Sun Kim

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 21

Top Topics

Dna Methylation

Top Venues

bioRxiv : the preprint server for biology

Briefings in bioinformatics

Nature communications

Bioinformatics (Oxford, England)

This page only lists publications with an associated author ORCID identifier.

Publications

Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, Random Promoter Dream Challenge Consortium, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Dongmin Bang, Bonil Koo, Sun Kim
Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Dongmin Bang, Bonil Koo, Sun Kim
Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Sung-Yeon Hwang, Hyewon Kim, Danielle Denisko, Boxun Zhao, Do Hoon Lee, Jiseok Jeong, Jinuk Kim, Kiwon Park, Junhyun Park, Dongjoon Jeong, Sehong Park, Hee-Jung Choi, Sun Kim, Eunjung Alice Lee, Kwangseog Ahn
Human cytomegalovirus harnesses host L1 retrotransposon for efficient replication. Nature communications 15 (1) (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Dongmin Bang, Bonil Koo, Sun Kim
Transfer learning of condition-specific perturbation in gene interactions improves drug response prediction. Bioinformatics (Oxford, England) 40 (Supplement_1) (2024)
Dongmin Bang, Sangsoo Lim, Sangseon Lee, Sun Kim
Biomedical knowledge graph learning for drug repurposing by extending guilt-by-association to multiple layers. Nature communications 14 (1) (2023)
Minwoo Pak, Sangseon Lee, Inyoung Sung, Bonil Koo, Sun Kim
Improved drug response prediction by drug target data integration via network-based profiling. Briefings in bioinformatics (2023)
Do Hoon Lee, Bonil Koo, Jeewon Yang, Sun Kim
Metheor: Ultrafast DNA methylation heterogeneity calculation from bisulfite read alignments. PLoS computational biology 19 (3) (2023)
Jeonghyeon Gu, Dongmin Bang, Jungseob Yi, Sangseon Lee, Dong Kyu Kim, Sun Kim
A model-agnostic framework to enhance knowledge graph-based drug combination prediction with drug-drug interaction data and supervised contrastive learning. Briefings in bioinformatics (2023)
Hyeonseong Jeon, Junhak Ahn, Byunggook Na, Soona Hong, Lee Sael, Sun Kim, Sungroh Yoon, Daehyun Baek
AIVariant: a deep learning-based somatic variant detector for highly contaminated tumor samples. Experimental & molecular medicine (2023)
Minwoo Pak, Sangseon Lee, Inyoung Sung, Bonil Koo, Sun Kim
Improved drug response prediction by drug target data integration via network-based profiling. Briefings in bioinformatics 24 (2) (2023)
Jung-Ki Yoon, Sungjoon Park, Kyoung-Hee Lee, Dabin Jeong, Jisu Woo, Jieun Park, Seung-Muk Yi, Do Hyun Han, Chul Gyu Yoo, Sun Kim, Chang Hoon Lee
Machine Learning-Based Proteomics Reveals Ferroptosis in COPD Patient-Derived Airway Epithelial Cells Upon Smoking Exposure. Journal of Korean medical science 38 (29) (2023)
Inyoung Sung, Sangseon Lee, Minwoo Pak, Yunyol Shin, Sun Kim
AutoCoV: tracking the early spread of COVID-19 in terms of the spatial and temporal patterns from embedding space by K-mer based deep learning. BMC bioinformatics 23 (Suppl 3) (2022)
Do Hoon Lee, Jeewon Yang, Sun Kim
Learning the histone codes with large genomic windows and three-dimensional chromatin interactions using transformer. Nature communications 13 (1) (2022)
Bonil Koo, Do Hoon Lee, Sangseon Lee, Inyoung Sung, Sun Kim, Sunho Lee
Risk Stratification for Breast Cancer Patient by Simultaneous Learning of Molecular Subtype and Survival Outcome Using Genetic Algorithm-Based Gene Set Selection. Cancers 14 (17) (2022)
Jihye Shin, Yinhua Piao, Dongmin Bang, Sun Kim, Kyuri Jo
DRPreter: Interpretable Anticancer Drug Response Prediction Using Knowledge-Guided Graph Neural Networks and Transformer. International journal of molecular sciences 23 (22) (2022)
Dongmin Bang, Jeonghyeon Gu, Joonhyeong Park, Dabin Jeong, Bonil Koo, Jungseob Yi, Jihye Shin, Inuk Jung, Sun Kim, Sunho Lee
A Survey on Computational Methods for Investigation on ncRNA-Disease Association through the Mode of Action Perspective. International journal of molecular sciences 23 (19) (2022)
Minsu Kim, Sangseon Lee, Sangsoo Lim, Sun Kim
SpliceHetero: An information theoretic approach for measuring spliceomic intratumor heterogeneity from bulk tumor RNA-seq. PloS one 14 (10) (2019)