Thomas Dandekar

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2014-2023
Publications (10 Years): 48

Top Topics

Herpes Simplex Virus

Network Analysis

Oxidative Stress

Top Venues

International journal of molecular sciences

PLoS computational biology

Molecules (Basel, Switzerland)

This page only lists publications with an associated author ORCID identifier.

Publications

Chao Han, Pengxuan Ren, Medina Mamtimin, Linus Kruk, Edita Sarukhanyan, Chenyu Li, Hans-Johachim Anders, Thomas Dandekar, Irena Krueger, Margitta Elvers, Silvia Goebel, Kristin Adler, Goetz Muench, Thomas Gudermann, Attila Braun, Elmina Mammadova-Bach
Minimal Collagen-Binding Epitope of Glycoprotein VI in Human and Mouse Platelets. Biomedicines 11 (2) (2023)
Chao Han, Pengxuan Ren, Medina Mamtimin, Linus Kruk, Edita Sarukhanyan, Chenyu Li, Hans-Johachim Anders, Thomas Dandekar, Irena Krueger, Margitta Elvers, Silvia Goebel, Kristin Adler, Goetz Muench, Thomas Gudermann, Attila Braun, Elmina Mammadova-Bach
Minimal Collagen-Binding Epitope of Glycoprotein VI in Human and Mouse Platelets. Biomedicines 11 (2) (2023)
Chao Han, Pengxuan Ren, Medina Mamtimin, Linus Kruk, Edita Sarukhanyan, Chenyu Li, Hans-Johachim Anders, Thomas Dandekar, Irena Krueger, Margitta Elvers, Silvia Goebel, Kristin Adler, Goetz Muench, Thomas Gudermann, Attila Braun, Elmina Mammadova-Bach
Minimal Collagen-Binding Epitope of Glycoprotein VI in Human and Mouse Platelets. Biomedicines 11 (2) (2023)
Anne-Katrin Rohlfing, Kyra Kolb, Manuel Sigle, Melanie Ziegler, Alexander Bild, Patrick Münzer, Jessica Sudmann, Valerie Dicenta, Tobias Harm, Mailin-Christin Manke, Sascha Geue, Marcel Kremser, Madhumita Chatterjee, Chunguang Liang, Hendrik von Eysmondt, Thomas Dandekar, David Heinzmann, Manina Günter, Saskia von Ungern-Sternberg, Manuela Büttcher, Tatsiana Castor, Stine Mencl, Friederike Langhauser, Katharina S Kommoss, Diyaa Ashour, Mustafa Caglar Beker, Michael Lämmerhofer, Stella E Autenrieth, Tilman E Schäffer, Stefan A Laufer, Paulina Szklanna, Patricia Maguire, Mathias F Heikenwälder, Karin Anne Lydia Müller, Dirk M Hermann, Ertugrul Kilic, Ralf Stumm, Gustavo Ramos, Christoph Kleinschnitz, Oliver Borst, Harald F Langer, Dominik Rath, Meinrad Paul Gawaz
ACKR3 regulates platelet activation and ischemia-reperfusion tissue injury. Nature communications 13 (1) (2022)
Antonia S Rackevei, Alyssa R Borges, Markus Engstler, Thomas Dandekar, Matthias Wolf
About the Analysis of 18S rDNA Sequence Data from Trypanosomes in Barcoding and Phylogenetics: Tracing a Continuation Error Occurring in the Literature. Biology 11 (11) (2022)
Shishir K Gupta, Rashmi Minocha, Prithivi Jung Thapa, Mugdha Srivastava, Thomas Dandekar
Role of the Pangolin in Origin of SARS-CoV-2: An Evolutionary Perspective. International journal of molecular sciences 23 (16) (2022)
Aylin Caliskan, Samantha A W Crouch, Sara Giddins, Thomas Dandekar, Seema Dangwal
Progeria and Aging-Omics Based Comparative Analysis. Biomedicines 10 (10) (2022)
Moustafa Fathy, Sahar M Saad Eldin, Muhammad Naseem, Thomas Dandekar, Eman M Othman
Cytokinins: Wide-Spread Signaling Hormones from Plants to Humans with High Medical Potential. Nutrients 14 (7) (2022)
