Jukka Corander (J Corander)

ORCID

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 40

Top Venues

Nature communications

Wellcome open research

Genome research

mBio

Wellcome Trust Sanger Institute

Stockholms Universitet (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

Wellcome Trust Sanger Institute May 01 2017

United Kingdom

Honorary Faculty Member :: Infection Genomics

University of Oslo Apr 01 2016

Norway

Professor :: Institute of Basic Medical Sciences

University of Helsinki Sep 01 2009

Finland

Professor :: Department of Mathematics and Statistics

Education History

Stockholms Universitet Sep 01 1995 - Jan 31 2000

Sweden

PHD :: Department of Statistics

Publications

Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Jessica K Calland, Maiju E Pesonen, Jai W Mehat, Ben Pascoe, David J Haydon, Paul S Wikramaratna, Barbara Lukasiewicz, Evangelos Mourkas, Matthew D Hitchings, Roberto M La Ragione, Philip Hammond, Timothy S Wallis, Jukka Corander, Samuel K Sheppard
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork. NPJ vaccines 9 (1) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research 34 (7) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research 34 (7) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Sophie Belman, Henri Pesonen, Nicholas J Croucher, Stephen D Bentley, Jukka Corander
Estimating between-country migration in pneumococcal populations. G3 (Bethesda, Md.) 14 (6) (2024)
Sreymom Pol, Teemu Kallonen, Tommi Mäklin, Poda Sar, Jill Hopkins, Sona Soeng, Thyl Miliya, Clare L Ling, Stephen D Bentley, Jukka Corander, Paul Turner
Exploring the pediatric nasopharyngeal bacterial microbiota with culture-based MALDI-TOF mass spectrometry and targeted metagenomic sequencing. mBio 15 (6) (2024)
Juri Kuronen, Samuel T Horsfield, Anna Kaarina Pöntinen, Sudaraka Mallawaarachchi, Sergio Arredondo-Alonso, Harry A Thorpe, Rebecca A Gladstone, Rob J L Willems, Stephen D Bentley, Nicholas J Croucher, Johan Pensar, John A Lees, Gerry Q Tonkin-Hill, Jukka Corander
Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs. Genome research (2024)
Jessica K Calland, Maiju E Pesonen, Jai W Mehat, Ben Pascoe, David J Haydon, Paul S Wikramaratna, Barbara Lukasiewicz, Evangelos Mourkas, Matthew D Hitchings, Roberto M La Ragione, Philip Hammond, Timothy S Wallis, Jukka Corander, Samuel K Sheppard
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork. NPJ vaccines 9 (1) (2024)
Jessica K Calland, Maiju E Pesonen, Jai W Mehat, Ben Pascoe, David J Haydon, Paul S Wikramaratna, Barbara Lukasiewicz, Evangelos Mourkas, Matthew D Hitchings, Roberto M La Ragione, Philip Hammond, Timothy S Wallis, Jukka Corander, Samuel K Sheppard
Genomic tailoring of autogenous poultry vaccines to reduce Campylobacter from farm to fork. NPJ vaccines 9 (1) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
Tamim Khawaja, Tommi Mäklin, Teemu Kallonen, Rebecca A Gladstone, Anna Kaarina Pöntinen, Sointu Mero, Harry A Thorpe, Ørjan Samuelsen, Julian Parkhill, Mateen Izhar, M Waheed Akhtar, Jukka Corander, Anu Kantele
Deep sequencing of Escherichia coli exposes colonisation diversity and impact of antibiotics in Punjab, Pakistan. Nature communications 15 (1) (2024)
The Tien Mai, John A Lees, Rebecca A Gladstone, Jukka Corander
Inferring the heritability of bacterial traits in the era of machine learning. Bioinformatics advances 3 (1) (2023)
The Tien Mai, John A Lees, Rebecca A Gladstone, Jukka Corander
Inferring the heritability of bacterial traits in the era of machine learning. Bioinformatics advances 3 (1) (2023)
