Pavitra Roychoudhury

ResearcherID ORCID

Publication Activity (10 Years)

Years Active: 2017-2024
Publications (10 Years): 49

Top Venues

Nature communications

bioRxiv : the preprint server for biology

medRxiv : the preprint server for health sciences

Microbiology spectrum

University of Washington

University of Idaho (PHD)

This page only lists publications with an associated author ORCID identifier.

Affiliation History

University of Washington Mar 16 2019

United States

Acting Instructor :: Laboratory Medicine

Fred Hutchinson Cancer Research Center Mar 01 2019

United States

Research Associate :: Vaccine and Infectious Disease Division

Education History

University of Idaho Jan 06 2009 - Jun 25 2013

United States

PHD :: Mathematics

Publications

Hannah C Kubinski, Hannah W Despres, Bryan A Johnson, Madaline M Schmidt, Sara A Jaffrani, Margaret G Mills, Kumari Lokugamage, Caroline M Dumas, David J Shirley, Leah K Estes, Andrew S Pekosz, Jessica W Crothers, Pavitra Roychoudhury, Alexander L Greninger, Keith R Jerome, Bruno Martorelli Di Genova, David H Walker, Bryan A Ballif, Mark S Ladinsky, Pamela J Bjorkman, Vineet D Menachery, Emily A Bruce
Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation. bioRxiv : the preprint server for biology (2024)
Hannah C Kubinski, Hannah W Despres, Bryan A Johnson, Madaline M Schmidt, Sara A Jaffrani, Margaret G Mills, Kumari Lokugamage, Caroline M Dumas, David J Shirley, Leah K Estes, Andrew S Pekosz, Jessica W Crothers, Pavitra Roychoudhury, Alexander L Greninger, Keith R Jerome, Bruno Martorelli Di Genova, David H Walker, Bryan A Ballif, Mark S Ladinsky, Pamela J Bjorkman, Vineet D Menachery, Emily A Bruce
Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation. bioRxiv : the preprint server for biology (2024)
Cassia Wagner, Kathryn E Kistler, Garrett A Perchetti, Noah Baker, Lauren A Frisbie, Laura Marcela Torres, Frank Aragona, Cory Yun, Marlin Figgins, Alexander L Greninger, Alex Cox, Hanna N Oltean, Pavitra Roychoudhury, Trevor Bedford
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution. Nature communications 15 (1) (2024)
Craig A Magaret, Li Li, Allan C deCamp, Morgane Rolland, Michal Juraska, Brian D Williamson, James Ludwig, Cindy Molitor, David C Benkeser, Alex Luedtke, Brian Simpkins, Fei Heng, Yanqing Sun, Lindsay N Carpp, Hongjun Bai, Bethany L Dearlove, Elena E Giorgi, Mandy Jongeneelen, Boerries Brandenburg, Matthew McCallum, John E Bowen, David J Veesler, Jerald Sadoff, Glenda E Gray, Sanne Roels, An Vandebosch, Daniel J Stieh, Mathieu Le Gars, Johan Vingerhoets, Beatriz Grinsztejn, Paul A Goepfert, Leonardo Paiva de Sousa, Mayara Secco Torres Silva, Martín Casapía-Morales, Marcelo H Losso, Susan J Little, Aditya Gaur, Linda Gail Bekker, Sharana Mahomed, Carla Truyers, Ilse Van Dromme, Edith Swann, Mary A Marovich, Dean A Follmann, Kathleen M Neuzil, Lawrence Corey, Alexander L Greninger, Pavitra Roychoudhury, Ollivier Hyrien, Peter B Gilbert
Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. Nature communications 15 (1) (2024)
