Stephen D Bentley

ORCID

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 43

Top Venues

Nature communications

Nature

Genome research

mBio

Wellcome Sanger Institute

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Wellcome Sanger Institute Nov 02 1998

United Kingdom

Principal Scientist/Team Leader :: Parasites and Microbes

University of Cambridge Oct 01 1995 - Oct 01 1998

United Kingdom

Postdoctoral research associate :: Biochemistry

Publications

Ouli Xie, Cameron Zachreson, Gerry Tonkin-Hill, David J Price, Jake A Lacey, Jacqueline M Morris, Malcolm I McDonald, Asha C Bowen, Philip M Giffard, Bart J Currie, Jonathan R Carapetis, Deborah C Holt, Stephen D Bentley, Mark R Davies, Steven Y C Tong
Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange. Nature communications 15 (1) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographical migration and fitness dynamics of Streptococcus pneumoniae. Nature 631 (8020) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research 34 (7) (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographical migration and fitness dynamics of Streptococcus pneumoniae. Nature 631 (8020) (2024)
Akuzike Kalizang'oma, Damien Richard, Brenda Anna Kwambana-Adams, Juliana Coelho, Karen Broughton, Bruno Pichon, Katie L Hopkins, Victoria Chalker, Sandra Beleza, Stephen D Bentley, Chrispin Chaguza, Robert Simon Heyderman
Population genomics of Streptococcus mitis in UK and Ireland bloodstream infection and infective endocarditis cases. Nature communications 15 (1) (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographical migration and fitness dynamics of Streptococcus pneumoniae. Nature 631 (8020) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research 34 (7) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Ouli Xie, Jacqueline M Morris, Andrew J Hayes, Rebecca J Towers, Magnus G Jespersen, John A Lees, Nouri L Ben Zakour, Olga Berking, Sarah L Baines, Glen P Carter, Gerry Tonkin-Hill, Layla Schrieber, Liam McIntyre, Jake A Lacey, Taylah B James, Kadaba S Sriprakash, Scott A Beatson, Tadao Hasegawa, Phil Giffard, Andrew C Steer, Michael R Batzloff, Bernard W Beall, Marcos D Pinho, Mario Ramirez, Debra E Bessen, Gordon Dougan, Stephen D Bentley, Mark J Walker, Bart J Currie, Steven Y C Tong, David J McMillan, Mark R Davies
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis. Nature communications 15 (1) (2024)
Ouli Xie, Jacqueline M Morris, Andrew J Hayes, Rebecca J Towers, Magnus G Jespersen, John A Lees, Nouri L Ben Zakour, Olga Berking, Sarah L Baines, Glen P Carter, Gerry Tonkin-Hill, Layla Schrieber, Liam McIntyre, Jake A Lacey, Taylah B James, Kadaba S Sriprakash, Scott A Beatson, Tadao Hasegawa, Phil Giffard, Andrew C Steer, Michael R Batzloff, Bernard W Beall, Marcos D Pinho, Mario Ramirez, Debra E Bessen, Gordon Dougan, Stephen D Bentley, Mark J Walker, Bart J Currie, Steven Y C Tong, David J McMillan, Mark R Davies
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis. Nature communications 15 (1) (2024)
Nicholas J Croucher, Joseph J Campo, Timothy Q Le, Jozelyn V Pablo, Christopher Hung, Andy A Teng, Claudia Turner, Francois H Nosten, Stephen D Bentley, Xiaowu Liang, Paul Turner, David Goldblatt
Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci. Nature communications 15 (1) (2024)
Nicholas J Croucher, Joseph J Campo, Timothy Q Le, Jozelyn V Pablo, Christopher Hung, Andy A Teng, Claudia Turner, Francois H Nosten, Stephen D Bentley, Xiaowu Liang, Paul Turner, David Goldblatt
Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci. Nature communications 15 (1) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Ouli Xie, Cameron Zachreson, Gerry Tonkin-Hill, David J Price, Jake A Lacey, Jacqueline M Morris, Malcolm I McDonald, Asha C Bowen, Philip M Giffard, Bart J Currie, Jonathan R Carapetis, Deborah C Holt, Stephen D Bentley, Mark R Davies, Steven Y C Tong
Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange. Nature communications 15 (1) (2024)
