Jie Liang

Scopus Author ID ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 34

Top Topics

Genome Wide Association Study

Protein Protein

Top Venues

Proceedings of the National Academy of Sciences of the United States of America

Nature communications

bioRxiv : the preprint server for biology

The journal of physical chemistry. B

This page only lists publications with an associated author ORCID identifier.

Publications

Ilyas Khan, Sunan Li, Lihong Tao, Chong Wang, Bowei Ye, Huiyu Li, Xiaoyang Liu, Iqbal Ahmad, Wenqiang Su, Gongxun Zhong, Zhiyuan Wen, Jinliang Wang, Rong-Hong Hua, Ao Ma, Jie Liang, Xiao-Peng Wan, Zhi-Gao Bu, Yong-Hui Zheng
Tubeimosides are pan-coronavirus and filovirus inhibitors that can block their fusion protein binding to Niemann-Pick C1. Nature communications 15 (1) (2024)
Ilyas Khan, Sunan Li, Lihong Tao, Chong Wang, Bowei Ye, Huiyu Li, Xiaoyang Liu, Iqbal Ahmad, Wenqiang Su, Gongxun Zhong, Zhiyuan Wen, Jinliang Wang, Rong-Hong Hua, Ao Ma, Jie Liang, Xiao-Peng Wan, Zhi-Gao Bu, Yong-Hui Zheng
Tubeimosides are pan-coronavirus and filovirus inhibitors that can block their fusion protein binding to Niemann-Pick C1. Nature communications 15 (1) (2024)
Bowei Ye, Wei Tian, Boshen Wang, Jie Liang
CASTpFold: Computed Atlas of Surface Topography of the universe of protein Folds. bioRxiv : the preprint server for biology (2024)
Bowei Ye, Wei Tian, Boshen Wang, Jie Liang
CASTpFold: Computed Atlas of Surface Topography of the universe of protein Folds. bioRxiv : the preprint server for biology (2024)
Bowei Ye, Wei Tian, Boshen Wang, Jie Liang
CASTpFold: Computed Atlas of Surface Topography of the universe of protein Folds. bioRxiv : the preprint server for biology (2024)
Bowei Ye, Wei Tian, Boshen Wang, Jie Liang
CASTpFold: Computed Atlas of Surface Topography of the universe of protein Folds. bioRxiv : the preprint server for biology (2024)
Khalid H Bhat, Saurabh Priyadarshi, Sarah Naiyer, Xinyan Qu, Hammad Farooq, Eden Kleiman, Jeffery Xu, Xue Lei, Jose F Cantillo, Robert Wuerffel, Nicole Baumgarth, Jie Liang, Ann J Feeney, Amy L Kenter
An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation. Nature communications 14 (1) (2023)
Khalid H Bhat, Saurabh Priyadarshi, Sarah Naiyer, Xinyan Qu, Hammad Farooq, Eden Kleiman, Jeffery Xu, Xue Lei, Jose F Cantillo, Robert Wuerffel, Nicole Baumgarth, Jie Liang, Ann J Feeney, Amy L Kenter
An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation. Nature communications 14 (1) (2023)
Khalid H Bhat, Saurabh Priyadarshi, Sarah Naiyer, Xinyan Qu, Hammad Farooq, Eden Kleiman, Jeffery Xu, Xue Lei, Jose F Cantillo, Robert Wuerffel, Nicole Baumgarth, Jie Liang, Ann J Feeney, Amy L Kenter
An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation. Nature communications 14 (1) (2023)
Khalid H Bhat, Saurabh Priyadarshi, Sarah Naiyer, Xinyan Qu, Hammad Farooq, Eden Kleiman, Jeffery Xu, Xue Lei, Jose F Cantillo, Robert Wuerffel, Nicole Baumgarth, Jie Liang, Ann J Feeney, Amy L Kenter
An Igh distal enhancer modulates antigen receptor diversity by determining locus conformation. Nature communications 14 (1) (2023)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Ke Tang, Jorjethe Roca, Rong Chen, Anjum Ansari, Jie Liang
Thermodynamics of unfolding mechanisms of mouse mammary tumor virus pseudoknot from a coarse-grained loop-entropy model. Journal of biological physics 48 (2) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Farid Manuchehrfar, Huiyu Li, Ao Ma, Jie Liang
