Chandran Nithin

ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 16

Top Venues

Nucleic acids research

Protein science : a publication of the Protein Society

Cellular and molecular life sciences : CMLS

RNA (New York, N.Y.)

International Institute of Molecular and Cell Biology

Indian Institute of Technology Kharagpur (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

International Institute of Molecular and Cell Biology Nov 03 2017

Poland

Research Associate :: Laboratory of Bioinformatics and Protein Engineering

Education History

Indian Institute of Technology Kharagpur May 07 2012

India

PHD :: Biotechnology

Indian Institute of Technology Kharagpur Jul 20 2010 - May 06 2012

India

MSC :: Biotechnology

Sree Chitra Thirunal College of Engineering

India

BSC :: Biotechnology and Biochemical Engineering

Publications

Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactions. Nucleic acids research (2024)
Chandran Nithin, Rocco Peter Fornari, Smita P Pilla, Karol Wroblewski, Mateusz Zalewski, Rafal Madaj, Andrzej Kolinski, Joanna M Macnar, Sebastian Kmiecik
Exploring protein functions from structural flexibility using CABS-flex modeling. Protein science : a publication of the Protein Society 33 (9) (2024)
Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactions. Nucleic acids research 52 (13) (2024)
Chandran Nithin, Sebastian Kmiecik, Roman Błaszczyk, Julita Nowicka, Irina Tuszyńska
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA-ligand interactions. Nucleic acids research 52 (13) (2024)
Chandran Nithin, Rocco Peter Fornari, Smita P Pilla, Karol Wroblewski, Mateusz Zalewski, Rafal Madaj, Andrzej Kolinski, Joanna M Macnar, Sebastian Kmiecik
Exploring protein functions from structural flexibility using CABS-flex modeling. Protein science : a publication of the Protein Society 33 (9) (2024)
Julita Gumna, Maciej Antczak, Ryszard W Adamiak, Janusz M Bujnicki, Shi-Jie Chen, Feng Ding, Pritha Ghosh, Jun Li, Sunandan Mukherjee, Chandran Nithin, Katarzyna Pachulska-Wieczorek, Almudena Ponce-Salvatierra, Mariusz Popenda, Joanna Sarzyńska, Tomasz K Wirecki, Dong Zhang, Sicheng Zhang, Tomasz Zok, Eric Westhof, Zhichiao Miao, Marta Szachniuk, Agnieszka Rybarczyk
Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models. International journal of molecular sciences 23 (17) (2022)
Anna Salerno-Kochan, Andreas Horn, Pritha Ghosh, Chandran Nithin, Anna Kościelniak, Andreas Meindl, Daniela Strauss, Ros Cisław Krutyhołowa, Oliver Rossbach, Janusz M Bujnicki, Monika Gaik, Jan Medenbach, Sebastian Glatt
Molecular insights into RNA recognition and gene regulation by the TRIM-NHL protein Mei-P26. Life science alliance 5 (8) (2022)
Chandran Nithin, Sunandan Mukherjee, Jolly Basak, Ranjit Prasad Bahadur
NCodR: A multi-class support vector machine classification to distinguish non-coding RNAs in Viridiplantae. Quantitative plant biology 3 (2022)
Aleksandra E Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes. Nucleic acids research (2022)
Arne Kuepper, Niall M McLoughlin, Saskia Neubacher, Alejandro Yeste-Vázquez, Estel Collado Camps, Chandran Nithin, Sunandan Mukherjee, Lucas Bethge, Janusz M Bujnicki, Roland Brock, Stefan Heinrichs, Tom N Grossmann
Constrained peptides mimic a viral suppressor of RNA silencing. Nucleic acids research (2021)
Natalia Koralewska, Agnieszka Szczepanska, Kinga Ciechanowska, Marta Wojnicka, Maria Pokornowska, Marek C Milewski, Dorota Gudanis, Daniel Baranowski, Chandran Nithin, Janusz M Bujnicki, Zofia Gdaniec, Marek Figlerowicz, Anna Kurzynska-Kokorniak
RNA and DNA G-quadruplexes bind to human dicer and inhibit its activity. Cellular and molecular life sciences : CMLS 78 (7) (2021)
Almudena Ponce-Salvatierra, Astha Joshi, Katarzyna Merdas, Chandran Nithin, Pritha Ghosh, Sunandan Mukherjee, Janusz M Bujnicki
Computational modeling of RNA 3D structure based on experimental data. Bioscience reports 39 (2) (2019)
Chandran Nithin, Sunandan Mukherjee, Ranjit Prasad Bahadur
A structure-based model for the prediction of protein-RNA binding affinity. RNA (New York, N.Y.) 25 (12) (2019)
Chandran Nithin, Pritha Ghosh, Janusz M Bujnicki
Bioinformatics Tools and Benchmarks for Computational Docking and 3D Structure Prediction of RNA-Protein Complexes. Genes 9 (9) (2018)
Sunandan Mukherjee, Chandran Nithin, Yasaswi Divakaruni, Ranjit Prasad Bahadur
Dissecting water binding sites at protein-protein interfaces: a lesson from the atomic structures in the Protein Data Bank. Journal of biomolecular structure & dynamics 37 (5) (2018)
Chandran Nithin, Sunandan Mukherjee, Ranjit Prasad Bahadur
A non-redundant protein-RNA docking benchmark version 2.0. Proteins 85 (2) (2016)

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Publication Activity (10 Years)

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Chandran Nithin