Nicholas J Croucher, Joseph J Campo, Timothy Q Le, Jozelyn V Pablo, Christopher Hung, Andy A Teng, Claudia Turner, Francois H Nosten, Stephen D Bentley, Xiaowu Liang, Paul Turner, David Goldblatt
Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci. Nature communications 15 (1) (2024)
Nicholas J Croucher, Joseph J Campo, Timothy Q Le, Jozelyn V Pablo, Christopher Hung, Andy A Teng, Claudia Turner, Francois H Nosten, Stephen D Bentley, Xiaowu Liang, Paul Turner, David Goldblatt
Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci. Nature communications 15 (1) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Ouli Xie, Cameron Zachreson, Gerry Tonkin-Hill, David J Price, Jake A Lacey, Jacqueline M Morris, Malcolm I McDonald, Asha C Bowen, Philip M Giffard, Bart J Currie, Jonathan R Carapetis, Deborah C Holt, Stephen D Bentley, Mark R Davies, Steven Y C Tong
Overlapping Streptococcus pyogenes and Streptococcus dysgalactiae subspecies equisimilis household transmission and mobile genetic element exchange. Nature communications 15 (1) (2024)
Ouli Xie, Jacqueline M Morris, Andrew J Hayes, Rebecca J Towers, Magnus G Jespersen, John A Lees, Nouri L Ben Zakour, Olga Berking, Sarah L Baines, Glen P Carter, Gerry Tonkin-Hill, Layla Schrieber, Liam McIntyre, Jake A Lacey, Taylah B James, Kadaba S Sriprakash, Scott A Beatson, Tadao Hasegawa, Phil Giffard, Andrew C Steer, Michael R Batzloff, Bernard W Beall, Marcos D Pinho, Mario Ramirez, Debra E Bessen, Gordon Dougan, Stephen D Bentley, Mark J Walker, Bart J Currie, Steven Y C Tong, David J McMillan, Mark R Davies
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis. Nature communications 15 (1) (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographical migration and fitness dynamics of Streptococcus pneumoniae. Nature (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographical migration and fitness dynamics of Streptococcus pneumoniae. Nature 631 (8020) (2024)
Ouli Xie, Jacqueline M Morris, Andrew J Hayes, Rebecca J Towers, Magnus G Jespersen, John A Lees, Nouri L Ben Zakour, Olga Berking, Sarah L Baines, Glen P Carter, Gerry Tonkin-Hill, Layla Schrieber, Liam McIntyre, Jake A Lacey, Taylah B James, Kadaba S Sriprakash, Scott A Beatson, Tadao Hasegawa, Phil Giffard, Andrew C Steer, Michael R Batzloff, Bernard W Beall, Marcos D Pinho, Mario Ramirez, Debra E Bessen, Gordon Dougan, Stephen D Bentley, Mark J Walker, Bart J Currie, Steven Y C Tong, David J McMillan, Mark R Davies
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis. Nature communications 15 (1) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research (2024)
Ouli Xie, Jacqueline M Morris, Andrew J Hayes, Rebecca J Towers, Magnus G Jespersen, John A Lees, Nouri L Ben Zakour, Olga Berking, Sarah L Baines, Glen P Carter, Gerry Tonkin-Hill, Layla Schrieber, Liam McIntyre, Jake A Lacey, Taylah B James, Kadaba S Sriprakash, Scott A Beatson, Tadao Hasegawa, Phil Giffard, Andrew C Steer, Michael R Batzloff, Bernard W Beall, Marcos D Pinho, Mario Ramirez, Debra E Bessen, Gordon Dougan, Stephen D Bentley, Mark J Walker, Bart J Currie, Steven Y C Tong, David J McMillan, Mark R Davies
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis. Nature communications 15 (1) (2024)
Nicholas J Croucher, Joseph J Campo, Timothy Q Le, Jozelyn V Pablo, Christopher Hung, Andy A Teng, Claudia Turner, Francois H Nosten, Stephen D Bentley, Xiaowu Liang, Paul Turner, David Goldblatt
Genomic and panproteomic analysis of the development of infant immune responses to antigenically-diverse pneumococci. Nature communications 15 (1) (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographical migration and fitness dynamics of Streptococcus pneumoniae. Nature 631 (8020) (2024)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographic migration and vaccine-induced fitness changes of Streptococcus pneumoniae . bioRxiv : the preprint server for biology (2023)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographic migration and vaccine-induced fitness changes of Streptococcus pneumoniae . bioRxiv : the preprint server for biology (2023)
