Florian Erhard

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 38

Top Topics

Gene Expression

Top Venues

Nature communications

Nucleic acids research

bioRxiv : the preprint server for biology

This page only lists publications with an associated author ORCID identifier.

Publications

Alice Felicitas Rein, Chris David Lauruschkat, Ihsan Muchsin, Carolin Köchel, Sabine Tischer-Zimmermann, Liane Bauersfeld, Annika Nelde, Maren Lübke, Bhupesh Kumar Prusty, Andreas Schlosser, Anne Halenius, Britta Eiz-Vesper, Lars Dölken, Götz Ulrich Grigoleit, Hermann Einsele, Florian Erhard, Sabrina Kraus
Identification of novel canonical and cryptic HCMV-specific T-cell epitopes for HLA-A∗03 and HLA-B∗15 via peptide-PRISM. Blood advances 8 (3) (2024)
Bibiana Costa, Jennifer Becker, Tobias Krammer, Felix Mulenge, Verónica Durán, Andreas Pavlou, Olivia Luise Gern, Xiaojing Chu, Yang Li, Luka Čičin Šain, Britta Eiz-Vesper, Martin Messerle, Lars Dölken, Antoine-Emmanuel Saliba, Florian Erhard, Ulrich Kalinke
Human cytomegalovirus exploits STING signaling and counteracts IFN/ISG induction to facilitate infection of dendritic cells. Nature communications 15 (1) (2024)
Chris David Lauruschkat, Ihsan Muchsin, Alice Felicitas Rein, Florian Erhard, Denise Grathwohl, Lars Dölken, Carolin Köchel, Anne Nehmer, Christine Susanne Falk, Götz Ulrich Grigoleit, Hermann Einsele, Sebastian Wurster, Sabrina Kraus
Impaired T cells and "memory-like" NK-cell reconstitution is linked to late-onset HCMV reactivation after letermovir cessation. Blood advances 8 (11) (2024)
Lior Fishman, Avani Modak, Gal Nechooshtan, Talya Razin, Florian Erhard, Aviv Regev, Jeffrey A Farrell, Michal Rabani
Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq. Nature communications 15 (1) (2024)
Bibiana Costa, Jennifer Becker, Tobias Krammer, Felix Mulenge, Verónica Durán, Andreas Pavlou, Olivia Luise Gern, Xiaojing Chu, Yang Li, Luka Čičin Šain, Britta Eiz-Vesper, Martin Messerle, Lars Dölken, Antoine-Emmanuel Saliba, Florian Erhard, Ulrich Kalinke
Human cytomegalovirus exploits STING signaling and counteracts IFN/ISG induction to facilitate infection of dendritic cells. Nature communications 15 (1) (2024)
Lior Fishman, Avani Modak, Gal Nechooshtan, Talya Razin, Florian Erhard, Aviv Regev, Jeffrey A Farrell, Michal Rabani
Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq. Nature communications 15 (1) (2024)
Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh K Prusty, Florian Erhard
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. Nucleic acids research 52 (7) (2024)
Bibiana Costa, Jennifer Becker, Tobias Krammer, Felix Mulenge, Verónica Durán, Andreas Pavlou, Olivia Luise Gern, Xiaojing Chu, Yang Li, Luka Čičin Šain, Britta Eiz-Vesper, Martin Messerle, Lars Dölken, Antoine-Emmanuel Saliba, Florian Erhard, Ulrich Kalinke
Human cytomegalovirus exploits STING signaling and counteracts IFN/ISG induction to facilitate infection of dendritic cells. Nature communications 15 (1) (2024)
Lior Fishman, Avani Modak, Gal Nechooshtan, Talya Razin, Florian Erhard, Aviv Regev, Jeffrey A Farrell, Michal Rabani
Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq. Nature communications 15 (1) (2024)
Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh K Prusty, Florian Erhard
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. Nucleic acids research 52 (7) (2024)
