Carl G de Boer (Carl de Boer)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 17

Top Venues

Nature structural & molecular biology

bioRxiv : the preprint server for biology

Nature

Nature reviews. Genetics

University of British Columbia

University of Toronto (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of British Columbia Jan 01 2020

Canada

Assistant Professor :: School of Biomedical Engineering

Education History

University of Toronto Sep 01 2008 - Jan 25 2014

Canada

PHD :: Molecular Genetics

Publications

Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, Random Promoter Dream Challenge Consortium, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Carl G de Boer
The continuum of transcription factor affinities. Nature reviews. Genetics 25 (6) (2024)
Ishika Luthra, Cassandra Jensen, Xinyi E Chen, Asfar Lathif Salaudeen, Abdul Muntakim Rafi, Carl G de Boer
Regulatory activity is the default DNA state in eukaryotes. Nature structural & molecular biology 31 (3) (2024)
Abdul Muntakim Rafi, Daria S Nogina, Dmitry Penzar, Do Hoon Lee, Danyeong Lee, Nayeon Kim, Sangyeup Kim, Dohyeon Kim, Yeojin Shin, Il-Youp Kwak, Georgy Meshcheryakov, Andrey Lando, Arsenii Zinkevich, Byeong-Chan Kim, Juhyun Lee, Taein Kang, Eeshit Dhaval Vaishnav, Payman Yadollahpour, null null, Sun Kim, Jake Albrecht, Aviv Regev, Wuming Gong, Ivan V Kulakovskiy, Pablo Meyer, Carl G de Boer
Evaluation and optimization of sequence-based gene regulatory deep learning models. bioRxiv : the preprint server for biology (2024)
Ishika Luthra, Cassandra Jensen, Xinyi E Chen, Asfar Lathif Salaudeen, Abdul Muntakim Rafi, Carl G de Boer
Regulatory activity is the default DNA state in eukaryotes. Nature structural & molecular biology 31 (3) (2024)
Carl G de Boer
The continuum of transcription factor affinities. Nature reviews. Genetics (2024)
Ishika Luthra, Cassandra Jensen, Xinyi E Chen, Asfar Lathif Salaudeen, Abdul Muntakim Rafi, Carl G de Boer
Regulatory activity is the default DNA state in eukaryotes. Nature structural & molecular biology (2024)
Ishika Luthra, Cassandra Jensen, Xinyi E Chen, Asfar Lathif Salaudeen, Abdul Muntakim Rafi, Carl G de Boer
Regulatory activity is the default DNA state in eukaryotes. Nature structural & molecular biology 31 (3) (2024)
Carl G de Boer, Jussi Taipale
Hold out the genome: a roadmap to solving the cis-regulatory code. Nature (2023)
Eeshit Dhaval Vaishnav, Carl G de Boer, Jennifer Molinet, Moran Yassour, Lin Fan, Xian Adiconis, Dawn A Thompson, Joshua Z Levin, Francisco A Cubillos, Aviv Regev
The evolution, evolvability and engineering of gene regulatory DNA. Nature 603 (7901) (2022)
Kousuke Mouri, Michael H Guo, Carl G de Boer, Michelle M Lissner, Ingrid A Harten, Gregory A Newby, Hannah A DeBerg, Winona F Platt, Matteo Gentili, David R Liu, Daniel J Campbell, Nir Hacohen, Ryan Tewhey, John P Ray
Prioritization of autoimmune disease-associated genetic variants that perturb regulatory element activity in T cells. Nature genetics 54 (5) (2022)
Xiaoming Lu, Xiaoting Chen, Carmy Forney, Omer Donmez, Daniel Miller, Sreeja Parameswaran, Ted Hong, Yongbo Huang, Mario Pujato, Tareian Cazares, Emily R Miraldi, John P Ray, Carl G de Boer, John B Harley, Matthew T Weirauch, Leah C Kottyan
Global discovery of lupus genetic risk variant allelic enhancer activity. Nature communications 12 (1) (2021)
Carl G de Boer, John P Ray, Nir Hacohen, Aviv Regev
MAUDE: inferring expression changes in sorting-based CRISPR screens. Genome biology 21 (1) (2020)
Carl G de Boer, Eeshit Dhaval Vaishnav, Ronen Sadeh, Esteban Luis Abeyta, Nir Friedman, Aviv Regev
Deciphering eukaryotic gene-regulatory logic with 100 million random promoters. Nature biotechnology 38 (1) (2019)
Carl G de Boer, Aviv Regev
BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization. BMC bioinformatics 19 (1) (2018)

Carl G de Boer.css-eqlu8i{font-size:small;padding-left:4px;} (Carl de Boer)

Publication Activity (10 Years)

Top Topics

Top Venues

Carl G de Boer (Carl de Boer)