancer. Nature medicine (2023)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer 4 (2) (2023)
Ines Simeone, Michele Ceccarelli
Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators. Journal of translational medicine 21 (1) (2023)
Antonio De Falco, Francesca Pia Caruso, Xiao-Dong Su, Antonio Iavarone, Michele Ceccarelli
A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data. Nature communications 14 (1) (2023)
Antonio De Falco, Francesca Pia Caruso, Xiao-Dong Su, Antonio Iavarone, Michele Ceccarelli
A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data. Nature communications 14 (1) (2023)
Robert T McLaughlin, Maansi Asthana, Marc Di Meo, Michele Ceccarelli, Howard J Jacob, David L Masica
Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning. NPJ precision oncology 7 (1) (2023)
Antonio De Falco, Francesca Pia Caruso, Xiao-Dong Su, Antonio Iavarone, Michele Ceccarelli
A variational algorithm to detect the clonal copy number substructure of tumors from scRNA-seq data. Nature communications 14 (1) (2023)
Ines Simeone, Michele Ceccarelli
Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators. Journal of translational medicine 21 (1) (2023)
Ines Simeone, Michele Ceccarelli
Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators. Journal of translational medicine 21 (1) (2023)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer 4 (2) (2023)
Simona Migliozzi, Young Taek Oh, Mohammad Hasanain, Luciano Garofano, Fulvio D'Angelo, Ryan D Najac, Alberto Picca, Franck Bielle, Anna-Luisa Di Stefano, Julie Lerond, Jann N Sarkaria, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Integrative multi-omics networks identify PKCδ and DNA-PK as master kinases of glioblastoma subtypes and guide targeted cancer therapy. Nature cancer (2023)
Ines Simeone, Michele Ceccarelli
Pan-cancer onco-signatures reveal a novel mitochondrial subtype of luminal breast cancer with specific regulators. Journal of translational medicine 21 (1) (2023)
Luciano Garofano, Simona Migliozzi, Young Taek Oh, Fulvio D'Angelo, Ryan D Najac, Aram Ko, Brulinda Frangaj, Francesca Pia Caruso, Kai Yu, Jinzhou Yuan, Wenting Zhao, Anna Luisa Di Stefano, Franck Bielle, Tao Jiang, Peter Sims, Mario L Suvà, Fu-Chou Tang, Xiao-Dong Su, Michele Ceccarelli, Marc Sanson, Anna Lasorella, Antonio Iavarone
Pathway-based classification of glioblastoma uncovers a mitochondrial subtype with therapeutic vulnerabilities. Nature cancer 2 (2) (2021)
Antonella Paladino, Fulvio D'Angelo, Teresa Maria Rosaria Noviello, Antonio Iavarone, Michele Ceccarelli
Structural Model for Recruitment of RIT1 to the LZTR1 E3 Ligase: Evidences from an Integrated Computational Approach. Journal of chemical information and modeling 61 (4) (2021)
Teresa Maria Rosaria Noviello, Francesco Ceccarelli, Michele Ceccarelli, Luigi Cerulo
Deep learning predicts short non-coding RNA functions from only raw sequence data. PLoS computational biology 16 (11) (2020)
Fulvio D'Angelo, Michele Ceccarelli, null Tala, Luciano Garofano, Jing Zhang, Véronique Frattini, Francesca P Caruso, Genevieve Lewis, Kristin D Alfaro, Luc Bauchet, Giulia Berzero, David Cachia, Mario Cangiano, Laurent Capelle, John de Groot, Francesco DiMeco, François Ducray, Walid Farah, Gaetano Finocchiaro, Stéphane Goutagny, Carlos Kamiya-Matsuoka, Cinzia Lavarino, Hugues Loiseau, Véronique Lorgis, Carlo E Marras, Ian E McCutcheon, Do-Hyun Nam, Susanna Ronchi, Veronica Saletti, Romuald Seizeur, John Slopis, Mariona Suñol, Fanny Vandenbos, Pascale Varlet, Dominique Vidaud, Colin Watts, Viviane Tabar, David E Reuss, Seung-Ki Kim, David Meyronet, Karima Mokhtari, Hector Salvador, Krishna P Bhat, Marica Eoli, Marc Sanson, Anna Lasorella, Antonio Iavarone
The molecular landscape of glioma in patients with Neurofibromatosis 1. Nature medicine 25 (1) (2018)
Letícia Antunes Muniz Ferreira, Juliana Capannacci, Newton Key Hokama, Célia Regina Nogueira, Michele Ceccarelli, Luigi Cerulo, Fulvio D'Angelo, Paula O M Hokama
Circulating microRNAs expression profile in newly diagnosed and imatinib treated chronic phase - chronic myeloid leukemia. Leukemia & lymphoma 60 (3) (2018)
Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli
Detection of statistically significant network changes in complex biological networks. BMC systems biology 11 (1) (2017)