Kesorn Angchagun, Phumrapee Boonklang, Chalita Chomkatekaew, Sukritpong Pakdeerat, Gumphol Wongsuwan, Premjit Amornchai, Vanaporn Wuthiekanun, Salwaluk Panapipat, Thatsanun Ngernseng, Naomi Waithira, Steve Walton, Direk Limmathurotsakul, Anoree Surawong, Suwatthiya Siriboon, Parinya Chamnan, Narisara Chantratita, Susanna J Dunachie, Jukka Corander, Emma E Davenport, Julian Knight, Julian Parkhill, Sharon J Peacock, Nicholas R Thomson, Nicholas Philip John Day, Claire Chewapreecha
BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection. Wellcome open research 8 (2023)
Sergio Arredondo-Alonso, George Blundell-Hunter, Zuyi Fu, Rebecca A Gladstone, Alfred Fillol-Salom, Jessica Loraine, Elaine Cloutman-Green, Pål J Johnsen, Ørjan Samuelsen, Anna Kaarina Pöntinen, François Cléon, Susana Chavez-Bueno, Miguel A De La Cruz, Miguel A Ares, Manivanh Vongsouvath, Agnieszka Chmielarczyk, Carolyne Horner, Nigel Klein, Alan McNally, Joice N Reis, José R Penadés, Nicholas R Thomson, Jukka Corander, Peter W Taylor, Alex J McCarthy
Evolutionary and functional history of the Escherichia coli K1 capsule. Nature communications 14 (1) (2023)
Chrispin Chaguza, Anna Kaarina Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Ana R Freitas, Carla Novais, Carmen Torres, Stephen D Bentley, Luisa Peixe, Teresa M Coque, Rob J L Willems, Jukka Corander
The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection. Microbiology spectrum (2023)
John A Lees, Gerry Tonkin-Hill, Zhirong Yang, Jukka Corander
Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation. Philosophical transactions of the Royal Society of London. Series B, Biological sciences 377 (1861) (2022)
Sergio Arredondo-Alonso, Anna Kaarina Pöntinen, François Cléon, Rebecca A Gladstone, Anita C Schürch, Pål J Johnsen, Ørjan Samuelsen, Jukka Corander
A high-throughput multiplexing and selection strategy to complete bacterial genomes. GigaScience 10 (12) (2022)
Gerry Q Tonkin-Hill, Clare Ling, Chrispin Chaguza, Susannah J Salter, Pattaraporn Hinfonthong, Elissavet Nikolaou, Natalie Tate, Andrzej Pastusiak, Claudia Turner, Claire Chewapreecha, Simon D W Frost, Jukka Corander, Nicholas J Croucher, Paul Turner, Stephen D Bentley
Pneumococcal within-host diversity during colonization, transmission and treatment. Nature microbiology 7 (11) (2022)
Tommi Mäklin, Harry A Thorpe, Anna Kaarina Pöntinen, Rebecca A Gladstone, Yan Shao, Maiju E Pesonen, Alan McNally, Pål J Johnsen, Ørjan Samuelsen, Trevor D Lawley, Antti Honkela, Jukka Corander
Strong pathogen competition in neonatal gut colonisation. Nature communications 13 (1) (2022)
Anna Kaarina Pöntinen, Janetta Top, Sergio Arredondo-Alonso, Gerry Tonkin-Hill, Ana R Freitas, Carla Novais, Rebecca A Gladstone, Maiju E Pesonen, Rodrigo Meneses, Henri Pesonen, John A Lees, Dorota Jamrozy, Stephen D Bentley, Val F Lanza, Carmen Torres, Luisa Peixe, Teresa M Coque, Julian Parkhill, Anita C Schürch, Rob J L Willems, Jukka Corander
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era. Nature communications 12 (1) (2021)
Leonardos Mageiros, Guillaume Méric, Sion C Bayliss, Johan Pensar, Ben Pascoe, Evangelos Mourkas, Jessica K Calland, Koji Yahara, Susan Murray, Thomas S Wilkinson, Lisa K Williams, Matthew D Hitchings, Jonathan Porter, Kirsty Kemmett, Edward J Feil, Keith A Jolley, Nicola J Williams, Jukka Corander, Samuel K Sheppard
Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature communications 12 (1) (2021)
Jessica K Calland, Ben Pascoe, Sion C Bayliss, Evangelos Mourkas, Elvire Berthenet, Harry A Thorpe, Matthew D Hitchings, Edward J Feil, Jukka Corander, Martin J Blaser, Daniel Falush, Samuel K Sheppard
