Ruifeng Hu

Publication Activity (10 Years)

Years Active: 2016-2023
Publications (10 Years): 12

Top Topics

Top Venues

Nucleic acids research

BMC bioinformatics

The international journal of neuropsychopharmacology

This page only lists publications with an associated author ORCID identifier.

Publications

Haodong Xu, Ruifeng Hu, Zhong-Ming Zhao
DegronMD: Leveraging evolutionary and structural features for deciphering protein-targeted degradation, mutations, and drug response to degrons. Molecular biology and evolution (2023)
Rohit Sharma, Gautam Kumar Mahanti, Ganapati Panda, Adyasha Rath, Sujata Dash, Saurav Mallik, Ruifeng Hu
A Framework for Detecting Thyroid Cancer from Ultrasound and Histopathological Images Using Deep Learning, Meta-Heuristics, and MCDM Algorithms. Journal of imaging 9 (9) (2023)
Yulin Dai, Ruifeng Hu, Andi Liu, Kyung Serk Cho, Astrid Marilyn Manuel, Xiaoyang Li, Xianjun Dong, Peilin Jia, Zhong-Ming Zhao
WebCSEA: web-based cell-type-specific enrichment analysis of genes. Nucleic acids research (2022)
Andi Liu, Yulin Dai, Emily F Mendez, Ruifeng Hu, Gabriel R Fries, Katherine E Najera, Shan Jiang, Thomas D Meyer, Laura Stertz, Peilin Jia, Consuelo Walss-Bass, Zhong-Ming Zhao
Genome-Wide Correlation of DNA Methylation and Gene Expression in Postmortem Brain Tissues of Opioid Use Disorder Patients. The international journal of neuropsychopharmacology 24 (11) (2022)
Guangsheng Pei, Ruifeng Hu, Peilin Jia, Zhong-Ming Zhao
DeepFun: a deep learning sequence-based model to decipher non-coding variant effect in a tissue- and cell type-specific manner. Nucleic acids research 49 (W1) (2021)
Emily Frances Mendez, Haichao Wei, Ruifeng Hu, Laura Stertz, Gabriel Rodrigo Fries, Xizi Wu, Katherine E Najera, Michael D Monterey, Christie M Lincoln, Joo-Won Kim, Karla Moriel, Thomas D Meyer, Sudhakar Selvaraj, Antonio L Teixeira, Zhong-Ming Zhao, Junqian Xu, Jiaqian Wu, Consuelo Walss-Bass
Angiogenic gene networks are dysregulated in opioid use disorder: evidence from multi-omics and imaging of postmortem human brain. Molecular psychiatry (2021)
Lucca Pizzato Tondo, Thiago Wendt Viola, Gabriel Rodrigo Fries, Bruno Kluwe-Schiavon, Leonardo Mello Rothmann, Renata Basso Cupertino, Pedro A Ferreira, Alexandre Rosa Franco, Scott D Lane, Laura Stertz, Zhong-Ming Zhao, Ruifeng Hu, Thomas Meyer, Joy M Schmitz, Consuelo Walss-Bass, Rodrigo Grassi-Oliveira
White matter deficits in cocaine use disorder: convergent evidence from in vivo diffusion tensor imaging and ex vivo proteomic analysis. Translational psychiatry 11 (1) (2021)
Peilin Jia, Ruifeng Hu, Guangsheng Pei, Yulin Dai, Yin-Ying Wang, Zhong-Ming Zhao
Deep generative neural network for accurate drug response imputation. Nature communications 12 (1) (2021)
Guangsheng Pei, Ruifeng Hu, Yulin Dai, Zhong-Ming Zhao, Peilin Jia
Decoding whole-genome mutational signatures in 37 human pan-cancers by denoising sparse autoencoder neural network. Oncogene 39 (27) (2020)
Ruifeng Hu, Xiaobo Sun
lncRNATargets: A platform for lncRNA target prediction based on nucleic acid thermodynamics. Journal of bioinformatics and computational biology 14 (4) (2016)
Ruifeng Hu, Guomin Ren, Guibo Sun, Xiaobo Sun
TarNet: An Evidence-Based Database for Natural Medicine Research. PloS one 11 (6) (2016)
Ruifeng Hu, Guibo Sun, Xiaobo Sun
LSCplus: a fast solution for improving long read accuracy by short read alignment. BMC bioinformatics 17 (1) (2016)