Alice Felicitas Rein, Chris David Lauruschkat, Ihsan Muchsin, Carolin Köchel, Sabine Tischer-Zimmermann, Liane Bauersfeld, Annika Nelde, Maren Lübke, Bhupesh Kumar Prusty, Andreas Schlosser, Anne Halenius, Britta Eiz-Vesper, Lars Dölken, Götz Ulrich Grigoleit, Hermann Einsele, Florian Erhard, Sabrina Kraus
Identification of novel canonical and cryptic HCMV-specific T-cell epitopes for HLA-A∗03 and HLA-B∗15 via peptide-PRISM. Blood advances 8 (3) (2024)
Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh K Prusty, Florian Erhard
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. Nucleic acids research (2024)
Alice Felicitas Rein, Chris David Lauruschkat, Ihsan Muchsin, Carolin Köchel, Sabine Tischer-Zimmermann, Liane Bauersfeld, Annika Nelde, Maren Lübke, Bhupesh Kumar Prusty, Andreas Schlosser, Anne Halenius, Britta Eiz-Vesper, Lars Dölken, Götz Ulrich Grigoleit, Hermann Einsele, Florian Erhard, Sabrina Kraus
Identification of novel canonical and cryptic HCMV-specific T-cell epitopes for HLA-A∗03 and HLA-B∗15 via peptide-PRISM. Blood advances 8 (3) (2024)
Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh K Prusty, Florian Erhard
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. Nucleic acids research 52 (7) (2024)
Chris David Lauruschkat, Ihsan Muchsin, Alice Felicitas Rein, Florian Erhard, Denise Grathwohl, Lars Dölken, Carolin Köchel, Anne Nehmer, Christine Susanne Falk, Götz Ulrich Grigoleit, Hermann Einsele, Sebastian Wurster, Sabrina Kraus
Impaired T and "memory-like" NK-cell reconstitution is linked to late-onset HCMV reactivation after letermovir cessation. Blood advances (2024)
Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh K Prusty, Florian Erhard
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. Nucleic acids research 52 (7) (2024)
Kevin Berg, Manivel Lodha, Isabel Delazer, Karolina Bartosik, Yilliam Cruz Garcia, Thomas Hennig, Elmar Wolf, Lars Dölken, Alexandra Lusser, Bhupesh K Prusty, Florian Erhard
Correcting 4sU induced quantification bias in nucleotide conversion RNA-seq data. Nucleic acids research (2024)
Chris David Lauruschkat, Ihsan Muchsin, Alice Felicitas Rein, Florian Erhard, Denise Grathwohl, Lars Dölken, Carolin Köchel, Anne Nehmer, Christine Susanne Falk, Götz Ulrich Grigoleit, Hermann Einsele, Sebastian Wurster, Sabrina Kraus
Impaired T cells and "memory-like" NK-cell reconstitution is linked to late-onset HCMV reactivation after letermovir cessation. Blood advances 8 (11) (2024)
Lior Fishman, Avani Modak, Gal Nechooshtan, Talya Razin, Florian Erhard, Aviv Regev, Jeffrey A Farrell, Michal Rabani
Cell-type-specific mRNA transcription and degradation kinetics in zebrafish embryogenesis from metabolically labeled single-cell RNA-seq. Nature communications 15 (1) (2024)
Lara Djakovic, Thomas Hennig, Katharina Reinisch, Andrea Milić, Adam W Whisnant, Katharina Wolf, Elena Weiβ, Tobias Haas, Arnhild Grothey, Christopher S Jürges, Michael Kluge, Elmar Wolf, Florian Erhard, Caroline C Friedel, Lars Dölken
The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes. Nature communications 14 (1) (2023)
Teresa Rummel, Lygeri Sakellaridi, Florian Erhard
grandR: a comprehensive package for nucleotide conversion RNA-seq data analysis. Nature communications 14 (1) (2023)
Hella Schwanke, Vladimir G Magalhães, Stefan Schmelz, Emanuel Wyler, Thomas Hennig, Thomas Günther, Adam Grundhoff, Lars Dölken, Markus Landthaler, Marco van Ham, Lothar Jänsch, Konrad Büssow, Joop van den Heuvel, Wulf Blankenfeldt, Caroline C Friedel, Florian Erhard, Melanie M Brinkmann
