Ruian Ke

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 23

Top Venues

bioRxiv : the preprint server for biology

medRxiv : the preprint server for health sciences

Nature communications

Virus evolution

This page only lists publications with an associated author ORCID identifier.

Publications

Tin Phan, Jessica M Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa Iyaniwura, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson
Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion. bioRxiv : the preprint server for biology (2024)
Tin Phan, Jessica M Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa Iyaniwura, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson
Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion. bioRxiv : the preprint server for biology (2024)
Tin Phan, Jessica M Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa Iyaniwura, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson
Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion. bioRxiv : the preprint server for biology (2024)
Alan S Perelson, Tin Phan, Jessica M Conway, Nicole Pagane, Jasmine Kreig, Narmada Sambaturu, Sarafa Iyaniwura, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke
Understanding early HIV-1 rebound dynamics following antiretroviral therapy interruption: The importance of effector cell expansion. bioRxiv : the preprint server for biology (2024)
Michael D Kupperman, Ruian Ke, Thomas Leitner
Predicting Impacts of Contact Tracing on Epidemiological Inference from Phylogenetic Data. bioRxiv : the preprint server for biology (2023)
Emma E Goldberg, Qianying Lin, Ethan Obie Romero-Severson, Ruian Ke
Swift and extensive Omicron outbreak in China after sudden exit from 'zero-COVID' policy. Nature communications 14 (1) (2023)
Amir Dashti, Sophia Sukkestad, Anna M Horner, Margaret Neja, Zain Siddiqi, Chevaughn Waller, Jordan Goldy, Dominique Monroe, Alice Lin, Nils Schoof, Vidisha Singh, Maud Mavigner, Jeffrey D Lifson, Claire Deleage, Marina Tuyishime, Shane D Falcinelli, Hannah A D King, Ruian Ke, Rosemarie D Mason, Nancie M Archin, Richard M Dunham, Jeffrey T Safrit, Sherrie M Jean, Alan S Perelson, David M Margolis, Guido Ferrari, Mario Roederer, Guido Silvestri, Ann Chahroudi
AZD5582 plus SIV-specific antibodies reduce lymph node viral reservoirs in antiretroviral therapy-suppressed macaques. Nature medicine (2023)
Emma E Goldberg, Qianying Lin, Ethan Obie Romero-Severson, Ruian Ke
Swift and extensive Omicron outbreak in China after sudden exit from 'zero-COVID' policy. Nature communications 14 (1) (2023)
Alex Farrell, Tin Phan, Christopher B Brooke, Katia Koelle, Ruian Ke
Semi-infectious particles contribute substantially to influenza virus within-host dynamics when infection is dominated by spatial structure. Virus evolution 9 (1) (2023)
Tin Phan, Carolin Zitzmann, Kara W Chew, Davey M Smith, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Michael D Hughes, Manish C Choudhary, Rinki Deo, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson, null null
Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody. bioRxiv : the preprint server for biology (2023)
Michael D Kupperman, Thomas Leitner, Ruian Ke
A deep learning approach to real-time HIV outbreak detection using genetic data. PLoS computational biology 18 (10) (2022)
Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee B Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David Alain Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li, null null
Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial. Nature microbiology 7 (11) (2022)
Christiaan H van Dorp, Emma Goldberg, Ruian Ke, Nick Hengartner, Ethan Obie Romero-Severson
Global estimates of the fitness advantage of SARS-CoV-2 variant Omicron. Virus evolution 8 (2) (2022)
Ruian Ke, Pamela P Martinez, Rebecca L Smith, Laura L Gibson, Chad J Achenbach, Sally McFall, Chao Qi, Joshua Jacob, Etienne Dembele, Camille Bundy, Lacy M Simons, Egon A Ozer, Judd F Hultquist, Ramon Lorenzo-Redondo, Anita K Opdycke, Claudia Hawkins, Robert L Murphy, Agha Mirza, Madison Conte, Nicholas Gallagher, Chun Huai Luo, Junko Jarrett, Abigail Conte, Ruifeng Zhou, Mireille Farjo, Gloria Rendon, Christopher J Fields, Leyi Wang, Richard Fredrickson, Melinda E Baughman, Karen K Chiu, Hannah Choi, Kevin R Scardina, Alyssa N Owens, John Broach, Bruce A Barton, Peter Lazar, Matthew L Robinson, Heba H Mostafa, Yukari C Manabe, Andrew S Pekosz, David D McManus, Christopher B Brooke