Hannah C Kubinski, Hannah W Despres, Bryan A Johnson, Madaline M Schmidt, Sara A Jaffrani, Margaret G Mills, Kumari Lokugamage, Caroline M Dumas, David J Shirley, Leah K Estes, Andrew S Pekosz, Jessica W Crothers, Pavitra Roychoudhury, Alexander L Greninger, Keith R Jerome, Bruno Martorelli Di Genova, David H Walker, Bryan A Ballif, Mark S Ladinsky, Pamela J Bjorkman, Vineet D Menachery, Emily A Bruce
Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation. bioRxiv : the preprint server for biology (2024)
Marius Walter, Anoria K Haick, Rebeccah Riley, Paola A Massa, Daniel E Strongin, Lindsay M Klouser, Michelle A Loprieno, Laurence Stensland, Tracy K Santo, Pavitra Roychoudhury, Martine Aubert, Matthew P Taylor, Keith R Jerome, Eric Verdin
Viral gene drive spread during herpes simplex virus 1 infection in mice. Nature communications 15 (1) (2024)
Craig A Magaret, Li Li, Allan C deCamp, Morgane Rolland, Michal Juraska, Brian D Williamson, James Ludwig, Cindy Molitor, David C Benkeser, Alex Luedtke, Brian Simpkins, Fei Heng, Yanqing Sun, Lindsay N Carpp, Hongjun Bai, Bethany L Dearlove, Elena E Giorgi, Mandy Jongeneelen, Boerries Brandenburg, Matthew McCallum, John E Bowen, David J Veesler, Jerald Sadoff, Glenda E Gray, Sanne Roels, An Vandebosch, Daniel J Stieh, Mathieu Le Gars, Johan Vingerhoets, Beatriz Grinsztejn, Paul A Goepfert, Leonardo Paiva de Sousa, Mayara Secco Torres Silva, Martín Casapía-Morales, Marcelo H Losso, Susan J Little, Aditya Gaur, Linda Gail Bekker, Sharana Mahomed, Carla Truyers, Ilse Van Dromme, Edith Swann, Mary A Marovich, Dean A Follmann, Kathleen M Neuzil, Lawrence Corey, Alexander L Greninger, Pavitra Roychoudhury, Ollivier Hyrien, Peter B Gilbert
Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. Nature communications 15 (1) (2024)
Cassia Wagner, Kathryn E Kistler, Garrett A Perchetti, Noah Baker, Lauren A Frisbie, Laura Marcela Torres, Frank Aragona, Cory Yun, Marlin Figgins, Alexander L Greninger, Alex Cox, Hanna N Oltean, Pavitra Roychoudhury, Trevor Bedford
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution. Nature communications 15 (1) (2024)
Cassia Wagner, Kathryn E Kistler, Garrett A Perchetti, Noah Baker, Lauren A Frisbie, Laura Marcela Torres, Frank Aragona, Cory Yun, Marlin Figgins, Alexander L Greninger, Alex Cox, Hanna N Oltean, Pavitra Roychoudhury, Trevor Bedford
Author Correction: Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution. Nature communications 15 (1) (2024)
Hannah C Kubinski, Hannah W Despres, Bryan A Johnson, Madaline M Schmidt, Sara A Jaffrani, Margaret G Mills, Kumari Lokugamage, Caroline M Dumas, David J Shirley, Leah K Estes, Andrew S Pekosz, Jessica W Crothers, Pavitra Roychoudhury, Alexander L Greninger, Keith R Jerome, Bruno Martorelli Di Genova, David H Walker, Bryan A Ballif, Mark S Ladinsky, Pamela J Bjorkman, Vineet D Menachery, Emily A Bruce
Variant mutation in SARS-CoV-2 nucleocapsid enhances viral infection via altered genomic encapsidation. bioRxiv : the preprint server for biology (2024)
Cassia Wagner, Kathryn E Kistler, Garrett A Perchetti, Noah Baker, Lauren A Frisbie, Laura Marcela Torres, Frank Aragona, Cory Yun, Marlin Figgins, Alexander L Greninger, Alex Cox, Hanna N Oltean, Pavitra Roychoudhury, Trevor Bedford
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution. Nature communications 15 (1) (2024)
