Teemu Kallonen

ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 15

Top Venues

mBio

Microbiology spectrum

Nature communications

Wellcome open research

Universitetet i Oslo

Univesity of Turku (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Universitetet i Oslo Feb 01 2017 - Mar 30 2020

Norway

Postdoctoral fellow :: Department of Biostatistics

Wellcome Trust Sanger Institute

United Kingdom

Senior bioinformatician :: Pathogen genomics

University of Turku

Finland

Postdoctoral fellow :: Medical Microbiology and Immunology

Turku Graduate School for Biomedical Sciences

Finland

Graduate student

National Institute for Healt and Wellfare

Finland

Reseacher :: Pertussis laboratory

Education History

Univesity of Turku

Finland

PHD :: Medical Microbiology and Immunology

University of Turku

Finland

MSC :: Biology

Publications

Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Heidi Isokääntä, Natalie Tomnikov, Sanja Vanhatalo, Eveliina Munukka, Pentti Huovinen, Antti J Hakanen, Teemu Kallonen
High-throughput DNA extraction strategy for fecal microbiome studies. Microbiology spectrum 12 (6) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Heidi Isokääntä, Natalie Tomnikov, Sanja Vanhatalo, Eveliina Munukka, Pentti Huovinen, Antti J Hakanen, Teemu Kallonen
High-throughput DNA extraction strategy for fecal microbiome studies. Microbiology spectrum 12 (6) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Heidi Isokääntä, Natalie Tomnikov, Sanja Vanhatalo, Eveliina Munukka, Pentti Huovinen, Antti J Hakanen, Teemu Kallonen
High-throughput DNA extraction strategy for fecal microbiome studies. Microbiology spectrum (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Harry A Thorpe, Ross Booton, Teemu Kallonen, Marjorie J Gibbon, Natacha Couto, Virginie Passet, Sebastián López-Fernández, Carla Rodrigues, Louise Matthews, Sonia Natalie Mitchell, Richard Reeve, Sophia David, Cristina Merla, Marta Corbella, Carolina Ferrari, Francesco Comandatore, Piero Marone, Sylvain Brisse, Davide Sassera, Jukka Corander, Edward J Feil
A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings. Nature microbiology 7 (12) (2022)
Tommi Mäklin, Teemu Kallonen, Sophia David, Christine J Boinett, Ben Pascoe, Guillaume Méric, David M Aanensen, Edward J Feil, Stephen Baker, Julian Parkhill, Samuel K Sheppard, Jukka Corander, Antti Honkela
High-resolution sweep metagenomics using fast probabilistic inference. Wellcome open research 5 (2021)
Miralda Madar Johansson, Eva Bélurier, Anastassios C Papageorgiou, Anders P Sundin, Jani Rahkila, Teemu Kallonen, Ulf J Nilsson, Santeri Maatsola, Thomas K M Nyholm, Jarmo Käpylä, Jukka Corander, Reko Leino, Jukka Finne, Susann Teneberg, Sauli Haataja
The binding mechanism of the virulence factor Streptococcus suis adhesin P subtype to globotetraosylceramide is associated with systemic disease. The Journal of biological chemistry 295 (42) (2020)
Tommi Mäklin, Teemu Kallonen, Sophia David, Christine J Boinett, Ben Pascoe, Guillaume Méric, David M Aanensen, Edward J Feil, Stephen Baker, Julian Parkhill, Samuel K Sheppard, Jukka Corander, Antti Honkela
High-resolution sweep metagenomics using fast probabilistic inference. Wellcome open research 5 (2020)
Teemu Kallonen, Hayley J Brodrick, Simon R Harris, Jukka Corander, Nicholas M Brown, Veronique Martin, Sharon J Peacock, Julian Parkhill
Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131. Genome research (2017)

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Publication Activity (10 Years)

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Teemu Kallonen