Sebastian Kmiecik

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 23

Top Topics

Staphylococcus Aureus

Molecular Dynamics

Top Venues

Nucleic acids research

International journal of molecular sciences

Protein science : a publication of the Protein Society

Pharmaceuticals (Basel, Switzerland)

This page only lists publications with an associated author ORCID identifier.

Publications

Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactions. Nucleic acids research (2024)
Oriol Bárcenas, Aleksander Kuriata, Mateusz Zalewski, Valentin Iglesias, Carlos Pintado, Grzegorz Firlik, Burdukiewicz Michał, Sebastian Kmiecik, Salvador Ventura
Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation. Nucleic acids research 52 (W1) (2024)
Chandran Nithin, Rocco Peter Fornari, Smita P Pilla, Karol Wroblewski, Mateusz Zalewski, Rafal Madaj, Andrzej Kolinski, Joanna M Macnar, Sebastian Kmiecik
Exploring protein functions from structural flexibility using CABS-flex modeling. Protein science : a publication of the Protein Society 33 (9) (2024)
Oriol Bárcenas, Aleksander Kuriata, Mateusz Zalewski, Valentin Iglesias, Carlos Pintado, Grzegorz Firlik, Burdukiewicz Michał, Sebastian Kmiecik, Salvador Ventura
Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation. Nucleic acids research 52 (W1) (2024)
Oriol Bárcenas, Aleksander Kuriata, Mateusz Zalewski, Valentin Iglesias, Carlos Pintado, Grzegorz Firlik, Burdukiewicz Michał, Sebastian Kmiecik, Salvador Ventura
Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation. Nucleic acids research (2024)
Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactions. Nucleic acids research 52 (13) (2024)
Oriol Bárcenas, Aleksander Kuriata, Mateusz Zalewski, Valentin Iglesias, Carlos Pintado, Grzegorz Firlik, Burdukiewicz Michał, Sebastian Kmiecik, Salvador Ventura
Aggrescan4D: structure-informed analysis of pH-dependent protein aggregation. Nucleic acids research 52 (W1) (2024)
Karol Kurpiejewski, Karolina Piecyk, Maciej Lukaszewicz, Karol Kamel, Kazimierz Chmurski, Sebastian Kmiecik, Marzena Jankowska-Anyszka
The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap Analogues. Pharmaceuticals (Basel, Switzerland) 17 (5) (2024)
Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactions. Nucleic acids research 52 (13) (2024)
Aleksandra E Badaczewska-Dawid, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
Structure prediction of linear and cyclic peptides using CABS-flex. Briefings in bioinformatics 25 (2) (2024)
Chandran Nithin, Rocco Peter Fornari, Smita P Pilla, Karol Wroblewski, Mateusz Zalewski, Rafal Madaj, Andrzej Kolinski, Joanna M Macnar, Sebastian Kmiecik
Exploring protein functions from structural flexibility using CABS-flex modeling. Protein science : a publication of the Protein Society 33 (9) (2024)
Karol Kurpiejewski, Karolina Piecyk, Maciej Lukaszewicz, Karol Kamel, Kazimierz Chmurski, Sebastian Kmiecik, Marzena Jankowska-Anyszka
The Synergistic Effect of N2 and N7 Modifications on the Inhibitory Efficacy of mRNA Cap Analogues. Pharmaceuticals (Basel, Switzerland) 17 (5) (2024)
Aleksandra E Badaczewska-Dawid, Aleksander Kuriata, Carlos Pintado, Javier García-Pardo, Burdukiewicz Michał, Valentin Iglesias, Sebastian Kmiecik, Salvador Ventura
A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms. Nucleic acids research (2023)
Aidan P Holman, Kimberly Quinn, Rakesh Kumar, Sebastian Kmiecik, Abid Ali, Dmitry Kurouski
Fatty Acids Reverse the Supramolecular Chirality of Insulin Fibrils. The journal of physical chemistry letters (2023)
Marta Struga, Piotr Roszkowski, Anna Bielenica, Dagmara Otto-Ślusarczyk, Karolina Stępień, Joanna Stefańska, Anna Zabost, Ewa Augustynowicz-Kopeć, Michał Koliński, Sebastian Kmiecik, Alina Myslovska, Małgorzata Wrzosek
N-Acylated Ciprofloxacin Derivatives: Synthesis and In Vitro Biological Evaluation as Antibacterial and Anticancer Agents. ACS omega 8 (21) (2023)
Alicja Chrzanowska, Marta Struga, Piotr Roszkowski, Michał Koliński, Sebastian Kmiecik, Karolina Jałbrzykowska, Anna T Zabost, Joanna Stefańska, Ewa M Augustynowicz-Kopeć, Małgorzata Wrzosek, Anna Bielenica
The Effect of Conjugation of Ciprofloxacin and Moxifloxacin with Fatty Acids on Their Antibacterial and Anticancer Activity. International journal of molecular sciences 23 (11) (2022)
Aleksandra E Badaczewska-Dawid, Javier García-Pardo, Aleksander Kuriata, Jordi Pujols, Salvador Ventura, Sebastian Kmiecik
A3D database: structure-based predictions of protein aggregation for the human proteome. Bioinformatics (Oxford, England) 38 (11) (2022)
Tomasz Szostek, Daniel Szulczyk, Jolanta Szymańska-Majchrzak, Michał Koliński, Sebastian Kmiecik, Dagmara Otto-Ślusarczyk, Aleksandra Zawodnik, Eliza Rajkowska, Kinga Chaniewicz, Marta Struga, Piotr Roszkowski
Design and Synthesis of Menthol and Thymol Derived Ciprofloxacin: Influence of Structural Modifications on the Antibacterial Activity and Anticancer Properties. International journal of molecular sciences 23 (12) (2022)
Aleksandra E Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes. Nucleic acids research (2022)
Mateusz Kurcinski, Sebastian Kmiecik, Mateusz Zalewski, Andrzej Kolinski
Protein-Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations. International journal of molecular sciences 22 (14) (2021)
Piotr Roszkowski, Jolanta Szymańska-Majchrzak, Michał Koliński, Sebastian Kmiecik, Małgorzata Wrzosek, Marta Struga, Daniel Szulczyk
Novel Tetrazole-Based Antimicrobial Agents Targeting Clinical Bacteria Strains: Exploring the Inhibition of Staphylococcus aureus DNA Topoisomerase IV and Gyrase. International journal of molecular sciences 23 (1) (2021)
Mateusz Zalewski, Sebastian Kmiecik, Michał Koliński
Molecular Dynamics Scoring of Protein-Peptide Models Derived from Coarse-Grained Docking. Molecules (Basel, Switzerland) 26 (11) (2021)
Mateusz Kurcinski, Aleksandra Badaczewska-Dawid, Michal Kolinski, Andrzej Kolinski, Sebastian Kmiecik
Flexible docking of peptides to proteins using CABS-dock. Protein science : a publication of the Protein Society 29 (1) (2019)