Craig A Magaret, Li Li, Allan C deCamp, Morgane Rolland, Michal Juraska, Brian D Williamson, James Ludwig, Cindy Molitor, David C Benkeser, Alex Luedtke, Brian Simpkins, Fei Heng, Yanqing Sun, Lindsay N Carpp, Hongjun Bai, Bethany L Dearlove, Elena E Giorgi, Mandy Jongeneelen, Boerries Brandenburg, Matthew McCallum, John E Bowen, David J Veesler, Jerald Sadoff, Glenda E Gray, Sanne Roels, An Vandebosch, Daniel J Stieh, Mathieu Le Gars, Johan Vingerhoets, Beatriz Grinsztejn, Paul A Goepfert, Leonardo Paiva de Sousa, Mayara Secco Torres Silva, Martín Casapía-Morales, Marcelo H Losso, Susan J Little, Aditya Gaur, Linda Gail Bekker, Sharana Mahomed, Carla Truyers, Ilse Van Dromme, Edith Swann, Mary A Marovich, Dean A Follmann, Kathleen M Neuzil, Lawrence Corey, Alexander L Greninger, Pavitra Roychoudhury, Ollivier Hyrien, Peter B Gilbert
Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. Nature communications 15 (1) (2024)
Cassia Wagner, Kathryn E Kistler, Garrett A Perchetti, Noah Baker, Lauren A Frisbie, Laura Marcela Torres, Frank Aragona, Cory Yun, Marlin Figgins, Alexander L Greninger, Alex Cox, Hanna N Oltean, Pavitra Roychoudhury, Trevor Bedford
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution. Nature communications 15 (1) (2024)
Craig A Magaret, Li Li, Allan C deCamp, Morgane Rolland, Michal Juraska, Brian D Williamson, James Ludwig, Cindy Molitor, David C Benkeser, Alex Luedtke, Brian Simpkins, Fei Heng, Yanqing Sun, Lindsay N Carpp, Hongjun Bai, Bethany L Dearlove, Elena E Giorgi, Mandy Jongeneelen, Boerries Brandenburg, Matthew McCallum, John E Bowen, David J Veesler, Jerald Sadoff, Glenda E Gray, Sanne Roels, An Vandebosch, Daniel J Stieh, Mathieu Le Gars, Johan Vingerhoets, Beatriz Grinsztejn, Paul A Goepfert, Leonardo Paiva de Sousa, Mayara Secco Torres Silva, Martín Casapía-Morales, Marcelo H Losso, Susan J Little, Aditya Gaur, Linda Gail Bekker, Sharana Mahomed, Carla Truyers, Ilse Van Dromme, Edith Swann, Mary A Marovich, Dean A Follmann, Kathleen M Neuzil, Lawrence Corey, Alexander L Greninger, Pavitra Roychoudhury, Ollivier Hyrien, Peter B Gilbert
Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. Nature communications 15 (1) (2024)
Craig A Magaret, Li Li, Allan C deCamp, Morgane Rolland, Michal Juraska, Brian D Williamson, James Ludwig, Cindy Molitor, David C Benkeser, Alex Luedtke, Brian Simpkins, Fei Heng, Yanqing Sun, Lindsay N Carpp, Hongjun Bai, Bethany L Dearlove, Elena E Giorgi, Mandy Jongeneelen, Boerries Brandenburg, Matthew McCallum, John E Bowen, David J Veesler, Jerald Sadoff, Glenda E Gray, Sanne Roels, An Vandebosch, Daniel J Stieh, Mathieu Le Gars, Johan Vingerhoets, Beatriz Grinsztejn, Paul A Goepfert, Leonardo Paiva de Sousa, Mayara Secco Torres Silva, Martín Casapía-Morales, Marcelo H Losso, Susan J Little, Aditya Gaur, Linda Gail Bekker, Sharana Mahomed, Carla Truyers, Ilse Van Dromme, Edith Swann, Mary A Marovich, Dean A Follmann, Kathleen M Neuzil, Lawrence Corey, Alexander L Greninger, Pavitra Roychoudhury, Ollivier Hyrien, Peter B Gilbert
Quantifying how single dose Ad26.COV2.S vaccine efficacy depends on Spike sequence features. Nature communications 15 (1) (2024)
