Simone Marini

Scopus Author ID Loop profile ORCID

Publication Activity (10 Years)

Years Active: 2016-2024
Publications (10 Years): 15

Top Topics

Antimicrobial Resistance

Mycobacterium Tuberculosis

Top Venues

bioRxiv : the preprint server for biology

JMIR public health and surveillance

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Simone Marini, Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher, Mattia A Prosperi
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier. bioRxiv : the preprint server for biology (2024)
Simone Marini, Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher, Mattia A Prosperi
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier. bioRxiv : the preprint server for biology (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Simone Marini, Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher, Mattia A Prosperi
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier. bioRxiv : the preprint server for biology (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Simone Rancati, Giovanna Nicora, Mattia A Prosperi, Riccardo Bellazzi, Simone Marini, Marco Salemi
Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders. bioRxiv : the preprint server for biology (2023)
Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J Pinnell, Jonathan E Bravo, Peter Ferm, Simone Marini, Mattia A Prosperi, Noelle Noyes, Paul S Morley, Christina Boucher
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic acids research (2022)
Simone Marini, Marco Oliva, Ilya B Slizovskiy, Rishabh A Das, Noelle Robertson Noyes, Tamer Kahveci, Christina Boucher, Mattia A Prosperi
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data. GigaScience 11 (2022)
John Lednicky, Marco Salemi, Kuttichantran Subramaniam, Thomas B Waltzek, Tara Sabo-Attwood, Julia C Loeb, Shannon Hentschel, Massimiliano S Tagliamonte, Simone Marini, Md Mahbubul Alam, Caroline J Stephenson, Maha Elbadry, John Glenn Morris
Earliest detection to date of SARS-CoV-2 in Florida: Identification together with influenza virus on the main entry door of a university building, February 2020. PloS one 16 (1) (2021)
Carla N Mavian, Simone Marini, Mattia A Prosperi, Marco Salemi
Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis. JMIR public health and surveillance 6 (3) (2020)
David M Stepien, Charles Hwang, Simone Marini, Chase A Pagani, Michael Sorkin, Noelle D Visser, Amanda K Huber, Nicole J Edwards, Shawn J Loder, Kaetlin Vasquez, Carlos A Aguilar, Ravi Kumar, Shamik Mascharak, Michael T Longaker, Jun Li, Benjamin Levi
Tuning Macrophage Phenotype to Mitigate Skeletal Muscle Fibrosis. Journal of immunology (Baltimore, Md. : 1950) 204 (8) (2020)
Carla N Mavian, Simone Marini, Mattia A Prosperi, Marco Salemi
Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on "A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis". JMIR public health and surveillance 6 (4) (2020)
Carla N Mavian, Simone Marini, Mattia A Prosperi, Marco Salemi
A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis. JMIR public health and surveillance 6 (2) (2020)
Simone Marini, Ivan Limongelli, Ettore Rizzo, Alberto Malovini, Edoardo Errichiello, Annalisa Vetro, Tan Da, Orsetta Zuffardi, Riccardo Bellazzi
A Data Fusion Approach to Enhance Association Study in Epilepsy. PloS one 11 (12) (2016)