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages. PLoS genetics 17 (9) (2021)
Leonardos Mageiros, Guillaume Méric, Sion C Bayliss, Johan Pensar, Ben Pascoe, Evangelos Mourkas, Jessica K Calland, Koji Yahara, Susan Murray, Thomas S Wilkinson, Lisa K Williams, Matthew D Hitchings, Jonathan Porter, Kirsty Kemmett, Edward J Feil, Keith A Jolley, Nicola J Williams, Jukka Corander, Samuel K Sheppard
Genome evolution and the emergence of pathogenicity in avian Escherichia coli. Nature communications 12 (1) (2021)
Neil MacAlasdair, Maiju E Pesonen, Ola Brønstad Brynildsrud, Vegard Eldholm, Paul A Kristiansen, Jukka Corander, Dominique A Caugant, Stephen D Bentley
The effect of recombination on the evolution of a population of Neisseria meningitidis. Genome research (2021)
Tommi Mäklin, Teemu Kallonen, Sophia David, Christine J Boinett, Ben Pascoe, Guillaume Méric, David M Aanensen, Edward J Feil, Stephen Baker, Julian Parkhill, Samuel K Sheppard, Jukka Corander, Antti Honkela
High-resolution sweep metagenomics using fast probabilistic inference. Wellcome open research 5 (2021)
Tommi Mäklin, Teemu Kallonen, Sophia David, Christine J Boinett, Ben Pascoe, Guillaume Méric, David M Aanensen, Edward J Feil, Stephen Baker, Julian Parkhill, Samuel K Sheppard, Jukka Corander, Antti Honkela
High-resolution sweep metagenomics using fast probabilistic inference. Wellcome open research 5 (2020)
Taj Azarian, Pamela P Martinez, Brian J Arnold, Xueting Qiu, Lindsay R Grant, Jukka Corander, Christophe Fraser, Nicholas J Croucher, Laura L Hammitt, Raymond Reid, Mathuram Santosham, Robert C Weatherholtz, Stephen D Bentley, Katherine L O'Brien, Marc Lipsitch, William P Hanage
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae. PLoS biology 18 (10) (2020)
Jarno Lintusaari, Paul Blomstedt, Brittany Rose, Tuomas Sivula, Michael U Gutmann, Samuel Kaski, Jukka Corander
Resolving outbreak dynamics using approximate Bayesian computation for stochastic birth-death models. Wellcome open research 4 (2019)
Jan Kokko, Ulpu Remes, Owen Thomas, Henri Pesonen, Jukka Corander
PYLFIRE: Python implementation of likelihood-free inference by ratio estimation. Wellcome open research 4 (2019)
John A Lees, Simon R Harris, Gerry Q Tonkin-Hill, Rebecca A Gladstone, Stephanie W Lo, Jeffrey N Weiser, Jukka Corander, Stephen D Bentley, Nicholas J Croucher
Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome research 29 (2) (2019)
Álvaro Chiner-Oms, Leonor Sánchez-Busó, Jukka Corander, Sébastien Gagneux, Simon R Harris, D Young, Fernando Gonzáles-Candelas, Iñaki Comas
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex. Science advances 5 (6) (2019)
Gerry Q Tonkin-Hill, John A Lees, Stephen D Bentley, Simon D W Frost, Jukka Corander
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS. Wellcome open research 3 (2018)
Guillaume Méric, Leonardos Mageiros, Johan Pensar, Maisem Laabei, Koji Yahara, Ben Pascoe, Nattinee Kittiwan, Phacharaporn Tadee, Virginia Post, Sarah Lamble, Rory Bowden, James E Bray, Mario Morgenstern, Keith A Jolley, Martin Christopher James Maiden, Edward J Feil, Xavier Didelot, Maria Miragaia, Herminia de Lencastre, Thomas Fintan Moriarty, Holger Rohde, Ruth Massey, Dietrich Mack, Jukka Corander, Samuel K Sheppard
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis. Nature communications 9 (1) (2018)

Jukka Corander.css-eqlu8i{font-size:small;padding-left:4px;} (J Corander)

Publication Activity (10 Years)

Top Topics

Top Venues

Jukka Corander (J Corander)