Ruy M Ribeiro

Scopus Author ID Ciência ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 31

Top Venues

Journal of the Royal Society, Interface

Nature communications

Proceedings of the National Academy of Sciences of the United States of America

Viruses

Los Alamos National Laboratory

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Los Alamos National Laboratory

United States

Staff Scientist :: Theoretical Biology & Biophysics

Universidade de Lisboa Faculdade de Medicina

Portugal

Director :: Laboratório de Biomatemática

Los Alamos National Laboratory

United States

Postdoctoral Researcher :: Theoretical Biology & Biophysics

Publications

Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Jen Symmonds, Thaidra Gaufin, Cuiling Xu, Kevin D Raehtz, Ruy M Ribeiro, Ivona Pandrea, Cristian Apetrei
Making a Monkey out of Human Immunodeficiency Virus/Simian Immunodeficiency Virus Pathogenesis: Immune Cell Depletion Experiments as a Tool to Understand the Immune Correlates of Protection and Pathogenicity in HIV Infection. Viruses 16 (6) (2024)
Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Susan Pereira Ribeiro, Zachary Strongin, Hugo Soudeyns, Felipe Ten-Caten, Khader Ghneim, Gabriela Pacheco Sanchez, Giuliana Xavier de Medeiros, Perla Mariana Del Río-Estrada, Adam-Nicolas Pelletier, Timothy Hoang, Kevin Nguyen, Justin Harper, Sherrie Jean, Chelsea Wallace, Robert Balderas, Jeffrey D Lifson, Gopalan Raghunathan, Eric Rimmer, Cinthia Pastuskova, Guoxin Wu, Luca Micci, Ruy M Ribeiro, Chi Ngai Chan, Jacob D Estes, Guido Silvestri, Daniel M Gorman, Bonnie J Howell, Daria J Hazuda, Mirko Paiardini, Rafick-Pierre Sekaly
Dual blockade of IL-10 and PD-1 leads to control of SIV viral rebound following analytical treatment interruption. Nature immunology (2024)
Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Jen Symmonds, Thaidra Gaufin, Cuiling Xu, Kevin D Raehtz, Ruy M Ribeiro, Ivona Pandrea, Cristian Apetrei
Making a Monkey out of Human Immunodeficiency Virus/Simian Immunodeficiency Virus Pathogenesis: Immune Cell Depletion Experiments as a Tool to Understand the Immune Correlates of Protection and Pathogenicity in HIV Infection. Viruses 16 (6) (2024)
Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Bevelynn Williams, Jonathan Carruthers, Joseph J Gillard, Grant Lythe, Alan S Perelson, Ruy M Ribeiro, Carmen Molina-París, Martín López-García
The reproduction number and its probability distribution for stochastic viral dynamics. Journal of the Royal Society, Interface 21 (210) (2024)
Jen Symmonds, Thaidra Gaufin, Cuiling Xu, Kevin D Raehtz, Ruy M Ribeiro, Ivona Pandrea, Cristian Apetrei
Making a Monkey out of Human Immunodeficiency Virus/Simian Immunodeficiency Virus Pathogenesis: Immune Cell Depletion Experiments as a Tool to Understand the Immune Correlates of Protection and Pathogenicity in HIV Infection. Viruses 16 (6) (2024)
Kara W Chew, Carlee B Moser, Eric S Daar, David Alain Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, null null, Michael D Hughes, Davey M Smith
Publisher Correction: Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19. Nature communications 14 (1) (2023)
Luís Graça, Ana Maria Caetano Faria, Ruy M Ribeiro
Illuminating a blind spot in SARS-CoV-2 immunity. Nature immunology (2023)
Mithra R Kumar, Emily J Fray, Alexandra M Bender, Carolin Zitzmann, Ruy M Ribeiro, Alan S Perelson, Dan H Barouch, Janet D Siliciano, Robert F Siliciano
Biphasic decay of intact SHIV genomes following initiation of antiretroviral therapy complicates analysis of interventions targeting the reservoir. Proceedings of the National Academy of Sciences of the United States of America 120 (43) (2023)
Benjamin B Policicchio, Erwing Fabian Cardozo Ojeda, Cuiling Xu, Dongzhu Ma, Tianyu He, Kevin D Raehtz, Ranjit Sivanandham, Adam J Kleinman, Alan S Perelson, Cristian Apetrei, Ivona Pandrea, Ruy M Ribeiro
CD8 + T cells control SIV infection using both cytolytic effects and non-cytolytic suppression of virus production. Nature communications 14 (1) (2023)