The Cytomegalovirus M35 Protein Directly Binds to the Interferon-β Enhancer and Modulates Transcription of Ifnb1 and Other IRF3-Driven Genes. Journal of virology (2023)
Lior Fishman, Gal Nechooshtan, Florian Erhard, Aviv Regev, Jeffrey A Farrell, Michal Rabani
Single-cell temporal dynamics reveals the relative contributions of transcription and degradation to cell-type specific gene expression in zebrafish embryos. bioRxiv : the preprint server for biology (2023)
Maria Lozano-Rabella, Andrea García-Garijo, Jara Palomero, Anna Yuste-Estevanez, Florian Erhard, Juan Martín-Liberal, Maria Ochoa de Olza, Ignacio Matos, Jared J Gartner, Michael Ghosh, Francesc Canals, August Vidal Bel, Josep Maria Piulats, Xavier M Guiu, Irene Brana, Eva Muñoz Couselo, Elena Garralda, Andreas Schlosser, Alena Gros
Exploring the immunogenicity of non-canonical HLA-I tumor ligands identified through proteogenomics. Clinical cancer research : an official journal of the American Association for Cancer Research (2023)
Alice Felicitas Rein, Chris David Lauruschkat, Ihsan Muchsin, Carolin Köchel, Sabine Tischer-Zimmermann, Liane Bauersfeld, Annika Nelde, Maren Lübke, Bhupesh Kumar Prusty, Andreas Schlosser, Anne Halenius, Britta Eiz-Vesper, Lars Dölken, Götz Ulrich Grigoleit, Hermann Einsele, Florian Erhard, Sabrina Kraus
Identification of novel canonical and cryptic HCMV-specific T-cell epitopes for HLA-A*03 and HLA-B*15 via peptide-PRISM. Blood advances (2023)
Lior Fishman, Gal Nechooshtan, Florian Erhard, Aviv Regev, Jeffrey A Farrell, Michal Rabani
Single-cell temporal dynamics reveals the relative contributions of transcription and degradation to cell-type specific gene expression in zebrafish embryos. bioRxiv : the preprint server for biology (2023)
Alma Zernecke, Florian Erhard, Tobias Weinberger, Christian Schulz, Klaus Ley, Antoine-Emmanuel Saliba, Clément Cochain
Integrated single-cell analysis based classification of vascular mononuclear phagocytes in mouse and human atherosclerosis. Cardiovascular research (2022)
Thomas Hennig, Archana Bairavasundaram Prusty, Benedikt B Kaufer, Adam W Whisnant, Manivel Lodha, Antje Enders, Julius Thomas, Francesca Kasimir, Arnhild Grothey, Teresa Klein, Stefanie Herb, Christopher S Jürges, Markus Sauer, Utz Fischer, Thomas Rudel, Gunter Meister, Florian Erhard, Lars Dölken, Bhupesh Kumar Prusty
Selective inhibition of miRNA processing by a herpesvirus-encoded miRNA. Nature 605 (7910) (2022)
Winfried Goettsch, Niko Beerenwinkel, Li Deng, Lars Dölken, Bas E Dutilh, Florian Erhard, Lars Kaderali, Max von Kleist, Roland Marquet, Jelle Matthijnssens, Shawna McCallin, Dino P McMahon, Thomas Rattei, Ronald P Van Rij, David L Robertson, Martin Schwemmle, Noam Stern-Ginossar, Manja Marz
ITN-VIROINF: Understanding (Harmful) Virus-Host Interactions by Linking Virology and Bioinformatics. Viruses 13 (5) (2021)
Xiuye Wang, Liang Liu, Adam W Whisnant, Thomas Hennig, Lara Djakovic, Nabila Haque, Cindy Bach, Rozanne M Sandri-Goldin, Florian Erhard, Caroline C Friedel, Lars Dölken, Yongsheng Shi
Mechanism and consequences of herpes simplex virus 1-mediated regulation of host mRNA alternative polyadenylation. PLoS genetics 17 (3) (2021)