Cassia Wagner, Kathryn E Kistler, Garrett A Perchetti, Noah Baker, Lauren A Frisbie, Laura Marcela Torres, Frank Aragona, Cory Yun, Marlin Figgins, Alexander L Greninger, Alex Cox, Hanna N Oltean, Pavitra Roychoudhury, Trevor Bedford
Positive selection underlies repeated knockout of ORF8 in SARS-CoV-2 evolution. Nature communications 15 (1) (2024)
Denise J McCulloch, Julia H Rogers, Yongzhe Wang, Eric J Chow, Amy C Link, Caitlin R Wolf, Timothy M Uyeki, Melissa A R Rolfes, Emily Mosites, Jaydee Sereewit, Jeffrey S Duchin, Nancy K Sugg, Alexander L Greninger, Michael J Boeckh, Janet A Englund, Jay Shendure, James P Hughes, Lea M Starita, Pavitra Roychoudhury, Helen Y Chu
Respiratory syncytial virus and other respiratory virus infections in residents of homeless shelters - King County, Washington, 2019-2021. Influenza and other respiratory viruses 17 (6) (2023)
Robert M Cox, Carolin M Lieber, Josef D Wolf, Amirhossein Karimi, Nicole A P Lieberman, Zachary M Sticher, Pavitra Roychoudhury, Meghan K Smith, Rebecca E Krueger, Michael G Natchus, George R Painter, Alexander A Kolykhalov, Alexander L Greninger, Richard K Plemper
Comparing molnupiravir and nirmatrelvir/ritonavir efficacy and the effects on SARS-CoV-2 transmission in animal models. Nature communications 14 (1) (2023)
Anuradha Rao, Adrianna Westbrook, Leda Bassit, Richard Parsons, Eric Fitts, Morgan Greenleaf, Kaleb McLendon, Julie A Sullivan, William Oâ Sick, Tyler Baugh, Heather B Bowers, Filipp Frank, Ethan Wang, Mimi Le, Jennifer K Frediani, Pavitra Roychoudhury, Alexander L Greninger, Robert Jerris, Nira R Pollock, Eric A Ortlund, John D Roback, Wilbur A Lam, Pardis Sabeti
Sensitivity of Rapid Antigen Tests Against SARS-CoV-2 Omicron and Delta Variants. medRxiv : the preprint server for health sciences (2023)
Rossana Colón-Thillet, Daniel Stone, Michelle A Loprieno, Lindsay Klouser, Pavitra Roychoudhury, Tracy K Santo, Hong Xie, Laurence Stensland, Sarah L Upham, Gregory Pepper, Meei-Li Huang, Martine Aubert, Keith R Jerome
Liver-Humanized NSG-PiZ Mice Support the Study of Chronic Hepatitis B Virus Infection and Antiviral Therapies. Microbiology spectrum (2023)
Werner J D Ouwendijk, Pavitra Roychoudhury, Anthony L Cunningham, Keith R Jerome, David M Koelle, Paul R Kinchington, Ian Mohr, Angus C Wilson, Georges G M G M Verjans, Daniel P Depledge
Reanalysis of single-cell RNA sequencing data does not support herpes simplex virus 1 latency in non-neuronal ganglionic cells in mice. bioRxiv : the preprint server for biology (2023)
Anuradha Rao, Adrianna Westbrook, Leda Bassit, Richard Parsons, Eric Fitts, Morgan Greenleaf, Kaleb McLendon, Julie A Sullivan, William Oâ Sick, Tyler Baugh, Heather B Bowers, Filipp Frank, Ethan Wang, Mimi Le, Jennifer K Frediani, Pavitra Roychoudhury, Alexander L Greninger, Robert Jerris, Nira R Pollock, Eric A Ortlund, John D Roback, Wilbur A Lam, Pardis Sabeti
Sensitivity of Rapid Antigen Tests Against SARS-CoV-2 Omicron and Delta Variants. medRxiv : the preprint server for health sciences (2023)
