Wuming Gong

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 16

Top Venues

Nature communications

bioRxiv : the preprint server for biology

Development (Cambridge, England)

Nature biotechnology

This page only lists publications with an associated author ORCID identifier.

Publications

Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, Random Promoter Dream Challenge Consortium, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Wuming Gong, Nikita Dsouza, Daniel J Garry
SeATAC: a tool for exploring the chromatin landscape and the role of pioneer factors. Genome biology 24 (1) (2023)
Soyul Han, Woongsun Jeon, Wuming Gong, Il-Youp Kwak
MCHeart: Multi-Channel-Based Heart Signal Processing Scheme for Heart Noise Detection Using Deep Learning. Biology 12 (10) (2023)
Naoko Koyano-Nakagawa, Wuming Gong, Satyabrata Das, Joshua W M Theisen, Tran B Swanholm, Daniel Van Ly, Nikita Dsouza, Bhairab N Singh, Hiroko Kawakami, Samantha Young, Katherine Q Chen, Yasuhiko Kawakami, Daniel J Garry
Etv2 regulates enhancer chromatin status to initiate Shh expression in the limb bud. Nature communications 13 (1) (2022)
Wuming Gong, Satyabrata Das, Javier E Sierra-Pagan, Erik Skie, Nikita Dsouza, Thijs A Larson, Mary G Garry, Edgar Luzete-Monteiro, Kenneth S Zaret, Daniel J Garry
ETV2 functions as a pioneer factor to regulate and reprogram the endothelial lineage. Nature cell biology 24 (5) (2022)
Geunho Maeng, Satyabrata Das, Sarah M Greising, Wuming Gong, Bhairab N Singh, Stefan Kren, Daniel Mickelson, Erik Skie, Ohad Gafni, Jacob R Sorensen, Cyprian V Weaver, Daniel J Garry, Mary G Garry
Humanized skeletal muscle in MYF5/MYOD/MYF6-null pig embryos. Nature biomedical engineering 5 (8) (2021)
Hirotaka Tao, Jean-Philippe Lambert, Theodora M Yung, Min Zhu, Noah A Hahn, Danyi Li, Kimberly Lau, Kendra Sturgeon, Vijitha Puviindran, Xiaoyun Zhang, Wuming Gong, Xiao Xiao Chen, Gregory Anderson, Daniel J Garry, R Mark Henkelman, Yu Sun, Angelo Iulianella, Yasuhiko Kawakami, Anne-Claude Gingras, Chi-Chung Hui, Sevan Hopyan
IRX3/5 regulate mitotic chromatid segregation and limb bud shape. Development (Cambridge, England) 147 (19) (2020)
Satyabrata Das, Naoko Koyano-Nakagawa, Ohad Gafni, Geunho Maeng, Bhairab N Singh, Tara Rasmussen, Xiaoyan Pan, Kyung-Dal Choi, Daniel Mickelson, Wuming Gong, Pruthvi Pota, Cyprian V Weaver, Stefan Kren, Jacob H Hanna, Demetris Yannopoulos, Mary G Garry, Daniel J Garry
Generation of human endothelium in pig embryos deficient in ETV2. Nature biotechnology 38 (3) (2020)
Naoyuki Tahara, Hiroko Kawakami, Katherine Q Chen, Aaron Anderson, Malina Yamashita Peterson, Wuming Gong, Pruthvi Shah, Shinichi Hayashi, Ryuichi Nishinakamura, Yasushi Nakagawa, Daniel J Garry, Yasuhiko Kawakami
Sall4 regulates neuromesodermal progenitors and their descendants during body elongation in mouse embryos. Development (Cambridge, England) 146 (14) (2019)
Bhairab N Singh, Wuming Gong, Satyabrata Das, Joshua W M Theisen, Javier E Sierra-Pagan, Demetris Yannopoulos, Erik Skie, Pruthvi Shah, Mary G Garry, Daniel J Garry
Etv2 transcriptionally regulates Yes1 and promotes cell proliferation during embryogenesis. Scientific reports 9 (1) (2019)
Wuming Gong, Il-Youp Kwak, Naoko Koyano-Nakagawa, Wei Pan, Daniel J Garry
TCM visualizes trajectories and cell populations from single cell data. Nature communications 9 (1) (2018)
Bhairab N Singh, Naoko Koyano-Nakagawa, Wuming Gong, Ivan P Moskowitz, Cyprian V Weaver, Elizabeth Braunlin, Satyabrata Das, Jop H van Berlo, Mary G Garry, Daniel J Garry
A conserved HH-Gli1-Mycn network regulates heart regeneration from newt to human. Nature communications 9 (1) (2018)
Wuming Gong, Tara L Rasmussen, Bhairab N Singh, Naoko Koyano-Nakagawa, Wei Pan, Daniel J Garry
Dpath software reveals hierarchical haemato-endothelial lineages of Etv2 progenitors based on single-cell transcriptome analysis. Nature communications 8 (2017)

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Publication Activity (10 Years)

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Wuming Gong