Edita Sarukhanyan, Tipack Ayothyapattanam Shanmugam, Thomas Dandekar
In Silico Studies Reveal Peramivir and Zanamivir as an Optimal Drug Treatment Even If H7N9 Avian Type Influenza Virus Acquires Further Resistance. Molecules (Basel, Switzerland) 27 (18) (2022)
Rania Abdel-Latif, Moustafa Fathy, Hend Ali Anwar, Muhammad Naseem, Thomas Dandekar, Eman M Othman
Cisplatin-Induced Reproductive Toxicity and Oxidative Stress: Ameliorative Effect of Kinetin. Antioxidants (Basel, Switzerland) 11 (5) (2022)
Moustafa Fathy, Mostafa A Darwish, Al-Shaimaa M Abdelhamid, Gehad M Alrashedy, Othman Ali Othman, Muhammad Naseem, Thomas Dandekar, Eman M Othman
Kinetin Ameliorates Cisplatin-Induced Hepatotoxicity and Lymphotoxicity via Attenuating Oxidative Damage, Cell Apoptosis and Inflammation in Rats. Biomedicines 10 (7) (2022)
Tim Breitenbach, Matthias Jürgen Schmitt, Thomas Dandekar
Optimization of synthetic molecular reporters for a mesenchymal glioblastoma transcriptional program by integer programing. Bioinformatics (Oxford, England) 38 (17) (2022)
Stefan Loroch, Dominik Kopczynski, Adriana C Schneider, Cornelia Schumbrutzki, Ingo Feldmann, Eleftherios Panagiotidis, Yvonne Reinders, Roman Sakson, Fiorella A Solari, Alicia Vening, Frauke Swieringa, Johan W M Heemskerk, Maria Grandoch, Thomas Dandekar, Albert Sickmann
Toward Zero Variance in Proteomics Sample Preparation: Positive-Pressure FASP in 96-Well Format (PF96) Enables Highly Reproducible, Time- and Cost-Efficient Analysis of Sample Cohorts. Journal of proteome research 21 (4) (2022)
Franziska Karl, Chunguang Liang, Romy Boettcher-Loschinski, Andrej Stoll, Cindy Sheree Flamann, Silja Richter, Christopher Lischer, Simon Völkl, Benedikt Jacobs, Martin Böttcher, Regina Jitschin, Heiko Bruns, Thomas Fischer, Ernst Holler, Wolf Roesler, Thomas Dandekar, Andreas Mackensen, Dimitrios Mougiakakos
Oxidative DNA Damage in Reconstituting T-cells is Associated with Relapse and Inferior Survival Following Allo-SCT. Blood (2022)
Gonzalo Manuel Sanchez, Tugce Ceren Incedal, Juan Prada, Paul O'Callaghan, Oleg Dyachok, Santiago Echeverry, Özge Dumral, Phuoc My Nguyen, Beichen Xie, Sebastian Barg, Johan Kreuger, Thomas Dandekar, Olof Idevall-Hagren
The β-cell primary cilium is an autonomous Ca2+ compartment for paracrine GABA signaling. The Journal of cell biology 222 (1) (2022)
Franziska Karl, Chunguang Liang, Romy Boettcher-Loschinski, Andrej Stoll, Cindy Sheree Flamann, Silja Richter, Christopher Lischer, Simon Völkl, Benedikt Jacobs, Martin Böttcher, Regina Jitschin, Heiko Bruns, Thomas Fischer, Ernst Holler, Wolf Roesler, Thomas Dandekar, Andreas Mackensen, Dimitrios Mougiakakos
Oxidative DNA Damage in Reconstituting T-cells is Associated with Relapse and Inferior Survival Following Allo-SCT. Blood (2022)
Matthias Peindl, Claudia Göttlich, Samantha Crouch, Niklas Hoff, Tamara Lüttgens, Franziska Schmitt, Jesús Guillermo Nieves Pereira, Celina May, Anna Schliermann, Corinna Kronenthaler, Danjouma Cheufou, Simone Reu-Hofer, Andreas Rosenwald, Elena Weigl, Thorsten Walles, Julia Schueler, Thomas Dandekar, Sarah Nietzer, Gudrun Dandekar
EMT, Stemness, and Drug Resistance in Biological Context: A 3D Tumor Tissue/In Silico Platform for Analysis of Combinatorial Treatment in NSCLC with Aggressive KRAS-Biomarker Signatures. Cancers 14 (9) (2022)