Daniel Stone, Nadja Meumann, Anne-Sophie Kuhlmann, Christopher W Peterson, Hong Xie, Pavitra Roychoudhury, Michelle A Loprieno, Xuan-Khang Vu, Daniel E Strongin, Elizabeth J Kenkel, Anoria Haick, Laurence Stensland, Willimark M Obenza, Jacob Parrott, Veronica Nelson, Robert D Murnane, Meei-Li W Huang, Martine Aubert, Hans-Peter Kiem, Hildegard Büning, Keith R Jerome
A multiplexed barcode approach to simultaneously evaluate gene delivery by adeno-associated virus capsid variants in nonhuman primates. Hepatology communications 7 (2) (2023)
Madeleine R Heldman, Darren J Wight, Pakorn Aiewsakun, Amr Aswad, Min Fang, Pavitra Roychoudhury, Terry Stevens-Ayers, Keith R Jerome, Danielle M Zerr, Alexander L Greninger, Benedikt B Kaufer, Michael Boeckh, Joshua A Hill
Chromosome-Specific Human Herpesvirus 6 Integration and Hematologic Malignancies. Journal of virology 96 (17) (2022)
Hannah W Despres, Margaret G Mills, David J Shirley, Madaline M Schmidt, Meei-Li W Huang, Pavitra Roychoudhury, Keith R Jerome, Alexander L Greninger, Emily A Bruce
Measuring infectious SARS-CoV-2 in clinical samples reveals a higher viral titer:RNA ratio for Delta and Epsilon vs. Alpha variants. Proceedings of the National Academy of Sciences of the United States of America 119 (5) (2022)
Andrew M Laitman, Joshua A Lieberman, Noah G Hoffman, Pavitra Roychoudhury, Patrick C Mathias, Alexander L Greninger
The SARS-CoV-2 Omicron Variant Does Not Have Higher Nasal Viral Loads Compared to the Delta Variant in Symptomatic and Asymptomatic Individuals. Journal of clinical microbiology 60 (4) (2022)
Pavitra Roychoudhury, Shishi Luo, Kathleen Hayashibara, Pooneh Hajian, Margaret G Mills, Jean Lozach, Tyler Cassens, Seffir T Wendm, Isabel Arnould, David Becker, Tim Wesselman, Jeremy Davis-Turak, Richard Creager, Eric Lai, Keith R Jerome, Tracy Basler, Andrew Dei Rossi, William Lee, Alexander L Greninger
Identification of Omicron-Delta Coinfections Using PCR-Based Genotyping. Microbiology spectrum 10 (3) (2022)
Jaydee Sereewit, Nicole A P Lieberman, Hong Xie, Shah A K Mohamed Bakhash, B Ethan Nunley, Benjamin Chung, Margaret G Mills, Pavitra Roychoudhury, Alexander L Greninger
ORF-Interrupting Mutations in Monkeypox Virus Genomes from Washington and Ohio, 2022. Viruses 14 (11) (2022)
Germán Áñez, Lisa M Dunkle, Cynthia L Gay, Karen L Kotloff, Jeffrey M Adelglass, Brandon Essink, James D Campbell, Shane Cloney-Clark, Mingzhu Zhu, Joyce S Plested, Pavitra Roychoudhury, Alexander L Greninger, Nita Patel, Alice McGarry, Wayne Woo, Iksung Cho, Gregory M Glenn, Filip Dubovsky, null null
Safety, Immunogenicity and Efficacy of NVX-CoV2373 in Adolescents in PREVENT-19: A Randomized, Phase 3 Trial. medRxiv : the preprint server for health sciences (2022)
Diana Avetyan, Siras Hakobyan, Maria Nikoghosyan, Lilit Ghukasyan, Gisane Khachatryan, Tamara Sirunyan, Nelli Muradyan, Roksana Zakharyan, Andranik Chavushyan, Varduhi Hayrapetyan, Anahit Hovhannisyan, Shah A K Mohamed Bakhash, Keith R Jerome, Pavitra Roychoudhury, Alexander L Greninger, Lyudmila Niazyan, Mher Davidyants, Gayane Melik-Andreasyan, Shushan Sargsyan, Lilit Nersisyan, Arsen Arakelyan
Molecular Analysis of SARS-CoV-2 Lineages in Armenia. Viruses 14 (5) (2022)