Reactive Vortexes in a Naturally Activated Process: Non-Diffusive Rotational Fluxes at Transition State Uncovered by Persistent Homology. The journal of physical chemistry. B 126 (45) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Shi-Jie Chen, Mubashir Hassan, Robert L Jernigan, Kejue Jia, Daisuke Kihara, Andrzej Kloczkowski, Sergei Kotelnikov, Dima Kozakov, Jie Liang, Adam Liwo, Silvina Matysiak, Jarek Meller, Cristian Micheletti, Julie C Mitchell, Sayantan Mondal, Ruth Nussinov, Kei-Ichi Okazaki, Dzmitry Padhorny, Jeffrey Skolnick, Tobin R Sosnick, George Stan, Ilya Vakser, Xiaoqin Zou, George D Rose
Opinion: Protein folds vs. protein folding: Differing questions, different challenges. Proceedings of the National Academy of Sciences of the United States of America 120 (1) (2022)
Qiu Sun, Alan Perez-Rathke, Daniel M Czajkowsky, Zhifeng Shao, Jie Liang
High-resolution single-cell 3D-models of chromatin ensembles during Drosophila embryogenesis. Nature communications 12 (1) (2021)
Farid Manuchehrfar, Huiyu Li, Wei Tian, Ao Ma, Jie Liang
Exact Topology of the Dynamic Probability Surface of an Activated Process by Persistent Homology. The journal of physical chemistry. B 125 (18) (2021)
Alan Perez-Rathke, Qiu Sun, Boshen Wang, Valentina Boeva, Zhifeng Shao, Jie Liang
CHROMATIX: computing the functional landscape of many-body chromatin interactions in transcriptionally active loci from deconvolved single cells. Genome biology 21 (1) (2020)
Jieling Zhao, Farid Manuchehrfar, Jie Liang
Cell-substrate mechanics guide collective cell migration through intercellular adhesion: a dynamic finite element cellular model. Biomechanics and modeling in mechanobiology 19 (5) (2020)
Xin Wang, Wei Tian, Bryan T Banh, Bethanie-Michelle Statler, Jie Liang, David E Stone
Mating yeast cells use an intrinsic polarity site to assemble a pheromone-gradient tracking machine. The Journal of cell biology 218 (11) (2019)
Anna Terebus, Chun Liu, Jie Liang
Discrete and continuous models of probability flux of switching dynamics: Uncovering stochastic oscillations in a toggle-switch system. The Journal of chemical physics 151 (18) (2019)
Wei Tian, Hammad Naveed, Meishan Lin, Jie Liang
GeTFEP: A general transfer free energy profile of transmembrane proteins. Protein science : a publication of the Protein Society 29 (2) (2019)
Wei Tian, Meishan Lin, Ke Tang, Jie Liang, Hammad Naveed
High-resolution structure prediction of β-barrel membrane proteins. Proceedings of the National Academy of Sciences of the United States of America 115 (7) (2018)
Alan Perez-Rathke, Monifa A Fahie, Christina Chisholm, Jie Liang, Min Chen
Mechanism of OmpG pH-Dependent Gating from Loop Ensemble and Single Channel Studies. Journal of the American Chemical Society 140 (3) (2018)
Yiqing Yang, Ruiqiong Guo, Kristen Gaffney, Miyeon Kim, Shaima Muhammednazaar, Wei Tian, Boshen Wang, Jie Liang, Kristen A Gaffney
Folding-Degradation Relationship of a Membrane Protein Mediated by the Universally Conserved ATP-Dependent Protease FtsH. Journal of the American Chemical Society 140 (13) (2018)
Youfang Cao, Xue Lei, Ruy M Ribeiro, Alan S Perelson, Jie Liang
Probabilistic control of HIV latency and transactivation by the Tat gene circuit. Proceedings of the National Academy of Sciences of the United States of America 115 (49) (2018)
Jieling Zhao, Youfang Cao, Luisa A DiPietro, Jie Liang
Dynamic cellular finite-element method for modelling large-scale cell migration and proliferation under the control of mechanical and biochemical cues: a study of re-epithelialization. Journal of the Royal Society, Interface 14 (129) (2017)
Gamze Gürsoy, Yun Xu, Jie Liang
Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. PLoS computational biology 13 (7) (2017)
Ke Tang, Jinfeng Zhang, Jie Liang
Distance-Guided Forward and Backward Chain-Growth Monte Carlo Method for Conformational Sampling and Structural Prediction of Antibody CDR-H3 Loops. Journal of chemical theory and computation 13 (1) (2016)