Shishir K Gupta, Mugdha Srivastava, Özge Osmanoglu, Zhuofei Xu, Axel A Brakhage, Thomas Dandekar
Aspergillus fumigatus versus Genus Aspergillus: Conservation, Adaptive Evolution and Specific Virulence Genes. Microorganisms 9 (10) (2021)
Kunkun Li, Juan Prada, Daniel Santa Cruz Damineli, Anja Liese, Tina Romeis, Thomas Dandekar, José A Feijó, Rainer Hedrich, Kai Robert Konrad
An optimized genetically encoded dual reporter for simultaneous ratio imaging of Ca2+ and H+ reveals new insights into ion signaling in plants. The New phytologist 230 (6) (2021)
Eman M Othman, Amany A Bekhit, Mohamed A Anany, Thomas Dandekar, Hanan M Ragab, Ahmed Wahid
Design, Synthesis, and Anticancer Screening for Repurposed Pyrazolo[3,4-d]pyrimidine Derivatives on Four Mammalian Cancer Cell Lines. Molecules (Basel, Switzerland) 26 (10) (2021)
Juliane Wunder, Daniela Pemp, Alexander Cecil, Maryam Mahdiani, René Hauptstein, Katja Schmalbach, Leo N Geppert, Katja Ickstadt, Harald L Esch, Thomas Dandekar, Leane Lehmann
Influence of breast cancer risk factors on proliferation and DNA damage in human breast glandular tissues: role of intracellular estrogen levels, oxidative stress and estrogen biotransformation. Archives of toxicology 96 (2) (2021)
Christine Dunker, Melanie Polke, Bianca Schulze-Richter, Katja Schubert, Sven Rudolphi, A Elisabeth Gressler, Tony Pawlik, Juan P Prada Salcedo, Maria Joanna Niemiec, Silvia Slesiona-Künzel, Marc Swidergall, Ronny Martin, Thomas Dandekar, Ilse Denise Jacobsen
Rapid proliferation due to better metabolic adaptation results in full virulence of a filament-deficient Candida albicans strain. Nature communications 12 (1) (2021)
Taghreed S Alnusaire, Ahmed M Sayed, Abeer H Elmaidomy, Mohammad M Al-Sanea, Sarah M Albogami, Mha Albqmi, Bassam F Alowaiesh, Ehab M Mostafa, Arafa Musa, Khayrya A Youssif, Hesham Refaat, Eman M Othman, Thomas Dandekar, Eman Alaaeldin, Mohammed M Ghoneim, Usama Ramadan Abdelmohsen
An In Vitro and In Silico Study of the Enhanced Antiproliferative and Pro-Oxidant Potential of Olea europaea L. cv. Arbosana Leaf Extract via Elastic Nanovesicles (Spanlastics). Antioxidants (Basel, Switzerland) 10 (12) (2021)
Akinyemi M Fasemore, Andrea Helbich, Mathias C Walter, Thomas Dandekar, Gilles Vergnaud, Konrad U Förstner, Dimitrios Frangoulidis
CoxBase: an Online Platform for Epidemiological Surveillance, Visualization, Analysis, and Typing of Coxiella burnetii Genomic Sequences. mSystems 6 (6) (2021)
Juan Pablo Prada, Gaby Wangorsch, Kirstin Kucka, Isabell Lang, Thomas Dandekar, Harald Wajant
A systems-biology model of the tumor necrosis factor (TNF) interactions with TNF receptor 1 and 2. Bioinformatics (Oxford, England) 37 (5) (2021)
Chunguang Liang, Elena Bencurova, Eric Psota, Priya Neurgaonkar, Martina Prelog, Carsten Scheller, Thomas Dandekar
Population-Predicted MHC Class II Epitope Presentation of SARS-CoV-2 Structural Proteins Correlates to the Case Fatality Rates of COVID-19 in Different Countries. International journal of molecular sciences 22 (5) (2021)
Eman M Othman, Moustafa Fathy, Amany Abdlrehim Bekhit, Abdel-Razik H Abdel-Razik, Arshad Jamal, Yousef Nazzal, Shabana Shams, Thomas Dandekar, Muhammad Naseem
