Thomas R Sibley

Publication Activity (10 Years)

Years Active: 2020-2024
Publications (10 Years): 9

Top Topics

Machine Learning

Respiratory Syndrome Coronavirus

Candida Albicans

Top Venues

Nature communications

The New England journal of medicine

Open forum infectious diseases

Nature medicine

This page only lists publications with an associated author ORCID identifier.

Publications

Amanda C Perofsky, Chelsea L Hansen, Roy Burstein, Shanda Boyle, Robin Prentice, Cooper Marshall, David Reinhart, Ben Capodanno, Melissa Truong, Kristen Schwabe-Fry, Kayla Kuchta, Brian Pfau, Zack Acker, Jover Lee, Thomas R Sibley, Evan McDermot, Leslie Rodriguez-Salas, Jeremy Stone, Luis Gamboa, Peter D Han, Amanda Adler, Alpana Waghmare, Michael L Jackson, Michael Famulare, Jay Shendure, Trevor Bedford, Helen Y Chu, Janet A Englund, Joshua T Schiffer, Cecile Viboud
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years. Nature communications 15 (1) (2024)
Amanda C Perofsky, Chelsea L Hansen, Roy Burstein, Shanda Boyle, Robin Prentice, Cooper Marshall, David Reinhart, Ben Capodanno, Melissa Truong, Kristen Schwabe-Fry, Kayla Kuchta, Brian Pfau, Zack Acker, Jover Lee, Thomas R Sibley, Evan McDermot, Leslie Rodriguez-Salas, Jeremy Stone, Luis Gamboa, Peter D Han, Amanda Adler, Alpana Waghmare, Michael L Jackson, Michael Famulare, Jay Shendure, Trevor Bedford, Helen Y Chu, Janet A Englund, Joshua T Schiffer, Cecile Viboud
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years. Nature communications 15 (1) (2024)
Amanda C Perofsky, Chelsea L Hansen, Roy Burstein, Shanda Boyle, Robin Prentice, Cooper Marshall, David Reinhart, Ben Capodanno, Melissa Truong, Kristen Schwabe-Fry, Kayla Kuchta, Brian Pfau, Zack Acker, Jover Lee, Thomas R Sibley, Evan McDermot, Leslie Rodriguez-Salas, Jeremy Stone, Luis Gamboa, Peter D Han, Amanda Adler, Alpana Waghmare, Michael L Jackson, Michael Famulare, Jay Shendure, Trevor Bedford, Helen Y Chu, Janet A Englund, Joshua T Schiffer, Cecile Viboud
Impacts of human mobility on the citywide transmission dynamics of 18 respiratory viruses in pre- and post-COVID-19 pandemic years. Nature communications 15 (1) (2024)
Ana A Weil, Sarah L Sohlberg, Jessica A O'Hanlon, Amanda M Casto, Anne W Emanuels, Natalie K Lo, Emily P Greismer, Ariana M Magedson, Naomi C Wilcox, Ashley E Kim, Lewis Back, Christian D Frazar, Ben Pelle, Thomas R Sibley, Misja Ilcisin, Jover Lee, Erica L Ryke, J Chris Craft, Kristen M Schwabe-Fry, Kairsten A Fay, Shari Cho, Peter D Han, Sarah J Heidl, Brian A Pfau, Melissa Truong, Weizhi Zhong, Sanjay R Srivatsan, Katia F Harb, Geoffrey S Gottlieb, James P Hughes, Deborah A Nickerson, Christina M Lockwood, Lea M Starita, Trevor Bedford, Jay A Shendure, Helen Y Chu
SARS-CoV-2 Epidemiology on a Public University Campus in Washington State. Open forum infectious diseases 8 (11) (2021)
Nicola Felix Müller, Cassia Wagner, Chris D Frazar, Pavitra Roychoudhury, Jover Lee, Louise H Moncla, Benjamin Pelle, Matthew Richardson, Erica Ryke, Hong Xie, Lasata Shrestha, Amin Addetia, Victoria Mallett Rachleff, Nicole A P Lieberman, Meei-Li W Huang, Romesh Gautom, Geoff C Melly, Brian Hiatt, Philip Dykema, Amanda Adler, Elisabeth Brandstetter, Peter D Han, Kairsten Fay, Misja Ilcisin, Kirsten Lacombe, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Michael J Boeckh, Janet A Englund, Michael Famulare, Barry R Lutz, Mark J Rieder, Matthew Thompson, Jeffrey S Duchin, Joshua T Schiffer, Helen Y Chu, Jay Shendure, Keith R Jerome, Scott Lindquist, Alexander L Greninger, Deborah A Nickerson, Trevor Felix Bedford
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State. Science translational medicine 13 (595) (2021)
Helen Y Chu, Janet A Englund, Lea M Starita, Michael Famulare, Elisabeth Brandstetter, Deborah A Nickerson, Mark J Rieder, Amanda Adler, Kirsten Lacombe, Ashley E Kim, Chelsey Graham, Jennifer Logue, Caitlin R Wolf, Jessica Heimonen, Denise J McCulloch, Peter D Han, Thomas R Sibley, Jover Lee, Misja Ilcisin, Kairsten Fay, Roy Burstein, Beth Martin, Christina M Lockwood, Matthew Thompson, Barry Lutz, Michael Jackson, James P Hughes, Michael Boeckh, Jay Shendure, Trevor Bedford, null null
Early Detection of Covid-19 through a Citywide Pandemic Surveillance Platform. The New England journal of medicine 383 (2) (2020)
Julia H Rogers, Amy C Link, Denise McCulloch, Elisabeth Brandstetter Figueroa, Kira L Newman, Michael L Jackson, James P Hughes, Janet A Englund, Michael Boeckh, Nancy Sugg, Misja Ilcisin, Thomas R Sibley, Kairsten Fay, Jover Lee, Peter Han, Melissa Truong, Matthew Richardson, Deborah A Nickerson, Joshua T Schiffer, Trevor Bedford, Helen Y Chu, null null
Characteristics of COVID-19 in Homeless Shelters : A Community-Based Surveillance Study. Annals of internal medicine 174 (1) (2020)
Trevor Felix Bedford, Alexander L Greninger, Pavitra Roychoudhury, Joshua T Schiffer, Michael Famulare, Meei-Li W Huang, Arun Nalla, Gregory Pepper, Adam Reinhardt, Hong Xie, Lasata Shrestha, Truong N Nguyen, Amanda Adler, Elisabeth Brandstetter, Shari Cho, Danielle Giroux, Peter D Han, Kairsten Fay, Chris D Frazar, Misja Ilcisin, Kirsten Lacombe, Jover Lee, Anahita Kiavand, Matthew Richardson, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Deborah A Nickerson, Mark J Rieder, Janet A Englund, null null, James Hadfield, Emma B Hodcroft, John Huddleston, Louise H Moncla, Nicola Felix Müller, Richard A Neher, Xianding Deng, Wei Gu, Scot Federman, Charles Y Chiu, Jeffrey S Duchin, Romesh Gautom, Geoff C Melly, Brian Hiatt, Philip Dykema, Scott Lindquist, Krista Queen, Ying Tao, Anna Uehara, Suxiang Tong, Duncan R MacCannell, Gregory L Armstrong, Geoffrey Stuart Baird, Helen Y Chu, Jay Shendure, Keith R Jerome
Cryptic transmission of SARS-CoV-2 in Washington state. Science (New York, N.Y.) 370 (6516) (2020)
Allison Black, Duncan R MacCannell, Thomas R Sibley, Trevor Bedford
Ten recommendations for supporting open pathogen genomic analysis in public health. Nature medicine 26 (6) (2020)