Eric Lai, Emily B Kennedy, Jean Lozach, Kathleen Hayashibara, Jeremy Davis-Turak, David Becker, Pius Brzoska, Tyler Cassens, Evan Diamond, Manoj Gandhi, Alexander L Greninger, Pooneh Hajian, Nicole A Leonetti, Jason M Nguyen, K M Clair O'Donovan, Troy Peck, Jimmy M Ramirez, Pavitra Roychoudhury, Efren Sandoval, Cassandra Wesselman, Timothy Wesselman, Simon White, Stephen Williams, David Wong, Yufei Yu, Richard S Creager
A Method for Variant Agnostic Detection of SARS-CoV-2, Rapid Monitoring of Circulating Variants, and Early Detection of Emergent Variants Such as Omicron. Journal of clinical microbiology 60 (7) (2022)
Robert M Cox, Carolin M Lieber, Josef D Wolf, Amirhossein Karimi, Nicole A P Lieberman, Zachary M Sticher, Pavitra Roychoudhury, Meghan K Andrews, Rebecca E Krueger, Michael G Natchus, George R Painter, Alexander A Kolykhalov, Alexander L Greninger, Richard K Plemper
Paxlovid-like nirmatrelvir/ritonavir fails to block SARS-CoV-2 transmission in ferrets. bioRxiv : the preprint server for biology (2022)
Shiv Gandhi, Jonathan Klein, Alexander Robertson, Mario A Peña-Hernández, Michelle J Lin, Pavitra Roychoudhury, Peiwen Lu, John Fournier, David Ferguson, Shah A Mohamed Bakhash, M Catherine Muenker, Ariktha Srivathsan, Elsio A Wunder, Nicholas Kerantzas, Wenshuai Wang, Brett Lindenbach, Anna Pyle, Craig B Wilen, Onyema Ogbuagu, Alexander L Greninger, Akiko Iwasak, Wade L Schulz, Albert I Ko
De novo emergence of a remdesivir resistance mutation during treatment of persistent SARS-CoV-2 infection in an immunocompromised patient: A case report. medRxiv : the preprint server for health sciences (2021)
Abbye E McEwen, Seth Cohen, Chloe Bryson-Cahn, Catherine Liu, Steven A Pergam, John Lynch, Adrienne Schippers, Kathy Strand, Estella Whimbey, Nandita S Mani, Allison J Zelikoff, Vanessa A Makarewicz, Elizabeth R Brown, Shah A Mohamed Bakhash, Noah R Baker, Jared Castor, Robert J Livingston, Meei-Li Huang, Keith R Jerome, Alexander L Greninger, Pavitra Roychoudhury
Variants of concern are overrepresented among post-vaccination breakthrough infections of SARS-CoV-2 in Washington State. Clinical infectious diseases : an official publication of the Infectious Diseases Society of America (2021)
Garrett A Perchetti, Haiying Zhu, Margaret G Mills, Lasata Shrestha, Cassia Wagner, Shah Mohamed Bakhash, Michelle J Lin, Hong Xie, Meei-Li Huang, Patrick C Mathias, Trevor Felix Bedford, Keith R Jerome, Alexander L Greninger, Pavitra Roychoudhury
Specific allelic discrimination of N501Y and other SARS-CoV-2 mutations by ddPCR detects B.1.1.7 lineage in Washington State. Journal of medical virology 93 (10) (2021)
Nicola Felix Müller, Cassia Wagner, Chris D Frazar, Pavitra Roychoudhury, Jover Lee, Louise H Moncla, Benjamin Pelle, Matthew Richardson, Erica Ryke, Hong Xie, Lasata Shrestha, Amin Addetia, Victoria Mallett Rachleff, Nicole A P Lieberman, Meei-Li W Huang, Romesh Gautom, Geoff C Melly, Brian Hiatt, Philip Dykema, Amanda Adler, Elisabeth Brandstetter, Peter D Han, Kairsten Fay, Misja Ilcisin, Kirsten Lacombe, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Michael J Boeckh, Janet A Englund, Michael Famulare, Barry R Lutz, Mark J Rieder, Matthew Thompson, Jeffrey S Duchin, Joshua T Schiffer, Helen Y Chu, Jay Shendure, Keith R Jerome, Scott Lindquist, Alexander L Greninger, Deborah A Nickerson, Trevor Felix Bedford