Ana Rita Henriques, Marta Gromicho, Julian Grosskreutz, Magdalena Kuzma-Kozakiewicz, Susanne Petri, Hilmi Uysal, Susana Pinto, Marília Antunes, Mamede de Carvalho, Ruy M Ribeiro
Association of the practice of contact sports with the development of amyotrophic lateral sclerosis. Amyotrophic lateral sclerosis & frontotemporal degeneration (2023)
Kara W Chew, Carlee B Moser, Eric S Daar, David Alain Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, null null, Michael D Hughes, Davey M Smith
Publisher Correction: Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19. Nature communications 14 (1) (2023)
Kara W Chew, Carlee B Moser, Eric S Daar, David Alain Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, null null, Michael D Hughes, Davey M Smith
Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19. Nature communications 13 (1) (2022)
Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee B Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David Alain Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li, null null
Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial. Nature microbiology 7 (11) (2022)
João Malato, Ruy M Ribeiro, Eugénia Fernandes, Pedro Pinto Leite, Pedro Casaca, Carlos Antunes, Válter R Fonseca, Manuel Carmo Gomes, Luís Graça
Rapid waning of protection induced by prior BA.1/BA.2 infection against BA.5 infection. medRxiv : the preprint server for health sciences (2022)
Katharine Best, Dan H Barouch, Jeremie Guedj, Ruy M Ribeiro, Alan S Perelson
Zika virus dynamics: Effects of inoculum dose, the innate immune response and viral interference. PLoS computational biology 17 (1) (2021)
Ruian Ke, Carolin Zitzmann, David D Ho, Ruy M Ribeiro, Alan S Perelson
In vivo kinetics of SARS-CoV-2 infection and its relationship with a person's infectiousness. Proceedings of the National Academy of Sciences of the United States of America 118 (49) (2021)
Ashish Goyal, Alan S Perelson, Abraham J Kandathil, Jeffrey Quinn, Ashwin Balagopal, Ruy M Ribeiro
HIV influences clustering and intracellular replication of hepatitis C virus. Journal of viral hepatitis 28 (2) (2020)
Ruy M Ribeiro, Luís Graça
Untangling the immune basis of disease susceptibility. eLife 9 (2020)
Alan S Perelson, Ruy M Ribeiro
Introduction to modeling viral infections and immunity. Immunological reviews 285 (1) (2019)
Erwing Fabian Cardozo Ojeda, Cristian Apetrei, Ivona Pandrea, Ruy M Ribeiro
The dynamics of simian immunodeficiency virus after depletion of CD8+ cells. Immunological reviews 285 (1) (2019)
Ruian Ke, Hui Li, Shuyi Wang, Wenge Ding, Ruy M Ribeiro, Elena E Giorgi, Tanmoy Bhattacharya, Richard J O Barnard, Beatrice H Hahn, George M Shaw, Alan S Perelson
Superinfection and cure of infected cells as mechanisms for hepatitis C virus adaptation and persistence. Proceedings of the National Academy of Sciences of the United States of America 115 (30) (2018)
Youfang Cao, Xue Lei, Ruy M Ribeiro, Alan S Perelson, Jie Liang
Probabilistic control of HIV latency and transactivation by the Tat gene circuit. Proceedings of the National Academy of Sciences of the United States of America 115 (49) (2018)
Melissa E Schechter, Bruno Bezerril Andrade, Tianyu He, George Haret Richter, Kevin W Tosh, Benjamin B Policicchio, Amrit P Singh, Kevin D Raehtz, Virginia Sheikh, Dongying Ma, Egidio Brocca-Cofano, Cristian Apetrei, Russell P Tracy, Ruy M Ribeiro, Alan Sher, Ivo M B Francischetti, Ivona Pandrea, Irini Sereti
Inflammatory monocytes expressing tissue factor drive SIV and HIV coagulopathy. Science translational medicine 9 (405) (2018)
E Fabian Cardozo, Adriana Andrade, John W Mellors, Daniel R Kuritzkes, Alan S Perelson, Ruy M Ribeiro
Treatment with integrase inhibitor suggests a new interpretation of HIV RNA decay curves that reveals a subset of cells with slow integration. PLoS pathogens 13 (7) (2017)
Soumya Banerjee, Jeremie Guedj, Ruy M Ribeiro, Melanie Moses, Alan S Perelson
Estimating biologically relevant parameters under uncertainty for experimental within-host murine West Nile virus infection. Journal of the Royal Society, Interface 13 (117) (2016)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ruy M Ribeiro