Mattia A Prosperi (Mattia Prosperi)

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 30

Top Topics

Antimicrobial Resistance

Mycobacterium Tuberculosis

Top Venues

Journal of the American Heart Association

bioRxiv : the preprint server for biology

Journal of the American Medical Informatics Association : JAMIA

JMIR public health and surveillance

This page only lists publications with an associated author ORCID identifier.

Publications

Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association 13 (3) (2024)
Fang Li, Laila Rasmy, Yang Xiang, Jingna Feng, Ahmed Abdelhameed, Xinyue Hu, Zenan Sun, David Aguilar, Abhijeet Dhoble, Jingcheng Du, Qing Wang, Shuteng Niu, Yifang Dang, Xinyuan Zhang, Ziqian Xie, Yi Nian, JianPing He, Yujia Zhou, Jianfu Li, Mattia A Prosperi, Jiang Bian, Degui Zhi, Cui Tao
Dynamic Prognosis Prediction for Patients on DAPT After Drug-Eluting Stent Implantation: Model Development and Validation. Journal of the American Heart Association (2024)
Simone Marini, Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher, Mattia A Prosperi
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier. bioRxiv : the preprint server for biology (2024)
Simone Marini, Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher, Mattia A Prosperi
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier. bioRxiv : the preprint server for biology (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Simone Marini, Alexander Barquero, Anisha Ashok Wadhwani, Jiang Bian, Jaime Ruiz, Christina Boucher, Mattia A Prosperi
OCTOPUS: Disk-based, Multiplatform, Mobile-friendly Metagenomics Classifier. bioRxiv : the preprint server for biology (2024)
Mohammadali Serajian, Simone Marini, Jarno N Alanko, Noelle Robertson Noyes, Mattia A Prosperi, Christina Boucher
Scalable de novo classification of antibiotic resistance of Mycobacterium tuberculosis. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Simone Rancati, Giovanna Nicora, Mattia A Prosperi, Riccardo Bellazzi, Simone Marini, Marco Salemi
Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders. bioRxiv : the preprint server for biology (2023)
Sarah E Ser, Kristen Shear, Urszula A Snigurska, Mattia A Prosperi, Yonghui Wu, Tanja Magoc, Ragnhildur I Bjarnadottir, Robert James Lucero
Clinical Prediction Models for Hospital-Induced Delirium Using Structured and Unstructured Electronic Health Record Data: Protocol for a Development and Validation Study. JMIR research protocols 12 (2023)
Piaopiao Li, Tianchen Lyu, Khalid Alkhuzam, Eliot Spector, William T Donahoo, Sarah Bost, Yonghui Wu, William R Hogan, Mattia A Prosperi, Desmond A Schatz, Mark A Atkinson, Michael J Haller, Elizabeth A Shenkman, Yi Guo, Jiang Bian, Stephen R Benoit
The role of health system penetration rate in estimating the prevalence of type 1 diabetes in children and adolescents using electronic health records. Journal of the American Medical Informatics Association : JAMIA (2023)
Rebecca J Fisk, Aislinn Woody, Mattia A Prosperi, Robert L Cook, Christa L Cook, Krishna Vaddiparti
Assessing HIV-related stigma in the clinical setting: are providers in Florida interested? AIDS care (2023)
Nathalie Bonin, Enrique Doster, Hannah Worley, Lee J Pinnell, Jonathan E Bravo, Peter Ferm, Simone Marini, Mattia A Prosperi, Noelle Noyes, Paul S Morley, Christina Boucher
MEGARes and AMR++, v3.0: an updated comprehensive database of antimicrobial resistance determinants and an improved software pipeline for classification using high-throughput sequencing. Nucleic acids research (2022)
Simone Marini, Marco Oliva, Ilya B Slizovskiy, Rishabh A Das, Noelle Robertson Noyes, Tamer Kahveci, Christina Boucher, Mattia A Prosperi
AMR-meta: a k-mer and metafeature approach to classify antimicrobial resistance from high-throughput short-read metagenomics data. GigaScience 11 (2022)