Viral genomes reveal patterns of the SARS-CoV-2 outbreak in Washington State. Science translational medicine 13 (595) (2021)
Miguel I Paredes, Stephanie M Lunn, Michael Famulare, Lauren A Frisbie, Ian Painter, Roy Burstein, Pavitra Roychoudhury, Hong Xie, Shah A Mohamed Bakhash, Ricardo Perez, Maria Lukes, Sean Ellis, Saraswathi Sathees, Patrick C Mathias, Alexander L Greninger, Lea M Starita, Chris D Frazar, Erica Ryke, Weizhi Zhong, Luis Gamboa, Machiko Threlkeld, Jover Lee, Deborah A Nickerson, Daniel L Bates, Matthew E Hartman, Eric Haugen, Truong N Nguyen, Joshua D Richards, Jacob L Rodriguez, John A Stamatoyannopoulos, Eric Thorland, Geoff Melly, Philip E Dykema, Drew C MacKellar, Hannah K Gray, Avi Singh, JohnAric MoonDance Peterson, Denny Russell, Laura Marcela Torres, Scott Lindquist, Trevor Bedford, Krisandra J Allen, Hanna N Oltean
Associations between SARS-CoV-2 variants and risk of COVID-19 hospitalization among confirmed cases in Washington State: a retrospective cohort study. medRxiv : the preprint server for health sciences (2021)
Feng Hsiao, Julie Frouard, Andrea Gramatica, Guorui Xie, Sushama Telwatte, Guinevere Q Lee, Pavitra Roychoudhury, Roland Schwarzer, Xiaoyu Luo, Steven A Yukl, Sulggi Lee, Rebecca Hoh, Steven G Deeks, R Brad Jones, Marielle Cavrois, Warner C Greene, Nadia R Roan
Tissue memory CD4+ T cells expressing IL-7 receptor-alpha (CD127) preferentially support latent HIV-1 infection. PLoS pathogens 16 (4) (2020)
Nicole A P Lieberman, Vikas Peddu, Hong Xie, Lasata Shrestha, Meei-Li Huang, Megan C Mears, Maria N Cajimat, Dennis A Bente, Pei-Yong Shi, Francesca Bovier, Pavitra Roychoudhury, Keith R Jerome, Anne Moscona, Matteo Porotto, Alexander L Greninger
In vivo antiviral host transcriptional response to SARS-CoV-2 by viral load, sex, and age. PLoS biology 18 (9) (2020)
Xianding Deng, Wei Gu, Scot Federman, Louis du Plessis, Oliver George Pybus, Nuno Rodrigues Faria, Candace Wang, Guixia Yu, Brian Bushnell, Chao-Yang Pan, Hugo Guevara, Alicia Sotomayor Gonzalez, Kelsey C Zorn, Allan Gopez, Venice Servellita, Elaine Hsu, Steve Miller, Trevor Felix Bedford, Alexander L Greninger, Pavitra Roychoudhury, Joshua T Schiffer, Michael Famulare, Helen Y Chu, Jay Shendure, Keith R Jerome, Catie Anderson, Karthik Gangavarapu, Mark Zeller, Emily Spencer, Kristian G Andersen, Duncan R MacCannell, Clinton R Paden, Yan Li, Jing Zhang, Suxiang Tong, Gregory Armstrong, Scott Morrow, Matthew Willis, Bela T Matyas, Sundari Mase, Olivia Kasirye, Maggie Park, Godfred Masinde, Curtis Chan, Alexander Tin Han Yu, Shua J Chai, Elsa Villarino, Brandon Bonin, Debra A Wadford, Charles Y Chiu
Genomic surveillance reveals multiple introductions of SARS-CoV-2 into Northern California. Science (New York, N.Y.) 369 (6503) (2020)
Martine Aubert, Daniel E Strongin, Pavitra Roychoudhury, Michelle A Loprieno, Anoria K Haick, Lindsay M Klouser, Laurence Stensland, Meei-Li Huang, Negar Makhsous, Alexander Tait, Harshana S De Silva Feelixge, Roman Galetto, Philippe Duchateau, Alexander L Greninger, Daniel Stone, Keith R Jerome