Modulatory and Toxicological Perspectives on the Effects of the Small Molecule Kinetin. Molecules (Basel, Switzerland) 26 (3) (2021)
Shishir K Gupta, Mugdha Srivastava, Rashmi Minocha, Aman Akash, Seema Dangwal, Thomas Dandekar
Alveolar Regeneration in COVID-19 Patients: A Network Perspective. International journal of molecular sciences 22 (20) (2021)
Chunguang Liang, Ana B Rios-Miguel, Marcel Jarick, Priya Neurgaonkar, Myriam Girard, Patrice François, Jacques Schrenzel, Eslam S Ibrahim, Knut Ohlsen, Thomas Dandekar
Staphylococcusaureus Transcriptome Data and Metabolic Modelling Investigate the Interplay of Ser/Thr Kinase PknB, Its Phosphatase Stp, the glmR/yvcK Regulon and the cdaA Operon for Metabolic Adaptation. Microorganisms 9 (10) (2021)
Shishir K Gupta, Mugdha Srivastava, Özge Osmanoglu, Thomas Dandekar
Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs. Scientific reports 10 (1) (2020)
Adam W Whisnant, Christopher S Jürges, Thomas Hennig, Emanuel Wyler, Bhupesh Kumar Prusty, Andrzej J Rutkowski, Anne L'hernault, Lara Djakovic, Margarete Göbel, Kristina Döring, Jennifer Menegatti, Robin Antrobus, Nicholas J Matheson, Florian W H Künzig, Guido Mastrobuoni, Chris Bielow, Stefan Kempa, Chunguang Liang, Thomas Dandekar, Ralf Zimmer, Markus Landthaler, Friedrich Grässer, Paul J Lehner, Caroline C Friedel, Florian Erhard, Lars Dölken
Integrative functional genomics decodes herpes simplex virus 1. Nature communications 11 (1) (2020)
Muhammad Naseem, Özge Osmanoğlu, Martin Kaltdorf, Afnan Ali M A Alblooshi, Jibran Iqbal, Fares M Howari, Mugdha Srivastava, Thomas Dandekar
Integrated Framework of the Immune-Defense Transcriptional Signatures in the Arabidopsis Shoot Apical Meristem. International journal of molecular sciences 21 (16) (2020)
Felicitas Schneider, Alan Horowitz, Klaus-Peter Lesch, Thomas Dandekar
Delaying memory decline: different options and emerging solutions. Translational psychiatry 10 (1) (2020)
Johannes Balkenhol, Kristin V Kaltdorf, Elmina Mammadova-Bach, Attila Braun, Bernhard Nieswandt, Marcus Dittrich, Thomas Dandekar
Comparison of the central human and mouse platelet signaling cascade by systems biological analysis. BMC genomics 21 (1) (2020)
Anna Grebinyk, Svitlana Prylutska, Anatoliy Buchelnikov, Nina Tverdokhleb, Sergii Grebinyk, Maxim P Evstigneev, Olga Matyshevska, Vsevolod Cherepanov, Yuriy Prylutskyy, Valeriy Yashchuk, Anton Naumovets, Uwe Ritter, Thomas Dandekar, Marcus Frohme
C60 Fullerene as an Effective Nanoplatform of Alkaloid Berberine Delivery into Leukemic Cells. Pharmaceutics 11 (11) (2019)
Moustafa Fathy, Michael Atef Fawzy, Henning Hintzsche, Toshio Nikaido, Thomas Dandekar, Eman M Othman
Eugenol Exerts Apoptotic Effect and Modulates the Sensitivity of HeLa Cells to Cisplatin and Radiation. Molecules (Basel, Switzerland) 24 (21) (2019)
Bashir A Akhoon, Shishir K Gupta, Sudeep Tiwari, Laxmi Rathor, Aakanksha Pant, Nivedita Singh, Shailendra K Gupta, Thomas Dandekar, Rakesh Pandey
C. elegans protein interaction network analysis probes RNAi validated pro-longevity effect of nhr-6, a human homolog of tumor suppressor Nr4a1. Scientific reports 9 (1) (2019)