Longitudinal Analysis of SARS-CoV-2 Vaccine Breakthrough Infections Reveals Limited Infectious Virus Shedding and Restricted Tissue Distribution. Open forum infectious diseases 9 (7) (2022)
Rebecca L Smith, Laura L Gibson, Pamela P Martinez, Ruian Ke, Agha Mirza, Madison Conte, Nicholas Gallagher, Abigail Conte, Leyi Wang, Rick Fredrickson, Darci C Edmonson, Melinda E Baughman, Karen K Chiu, Hannah Choi, Tor W Jensen, Kevin R Scardina, Shannon Bradley, Stacy L Gloss, Crystal Reinhart, Jagadeesh Yedetore, Alyssa N Owens, John Broach, Bruce Barton, Peter Lazar, Darcy Henness, Todd Young, Alastair Dunnett, Matthew L Robinson, Heba H Mostafa, Andrew S Pekosz, Yukari C Manabe, William J Heetderks, David D McManus, Christopher B Brooke
Longitudinal assessment of diagnostic test performance over the course of acute SARS-CoV-2 infection. medRxiv : the preprint server for health sciences (2021)
Ruian Ke, Pamela P Martinez, Rebecca L Smith, Laura L Gibson, Agha Mirza, Madison Conte, Nicholas Gallagher, Chun Huai Luo, Junko Jarrett, Abigail Conte, Tongyu Liu, Mireille Farjo, Kimberly K O Walden, Gloria Rendon, Christopher J Fields, Leyi Wang, Richard Fredrickson, Darci C Edmonson, Melinda E Baughman, Karen K Chiu, Hannah Choi, Kevin R Scardina, Shannon Bradley, Stacy L Gloss, Crystal Reinhart, Jagadeesh Yedetore, Jessica Quicksall, Alyssa N Owens, John Broach, Bruce Barton, Peter Lazar, William J Heetderks, Matthew L Robinson, Heba H Mostafa, Yukari C Manabe, Andrew S Pekosz, David D McManus, Christopher B Brooke
Daily sampling of early SARS-CoV-2 infection reveals substantial heterogeneity in infectiousness. medRxiv : the preprint server for health sciences (2021)
Leticia Cuéllar, Irene Torres, Ethan Obie Romero-Severson, Riya Mahesh, Nathaniel Ortega, Sarah Pungitore, Ruian Ke, Nicolas W Hengartner
Excess deaths reveal unequal impact of COVID-19 in Ecuador. BMJ global health 6 (9) (2021)
Ruian Ke, Pamela P Martinez, Rebecca L Smith, Laura L Gibson, Chad J Achenbach, Sally McFall, Chao Qi, Joshua Jacob, Etienne Dembele, Camille Bundy, Lacy M Simons, Egon Anderson Ozer, Judd F Hultquist, Ramon Lorenzo-Redondo, Anita K Opdycke, Claudia Hawkins, Robert L Murphy, Agha Mirza, Madison Conte, Nicholas Gallagher, Chun Huai Luo, Junko Jarrett, Abigail Conte, Ruifeng Zhou, Mireille Farjo, Gloria Rendon, Christopher J Fields, Leyi Wang, Richard Fredrickson, Melinda E Baughman, Karen K Chiu, Hannah Choi, Kevin R Scardina, Alyssa N Owens, John Broach, Bruce Barton, Peter Lazar, Matthew L Robinson, Heba H Mostafa, Yukari C Manabe, Andrew S Pekosz, David D McManus, Christopher B Brooke
Longitudinal analysis of SARS-CoV-2 vaccine breakthrough infections reveal limited infectious virus shedding and restricted tissue distribution. medRxiv : the preprint server for health sciences (2021)
Leticia Cuéllar, Irene Torres, Ethan Romero-Severson, Riya Mahesh, Nathaniel Ortega, Sarah Pungitore, Nicolas Hengartner, Ruian Ke
Excess deaths reveal the true spatial, temporal and demographic impact of COVID-19 on mortality in Ecuador. International journal of epidemiology (2021)
Ruian Ke, Carolin Zitzmann, David D Ho, Ruy M Ribeiro, Alan S Perelson
In vivo kinetics of SARS-CoV-2 infection and its relationship with a person's infectiousness. Proceedings of the National Academy of Sciences of the United States of America 118 (49) (2021)
Kawang Su Kim, Keisuke Ejima, Shoya Iwanami, Yasuhisa Fujita, Hirofumi Ohashi, Yoshiki Koizumi, Yusuke Asai, Shinji Nakaoka, Koichi Watashi, Kazuyuki Aihara, Robin N Thompson, Ruian Ke, Alan S Perelson, Shingo Iwami
A quantitative model used to compare within-host SARS-CoV-2, MERS-CoV, and SARS-CoV dynamics provides insights into the pathogenesis and treatment of SARS-CoV-2. PLoS biology 19 (3) (2021)
Ruian Ke, Steven Sanche, Ethan Romero-Severson, Nicholas Hengartner
Fast spread of COVID-19 in Europe and the US suggests the necessity of early, strong and comprehensive interventions. medRxiv : the preprint server for health sciences (2020)
Ethan Obie Romero-Severson, Nick Hengartner, Grant Meadors, Ruian Ke
Change in global transmission rates of COVID-19 through May 6 2020. PloS one 15 (8) (2020)

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Publication Activity (10 Years)

Top Topics

Top Venues

Ruian Ke