Zhaoyi Chen, Hansi Zhang, Yi Guo, Thomas J George, Mattia A Prosperi, William R Hogan, Jiang Bian, Elizabeth A Shenkman, Fei Wang, Jiang Bian
Exploring the feasibility of using real-world data from a large clinical data research network to simulate clinical trials of Alzheimer's disease. NPJ digital medicine 4 (1) (2021)
Mattia A Prosperi, Simone Marini, Christina Boucher
Fast and exact quantification of motif occurrences in biological sequences. BMC bioinformatics 22 (1) (2021)
Shantanu Ghosh, Jiang Bian, Yi Guo, Mattia A Prosperi
Deep propensity network using a sparse autoencoder for estimation of treatment effects. Journal of the American Medical Informatics Association : JAMIA 28 (6) (2021)
Yi Guo, Yahan Zhang, Tianchen Lyu, Mattia A Prosperi, Fei Wang, Hua Xu, Jiang Bian
The application of artificial intelligence and data integration in COVID-19 studies: a scoping review. Journal of the American Medical Informatics Association : JAMIA 28 (9) (2021)
Shannan N Rich, Mattia A Prosperi, Emily M Klann, Pavel T Codreanu, Robert L Cook, Melissa K Turley
Evaluating the Diagnostic Paradigm for Group A and Non-Group A Streptococcal Pharyngitis in the College Student Population. Open forum infectious diseases 8 (11) (2021)
Carla N Mavian, Sergei Kosakovsky Pond, Simone Marini, Brittany Rife Magalis, Anne-Mieke Vandamme, Simon Dellicour, Samuel V Scarpino, Charlotte J Houldcroft, Julian Villabona-Arenas, Taylor K Paisie, Nídia Sequeira Trovão, Christina Boucher, Yun Zhang, Richard H Scheuermann, Olivier Gascuel, Tommy Tsan-Yuk Lam, Marc A Suchard, Ana Abecasis, Eduan Wilkinson, Tulio de Oliveira, Ana I Bento, Heiko A Schmidt, Darren Martin, James Hadfield, Nuno Faria, Nathan D Grubaugh, Richard A Neher, Guy Baele, Philippe Lemey, Tanja Stadler, Jan Albert, Keith A Crandall, Thomas Leitner, Alexandros Stamatakis, Mattia A Prosperi, Marco Salemi
Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable. Proceedings of the National Academy of Sciences of the United States of America 117 (23) (2020)
Carla N Mavian, Simone Marini, Mattia A Prosperi, Marco Salemi
Correction: A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis. JMIR public health and surveillance 6 (3) (2020)
Carla N Mavian, Simone Marini, Mattia A Prosperi, Marco Salemi
Authors' Reply to: Errors in Tracing Coronavirus SARS-CoV-2 Transmission Using a Maximum Likelihood Tree. Comment on "A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis". JMIR public health and surveillance 6 (4) (2020)
Carla N Mavian, Simone Marini, Mattia A Prosperi, Marco Salemi
A Snapshot of SARS-CoV-2 Genome Availability up to April 2020 and its Implications: Data Analysis. JMIR public health and surveillance 6 (2) (2020)
Steven M Lakin, Alan Kuhnle, Bahar Alipanahi, Noelle Robertson Noyes, Chris Dean, Martin Muggli, Rob Raymond, Zaid Abdo, Mattia A Prosperi, Keith E Belk, Paul S Morley, Christina Boucher
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Communications biology 2 (2019)
Mattia A Prosperi, Jae S Min, Jiang Bian, François Modave
Big data hurdles in precision medicine and precision public health. BMC medical informatics and decision making 18 (1) (2018)
Jacob D Ball, Mattia A Prosperi, Alfonza Brown, Xinguang Chen, Eben Kenah, Yang Yang, Derek A T Cummings, Caitlin M Rivers
The role of benzathine penicillin G in predicting and preventing all-cause acute respiratory disease in military recruits: 1991-2017. Epidemiology and infection 146 (14) (2018)
Jiang Bian, Yunpeng Zhao, Ramzi George Salloum, Yi Guo, Mo Wang, Mattia A Prosperi, Hansi Zhang, Xinsong Du, Laura J Ramirez-Diaz, Jiang Bian, Yuan Sun
Using Social Media Data to Understand the Impact of Promotional Information on Laypeople's Discussions: A Case Study of Lynch Syndrome. Journal of medical Internet research 19 (12) (2017)