Gene editing and elimination of latent herpes simplex virus in vivo. Nature communications 11 (1) (2020)
Nicole A P Lieberman, Vikas Peddu, Hong Xie, Lasata Shrestha, Meei-Li Huang, Megan C Mears, Maria N Cajimat, Dennis A Bente, Pei-Yong Shi, Francesca Bovier, Pavitra Roychoudhury, Keith R Jerome, Anne Moscona, Matteo Porotto, Alexander L Greninger
In vivo antiviral host response to SARS-CoV-2 by viral load, sex, and age. bioRxiv : the preprint server for biology (2020)
Trevor Felix Bedford, Alexander L Greninger, Pavitra Roychoudhury, Joshua T Schiffer, Michael Famulare, Meei-Li W Huang, Arun Nalla, Gregory Pepper, Adam Reinhardt, Hong Xie, Lasata Shrestha, Truong N Nguyen, Amanda Adler, Elisabeth Brandstetter, Shari Cho, Danielle Giroux, Peter D Han, Kairsten Fay, Chris D Frazar, Misja Ilcisin, Kirsten Lacombe, Jover Lee, Anahita Kiavand, Matthew Richardson, Thomas R Sibley, Melissa Truong, Caitlin R Wolf, Deborah A Nickerson, Mark J Rieder, Janet A Englund, null null, James Hadfield, Emma B Hodcroft, John Huddleston, Louise H Moncla, Nicola Felix Müller, Richard A Neher, Xianding Deng, Wei Gu, Scot Federman, Charles Y Chiu, Jeffrey S Duchin, Romesh Gautom, Geoff C Melly, Brian Hiatt, Philip Dykema, Scott Lindquist, Krista Queen, Ying Tao, Anna Uehara, Suxiang Tong, Duncan R MacCannell, Gregory L Armstrong, Geoffrey Stuart Baird, Helen Y Chu, Jay Shendure, Keith R Jerome
Cryptic transmission of SARS-CoV-2 in Washington state. Science (New York, N.Y.) 370 (6516) (2020)
Shijie Cao, Sarah Danielle Slack, Claire N Levy, Sean M Hughes, Yonghou Jiang, Christopher Yogodzinski, Pavitra Roychoudhury, Keith R Jerome, Joshua T Schiffer, Florian Hladik, Kim A Woodrow
Hybrid nanocarriers incorporating mechanistically distinct drugs for lymphatic CD4+ T cell activation and HIV-1 latency reversal. Science advances 5 (3) (2019)
Harshana S De Silva Feelixge, Daniel Stone, Pavitra Roychoudhury, Martine Aubert, Keith R Jerome
CRISPR/Cas9 and Genome Editing for Viral Disease-Is Resistance Futile? ACS infectious diseases 4 (6) (2018)
Pavitra Roychoudhury, Harshana De Silva Feelixge, Daniel Reeves, Bryan T Mayer, Daniel Stone, Joshua T Schiffer, Keith R Jerome
Viral diversity is an obligate consideration in CRISPR/Cas9 designs for targeting the HIV reservoir. BMC biology 16 (1) (2018)
Joshua T Schiffer, Dave A Swan, Pavitra Roychoudhury, Jennifer M Lund, Martin Prlic, Jia Zhu, Anna Wald, Lawrence Corey
A Fixed Spatial Structure of CD8+ T Cells in Tissue during Chronic HSV-2 Infection. Journal of immunology (Baltimore, Md. : 1950) 201 (5) (2018)
Christine Johnston, Amalia S Magaret, Pavitra Roychoudhury, Alexander L Greninger, Daniel B Reeves, Joshua Schiffer, Keith R Jerome, Cassandra Sather, Kurt Diem, Jairam R Lingappa, Connie Celum, David M Koelle, Anna Wald
Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study. PLoS medicine 14 (12) (2017)
Chung H Dang, Martine Aubert, Harshana S De Silva Feelixge, Kurt Diem, Michelle A Loprieno, Pavitra Roychoudhury, Daniel Stone, Keith R Jerome
In vivo dynamics of AAV-mediated gene delivery to sensory neurons of the trigeminal ganglia. Scientific reports 7 (1) (2017)

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Pavitra Roychoudhury