Gemma G R Murray, A S Md Mukarram Hossain, Eric L Miller, Sebastian Bruchmann, Andrew J Balmer, Marta Matuszewska, Josephine Herbert, Nazreen F Hadjirin, Robert Mugabi, Ganwu Li, Maria Laura Ferrando, Isabela Maria Fernandes de Oliveira, Nguyen Trung Thanh, Phung L K Yen, Ho D Phuc, Aung Zaw Moe, Thiri Su Wai, Marcelo Gottschalk, Virginia Aragon, Peter Valentin-Weigand, Peter Mikael Helweg Heegaard, Manouk Vrieling, Min Thein Maw, Hnin Thidar Myint, Ye Tun Win, Ngo Thi Hoa, Stephen D Bentley, Maria J Clavijo, Jerry M Wells, Alexander W Tucker, Lucy A Weinert
The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs. Proceedings of the National Academy of Sciences of the United States of America 120 (47) (2023)
Sophie Belman, Noémie Lefrancq, Susan Nzenze, Sarah Downs, Mignon du Plessis, Stephanie W Lo, null null, Lesley McGee, Shabir Ahmed Madhi, Anne von Gottberg, Stephen D Bentley, Henrik Salje
Geographic migration and vaccine-induced fitness changes of Streptococcus pneumoniae . bioRxiv : the preprint server for biology (2023)
Chrispin Chaguza, Dorota Jamrozy, Merijn W Bijlsma, Taco W Kuijpers, Diederik van de Beek, Arie van de Ende, Stephen D Bentley
Population genomics of Group B Streptococcus reveals the genetics of neonatal disease onset and meningeal invasion. Nature communications 13 (1) (2022)
Gerry Q Tonkin-Hill, Clare Ling, Chrispin Chaguza, Susannah J Salter, Pattaraporn Hinfonthong, Elissavet Nikolaou, Natalie Tate, Andrzej Pastusiak, Claudia Turner, Claire Chewapreecha, Simon D W Frost, Jukka Corander, Nicholas J Croucher, Paul Turner, Stephen D Bentley
Pneumococcal within-host diversity during colonization, transmission and treatment. Nature microbiology 7 (11) (2022)
Anna Kaarina Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R Freitas, Carla Novais, Rebecca A Gladstone, Maiju E Pesonen, Rodrigo Meneses, Henri Pesonen, John A Lees, Dorota Jamrozy, Stephen D Bentley, Val F Lanza, Carmen Torres, Luisa Peixe, Teresa M Coque, Julian Parkhill, Anita C Schürch, Rob J L Willems, Jukka Corander
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era. Nature communications 12 (1) (2021)
Neil MacAlasdair, Maiju E Pesonen, Ola Brønstad Brynildsrud, Vegard Eldholm, Paul A Kristiansen, Jukka Corander, Dominique A Caugant, Stephen D Bentley
The effect of recombination on the evolution of a population of Neisseria meningitidis. Genome research (2021)
Sonja Lehtinen, Claire Chewapreecha, John A Lees, William P Hanage, Marc Lipsitch, Nicholas J Croucher, Stephen D Bentley, Paul Turner, Christophe Fraser, Rafal J Mostowy
Horizontal gene transfer rate is not the primary determinant of observed antibiotic resistance frequencies in Streptococcus pneumoniae. Science advances 6 (21) (2020)
Chrispin Chaguza, Madikay Senghore, Ebrima Bojang, Rebecca A Gladstone, Stephanie W Lo, Peggy-Estelle Tientcheu, Rowan E Bancroft, Archibald Worwui, Ebenezer Foster-Nyarko, Fatima Ceesay, Catherine Okoi, Lesley McGee, Keith P Klugman, Robert F Breiman, Michael R Barer, Richard A Adegbola, Martin Antonio, Stephen D Bentley, Brenda Anna Kwambana-Adams
Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation. Nature communications 11 (1) (2020)
Chrispin Chaguza, Marie Yang, Jennifer E Cornick, Mignon du Plessis, Rebecca A Gladstone, Brenda A Kwambana-Adams, Stephanie W Lo, Chinelo Ebruke, Gerry Q Tonkin-Hill, Chikondi Peno, Madikay Senghore, Stephen K Obaro, Sani Ousmane, Gerd Pluschke, Jean-Marc Collard, Betuel Sigaùque, Neil French, Keith P Klugman, Robert S Heyderman, Lesley McGee, Martin Antonio, Robert F Breiman, Anne von Gottberg, Dean B Everett, Aras Kadioglu, Stephen D Bentley
Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism. Communications biology 3 (1) (2020)
John A Lees, Simon R Harris, Gerry Q Tonkin-Hill, Rebecca A Gladstone, Stephanie W Lo, Jeffrey N Weiser, Jukka Corander, Stephen D Bentley, Nicholas J Croucher
Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome research 29 (2) (2019)

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Publication Activity (10 Years)

Top Topics

Top Venues

Stephen D Bentley