Tim Breitenbach, Kristina Lorenz, Thomas Dandekar
How to Steer and Control ERK and the ERK Signaling Cascade Exemplified by Looking at Cardiac Insufficiency. International journal of molecular sciences 20 (9) (2019)
Anna Grebinyk, Svitlana Prylutska, Oksana Chepurna, Sergii Grebinyk, Yuriy Prylutskyy, Uwe Ritter, Tymish Y Ohulchanskyy, Olga Matyshevska, Thomas Dandekar, Marcus Frohme
Synergy of Chemo- and Photodynamic Therapies with C60 Fullerene-Doxorubicin Nanocomplex. Nanomaterials (Basel, Switzerland) 9 (11) (2019)
Tim Breitenbach, Chunguang Liang, Niklas Beyersdorf, Thomas Dandekar
Analyzing pharmacological intervention points: A method to calculate external stimuli to switch between steady states in regulatory networks. PLoS computational biology 15 (7) (2019)
Silviu Sbiera, Meik Kunz, Isabel Weigand, Timo Deutschbein, Thomas Dandekar, Fassnacht Martin
The New Genetic Landscape of Cushing's Disease: Deubiquitinases in the Spotlight. Cancers 11 (11) (2019)
Elena Bencurova, Shishir K Gupta, Edita Sarukhanyan, Thomas Dandekar
Identification of Antifungal Targets Based on Computer Modeling. Journal of fungi (Basel, Switzerland) 4 (3) (2018)
Juan Prada, Manju Sasi, Corinna Martin, Sibylle Jablonka, Thomas Dandekar, Robert Blum
An open source tool for automatic spatiotemporal assessment of calcium transients and local 'signal-close-to-noise' activity in calcium imaging data. PLoS computational biology 14 (3) (2018)
Kristin Verena Kaltdorf, Maria Theiss, Sebastian Matthias Markert, Mei Zhen, Thomas Dandekar, Christian Stigloher, Philip Kollmannsberger
Automated classification of synaptic vesicles in electron tomograms of C. elegans using machine learning. PloS one 13 (10) (2018)
Martin F Orth, Julia S Gerke, Thomas Knösel, Annelore Altendorf-Hofmann, Julian Musa, Rebeca Alba-Rubio, Stefanie Stein, Tilman L B Hölting, Florencia Cidre-Aranaz, Laura Romero-Pérez, Marlene Dallmayer, Michaela C Baldauf, Aruna Marchetto, Giuseppina Sannino, Maximilian M L Knott, Fabienne Wehweck, Shunya Ohmura, Jing Li, Michiyuki Hakozaki, Thomas Kirchner, Thomas Dandekar, Elke Butt, Thomas G P Grünewald
Functional genomics identifies AMPD2 as a new prognostic marker for undifferentiated pleomorphic sarcoma. International journal of cancer 144 (4) (2018)
Kristin Verena Kaltdorf, Katja Schulze, Frederik Helmprobst, Philip Kollmannsberger, Thomas Dandekar, Christian Stigloher
FIJI Macro 3D ART VeSElecT: 3D Automated Reconstruction Tool for Vesicle Structures of Electron Tomograms. PLoS computational biology 13 (1) (2017)
Jan Ewald, Martin Bartl, Thomas Dandekar, Christoph Kaleta
Optimality principles reveal a complex interplay of intermediate toxicity and kinetic efficiency in the regulation of prokaryotic metabolism. PLoS computational biology 13 (2) (2017)
Eman M Othman, Muhammed Naseem, Eman Awad, Thomas Dandekar, Helga Stopper
The Plant Hormone Cytokinin Confers Protection against Oxidative Stress in Mammalian Cells. PloS one 11 (12) (2016)
Sergey Shityakov, Carola Förster, Axel Rethwilm, Thomas Dandekar
Evaluation and prediction of the HIV-1 central polypurine tract influence on foamy viral vectors to transduce dividing and growth-arrested cells. TheScientificWorldJournal 2014 (2014)