Matteo C Da Vià, Oliver Dietrich, Marietta Truger, Panagiota Arampatzi, Johannes Duell, Anke Heidemeier, Xiang Zhou, Sophia Danhof, Sabrina Kraus, Manik Chatterjee, Manja Meggendorfer, Sven Twardziok, Maria-Elisabeth Goebeler, Max S Topp, Michael Hudecek, Sabrina Rebecca Prommersberger, Kristen Hege, Shari Kaiser, Viktoria Fuhr, Niels Weinhold, Andreas Rosenwald, Florian Erhard, Claudia Haferlach, Hermann Einsele, Klaus Martin Kortüm, Antoine-Emmanuel Saliba, Leo Rasche
Homozygous BCMA gene deletion in response to anti-BCMA CAR T cells in a patient with multiple myeloma. Nature medicine 27 (4) (2021)
Joern Pezoldt, Carolin Wiechers, Florian Erhard, Ulfert Rand, Tanja Bulat, Michael Beckstette, Andrea Brendolan, Jochen Huehn, Ulrich Kalinke, Mathias Müller, Birgit Strobl, Bart Deplancke, Luka Čičin Šain, Katarzyna M Sitnik
Single-cell transcriptional profiling of splenic fibroblasts reveals subset-specific innate immune signatures in homeostasis and during viral infection. Communications biology 4 (1) (2021)
Xiuye Wang, Thomas Hennig, Adam W Whisnant, Florian Erhard, Bhupesh Kumar Prusty, Caroline C Friedel, Elmira Forouzmand, William Hu, Luke N Erber, Yue Chen, Rozanne M Sandri-Goldin, Lars Dölken, Yongsheng Shi
Herpes simplex virus blocks host transcription termination via the bimodal activities of ICP27. Nature communications 11 (1) (2020)
Adam W Whisnant, Christopher S Jürges, Thomas Hennig, Emanuel Wyler, Bhupesh Kumar Prusty, Andrzej J Rutkowski, Anne L'hernault, Lara Djakovic, Margarete Göbel, Kristina Döring, Jennifer Menegatti, Robin Antrobus, Nicholas J Matheson, Florian W H Künzig, Guido Mastrobuoni, Chris Bielow, Stefan Kempa, Chunguang Liang, Thomas Dandekar, Ralf Zimmer, Markus Landthaler, Friedrich Grässer, Paul J Lehner, Caroline C Friedel, Florian Erhard, Lars Dölken
Integrative functional genomics decodes herpes simplex virus 1. Nature communications 11 (1) (2020)
Stefanie Schmidt, David Gay, Friedrich Wilhelm Uthe, Sarah Denk, Madelon Paauwe, Niels Matthes, Markus Elmar Diefenbacher, Sheila Bryson, Fiona Clare Warrander, Florian Erhard, Carsten Patrick Ade, Apoorva Baluapuri, Susanne Walz, Rene Jackstadt, Catriona Ford, Georgios Vlachogiannis, Nicola Valeri, Christoph Otto, Christina Schülein-Völk, Katja Maurus, Werner Schmitz, John Raymond Philip Knight, Elmar Wolf, Douglas Strathdee, Almut Schulze, Christoph-Thomas Germer, Andreas Rosenwald, Owen James Sansom, Martin Eilers, Armin Wiegering
A MYC-GCN2-eIF2α negative feedback loop limits protein synthesis to prevent MYC-dependent apoptosis in colorectal cancer. Nature cell biology 21 (11) (2019)
Florian Erhard, Anne Halenius, Cosima Zimmermann, Anne L'Hernault, Daniel J Kowalewski, Michael P Weekes, Stefan Stevanovic, Ralf Zimmer, Lars Dölken
Improved Ribo-seq enables identification of cryptic translation events. Nature methods 15 (5) (2018)
Thomas Hennig, Marco Michalski, Andrzej J Rutkowski, Lara Djakovic, Adam W Whisnant, Marie-Sophie Friedl, Bhaskar Anand Jha, Marisa A P Baptista, Anne L'Hernault, Florian Erhard, Lars Dölken, Caroline C Friedel
HSV-1-induced disruption of transcription termination resembles a cellular stress response but selectively increases chromatin accessibility downstream of genes. PLoS pathogens 14 (3) (2018)
Laura V Glaser, Simone Rieger, Sybille Thumann, Sophie Beer, Cornelia Kuklik-Roos, Dietmar E Martin, Kerstin C Maier, Marie L Harth-Hertle, Bjoern Andreas Gruening, Rolf Backofen, Stefan Krebs, Helmut Blum, Ralf Zimmer, Florian Erhard, Bettina Kempkes
EBF1 binds to EBNA2 and promotes the assembly of EBNA2 chromatin complexes in B cells. PLoS pathogens 13 (10) (2017)